Gene Details:

  • Gene ID: Spipo6G0049800
  • Gene Family: CAMTA Family
  • Description: CAMTA Family protein
  • Species: Spirodela polyrhiza
  • Source: CAMTA family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_008786234.1  — calmodulin-binding transcription activator CBT isoform X2
  • TrEMBL:  A0A1D1Y2X2  — A0A1D1Y2X2_9ARAE; Calmodulin-binding transcription activator 5
  • STRING:  XP_008786234.1  — (Phoenix dactylifera)

Gene Ontology:

  • GO:0006412  — Biological Process — translation
  • GO:0005634  — Cellular Component — nucleus
  • GO:0005840  — Cellular Component — ribosome
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0003735  — Molecular Function — structural constituent of ribosome
  • GO:0005515  — Molecular Function — protein binding

Family Introduction:

  • The CAMTA family of calmodulin binding transcription factors comprises six members in Arabidopsis (Bouche et al., 2002; Finkler et al., 2007). Each protein includes an IQ domain for calmodulin binding; ankyrin repeats for protein interactions; the TIG domain, which has nonspecific DNA binding activity; and the CG-1 domain, which has specific DNA binding activity. The CG-1 domain recognizes the core consensus sequence, vCGCGb, referred to as the CG-1 element (da Costa e Silva, 1994). This sequence matches the CM2 sequence, CCGCGT, and overlaps the ICEr1 element. Thus, the possibility was raised that one or more of the CAMTA proteins might have a role in regulating CBF2 expression.

Literature:

Sequences:

