Gene Details:

  • Gene ID: PH01001360G0260
  • Gene Family: CAMTA Family
  • Description: CAMTA Family protein
  • Species: Phyllostachys heterocycla
  • Source: CAMTA family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_025793889.1  — calmodulin-binding transcription activator 1-like isoform X1
  • Refseq:  XP_025793890.1  — calmodulin-binding transcription activator 3-like isoform X2
  • Swissprot:  Q6NPP4  — CMTA2_ARATH; Calmodulin-binding transcription activator 2
  • TrEMBL:  A0A3L6S5G6  — A0A3L6S5G6_PANMI; Calmodulin-binding transcription activator 3-like isoform X2
  • TrEMBL:  A0A3L6SCZ7  — A0A3L6SCZ7_PANMI; Calmodulin-binding transcription activator 3-like isoform X2
  • STRING:  Pavir.Ib02991.1.p  — (Panicum virgatum)

Gene Ontology:

  • GO:0005634  — Cellular Component — nucleus
  • GO:0003677  — Molecular Function — DNA binding

Family Introduction:

  • The CAMTA family of calmodulin binding transcription factors comprises six members in Arabidopsis (Bouche et al., 2002; Finkler et al., 2007). Each protein includes an IQ domain for calmodulin binding; ankyrin repeats for protein interactions; the TIG domain, which has nonspecific DNA binding activity; and the CG-1 domain, which has specific DNA binding activity. The CG-1 domain recognizes the core consensus sequence, vCGCGb, referred to as the CG-1 element (da Costa e Silva, 1994). This sequence matches the CM2 sequence, CCGCGT, and overlaps the ICEr1 element. Thus, the possibility was raised that one or more of the CAMTA proteins might have a role in regulating CBF2 expression.

Literature:

Sequences:

CDS Sequence:
  • >PH01001360G0260|Phyllostachys_heterocycla|CAMTA|PH01001360G0260
    ATGACTTCTGAAACAGATATTGAGCAGATACTGAAGGAGGCTCAACACCGATGGTTACGCCCTGCCGAGATTTGTGAAATACTTAAGAATTACAGAAATTTCCGTATAGCTCCAGAACCACCAAATCGGCCTCCAAGTGGTTCGCTTTTCTTGTTTGATCGGAAGGTATTGAGATATTTCAGGAAGGATGGCCATAATTGGAGAAAGAAAAGGGATGGAAAGACTGTCAAAGAAGCCCATGAAAGGTTAAAATCTGGAAGCATTGATGTGCTCCACTGTTATTATGCTCATGGGGAAGAGAATATAAACTTCCAGAGGAGGAGTTATTGGATGTTGGAGGAGGATTTTATGCACATTGTCCTCGTACATTATCTTGAAGTCAAGGTTACACCTAACCCTGCTATGGTTGCAATGTAG
Protein Sequence:
  • >PH01001360G0260|Phyllostachys_heterocycla|CAMTA|PH01001360G0260
    MTSETDIEQILKEAQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQRRSYWMLEEDFMHIVLVHYLEVKVTPNPAMVAM*