CDS Sequence:
  • >Spipo6G0049800|Spirodela_polyrhiza|CAMTA|Spipo6G0049800
    ATGGAGCCGGGGGGCGCGGCGCAGCTAGCCGCGTCGGAGATTCACGGGTTTCACACGACGGCAGATTTGGATATTGGGAAGCTATTGGATGATGCGTCAAAAAGATGGCTTCGACCAAATGAGATTTATGCAGTATTATCAAATTACAACCTCTTGAAGATTCAACCTCAGCCAGTTATGAATCCAGGAAGTGGCAGTCTTCTTTTGTTTGACCGCAATATGCTGAGGAATTTCCGGAAAGATGGACATAATTGGAGAAAAAAAAAGGATGGGAAGACTGTGCAGGAAGCCCACGAAAAATTAAAGATTGGTACGGATGAAAGAATTCATGTGTACTATGCACGTGGTGAGGATGATCCAAACTTTTACCGTAGGTGTTATTGGCTACTTGACAGGAGCCTTGAGCGGATAGTCCTGGTACACTACCGCCAGACATCAGAGGATAATGCAAATCAGCAGCTTTCTGCTGCGGTAGAGTGTAAGGATAACTTTTCATTGGCAAATTCGTTGCATGCTTCTCCATCGACACCTCTGAGTTCGACTTCTGGTTCCAACCACGTTGAGACATCTGGATCTTTGGTATTTTCTGACGAAATTAACTCAACAAAAGATTGTGCAACCATCACTGGAACTTTTCTGATTTCCATCGATGGTACAGGTTATGGCATCTCAGCTGTTGATAAGTTTTCAGAACTTGAGAATCCTGACTTAACTATTGATATGATCAACAAATTTGATTGGGCATCTCTTGTTGAGCCGCAACCCTCCAGTGATCCCAATGCATTACCCTATTACCAAGATATAGAACGTGGACAAGCTTTCAGAAATCATGGTAATCTTGAAGGCCTAGGTCATGCCCAGCCAACCAGTATGAGTACTTTAACAAACTTGAGTGCTGTTAGCCAACCAGTTGGTGGCTGTTTGCAACTATCAGAAGTTGTTCAAGAAACTGTGCACATGCATGCAATTCCTGACACTGGCACAAGTAAAGCCTTGCAGTCTCAAAACAGTTTTATCCAGTGGGACTACGTTGTTGATGATATCCCTGGATCATTAAATAATACAGAACCTGGTTGCCAAGCTTCAGATGATCACGAATTTAAAAAACTTTCCATAGAGAATGAACCGTACAGATCGGAAGAAGTTTTCACTATTACAGATATCTCCCCAGCATGGTCCTATGCAGATGAAGAAACCAAGGTAATTGTGGTTGGATATTTCCGAGAATCCCACAAAAATATTGCAAATTCGAAGATGTTTGTGGTCTATGGTGATGCCTGTGTTCCTGCAGAAATGATCCAACTTGGAGTATATAGATGCAATTTACTACCAAATACACGAAAACCTGGATTGATAAATTTTTATCTAACCTTAGATAAGCAGACGCCAGTTAGTCAAGTCATGGATTTTGAGGTTCGCCCTCCCACAAGTTCATCGACAAACGCTATCTCTTTGCAAGATGCTGACGACAGTGAGCCTGACCAAAAAGATTTTTATGTTCTAATAAGGCTTGTTCGATTGCTTTTCTCCTCATCAAACAACCTTTCCATTCTATCAAACGTGGTATCATCCAATGCCTTGAAGGGAGCGAAAAGATTTTTGTCAGCTACCTCTTCTTCACTGGAGAAAGATTGGATCCATCTTCCCAAGCTAGTCGAGAAAAACGAGATTTCAATTCAGTCCATCAACCAGCAGCTGTTCGAGTTGGTTTTGAAAAATAAGCTACGGGAATGGCTTTCAACAAAACTAGCTGAGGGACGTAGAACAACTGAACTGGACAACCAAGGTTTAGGAGTTATTCATTTGTGTTCTATACTGGACTACACTTGGGCAGCTCATCTGTTCAAGGCGTCTGGCCTATCCATAGACTTTCGTGACGTTTATGGATGGACTGCTCTACATTGGGCTGCATACTGTGGGAGGGTGAAGATGGTTGCAGCACTTTTATCCTCAGGGGCAAACCCTAGCCTAGTTACCGACCCAACTCCTCAGTTTCCTGGAGGATGCACTGCCGCTGACTTGGCATCAAACCAAGGACATGAAGGTCTGGGAGCATACCTGGCAGAAAAGGCACTGAGTGCACATTTCGCCGCCATGAACTTGTCTGGTAATGTGACCAACCCATCAGCTCGTGCTTCAAGTGAGGCACCAAACAGTGAGAACATAGAAAGCGGGAGTAGTGAGCAAGAAGTGCTCTTGAAGTACTCACTAGCAGCCTATCGCAATGCCGCCGACGCAGCCGACCGCATCCATGGCGCTCTCAGAGAGCGTTCCATGAGGCTGCATGTGAAAGCTGCAGAATTGTCAAGCTCTCAGGAAGATGCAGGCTTTATAATTGCTGCTCTAAAGATCCAGAAGGCATATCGCAACCACAACGGCCGGAAAATGATGAAGGCCGCAGCCCGTATACAGGGCACCTACCGCACATGGCAGGCTCGAAAGAATTTCCTCAACCTGCGTCGGCATGCCATCAGAATTCAAGCCGCGTTCCGAGGTCTCCTTGTGAGGAAGCAGTACCGCCAGATCATTTGGTCGGTCGGCGTGCTGGAGAAAGCGGTCTTGCGGTGGCGTCTGAAGCGGAAAGGCCTGCGCGGGCTTCAGATCGAGCCAGACGGGGTTCCAGCTGCAGCCGGCGAGGAGAAGAACGTCGGCGAGGAGGACTTCTTCCGGGCCAGCCGAGAGCAGGCCGAAGAACGGGTCGACAGATCGGTCGTGCGCGTTCAAGCCATGTTCCGCTCGCATCGCGCGCAGCAGGAGTACAGGAAGATGAAGCTAGCTCATGATCGGGCCAAGCTGGAATACGATGAGTTTGCCAATTATGATGAAAATGGACAGGCCCAGTTTGAAGAGGACCCATTAACACCACCTCCCCCAGTAAGGGGGTATTTTGGTCCTTTCGTGGTCACCAGCTCGGGAGGACCCGCTAGGGCTTCCACGAGAGGAGCAGAGGGCAGTATAAATGGCCTGCAAGAGCGACGGCAGAAGACCCTAATCTGCAGGAGCCATCTTGAGGCCTGGACGACAGCCCCAGGTGCATCAGCAGGGATGGCCAAGTCGAAGAACCATACGGCTCATAATCAGTCCTTCAAGGCCCACAGGAACGGCATCAAGAAGCCCCGCAGGCACCGGAAGACCTCCACCAAGGGGATGGATCCAAAATTCCTGAGGAATCAGAGGTACGCGAGGAAGCATAACAAGCCGAACGGGTCCACAAGTGAGCAGGAGGAATAG
Protein Sequence:
  • >Spipo6G0049800|Spirodela_polyrhiza|CAMTA|Spipo6G0049800
    MEPGGAAQLAASEIHGFHTTADLDIGKLLDDASKRWLRPNEIYAVLSNYNLLKIQPQPVMNPGSGSLLLFDRNMLRNFRKDGHNWRKKKDGKTVQEAHEKLKIGTDERIHVYYARGEDDPNFYRRCYWLLDRSLERIVLVHYRQTSEDNANQQLSAAVECKDNFSLANSLHASPSTPLSSTSGSNHVETSGSLVFSDEINSTKDCATITGTFLISIDGTGYGISAVDKFSELENPDLTIDMINKFDWASLVEPQPSSDPNALPYYQDIERGQAFRNHGNLEGLGHAQPTSMSTLTNLSAVSQPVGGCLQLSEVVQETVHMHAIPDTGTSKALQSQNSFIQWDYVVDDIPGSLNNTEPGCQASDDHEFKKLSIENEPYRSEEVFTITDISPAWSYADEETKVIVVGYFRESHKNIANSKMFVVYGDACVPAEMIQLGVYRCNLLPNTRKPGLINFYLTLDKQTPVSQVMDFEVRPPTSSSTNAISLQDADDSEPDQKDFYVLIRLVRLLFSSSNNLSILSNVVSSNALKGAKRFLSATSSSLEKDWIHLPKLVEKNEISIQSINQQLFELVLKNKLREWLSTKLAEGRRTTELDNQGLGVIHLCSILDYTWAAHLFKASGLSIDFRDVYGWTALHWAAYCGRVKMVAALLSSGANPSLVTDPTPQFPGGCTAADLASNQGHEGLGAYLAEKALSAHFAAMNLSGNVTNPSARASSEAPNSENIESGSSEQEVLLKYSLAAYRNAADAADRIHGALRERSMRLHVKAAELSSSQEDAGFIIAALKIQKAYRNHNGRKMMKAAARIQGTYRTWQARKNFLNLRRHAIRIQAAFRGLLVRKQYRQIIWSVGVLEKAVLRWRLKRKGLRGLQIEPDGVPAAAGEEKNVGEEDFFRASREQAEERVDRSVVRVQAMFRSHRAQQEYRKMKLAHDRAKLEYDEFANYDENGQAQFEEDPLTPPPPVRGYFGPFVVTSSGGPARASTRGAEGSINGLQERRQKTLICRSHLEAWTTAPGASAGMAKSKNHTAHNQSFKAHRNGIKKPRRHRKTSTKGMDPKFLRNQRYARKHNKPNGSTSEQEE*