Gene Details:

  • Gene ID: ORGLA04G0075400.1
  • Gene Family: CAMTA Family
  • Description: CAMTA Family protein
  • Species: Oryza glaberrima
  • Source: CAMTA family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015635911.1  — calmodulin-binding transcription activator 4 isoform X1
  • TrEMBL:  I1PKN5  — I1PKN5_ORYGL; Uncharacterized protein
  • STRING:  ORGLA04G0075400.1  — (Oryza glaberrima)

Gene Ontology:

  • GO:0005634  — Cellular Component — nucleus
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0005515  — Molecular Function — protein binding

Family Introduction:

  • The CAMTA family of calmodulin binding transcription factors comprises six members in Arabidopsis (Bouche et al., 2002; Finkler et al., 2007). Each protein includes an IQ domain for calmodulin binding; ankyrin repeats for protein interactions; the TIG domain, which has nonspecific DNA binding activity; and the CG-1 domain, which has specific DNA binding activity. The CG-1 domain recognizes the core consensus sequence, vCGCGb, referred to as the CG-1 element (da Costa e Silva, 1994). This sequence matches the CM2 sequence, CCGCGT, and overlaps the ICEr1 element. Thus, the possibility was raised that one or more of the CAMTA proteins might have a role in regulating CBF2 expression.

Literature:

Sequences:

CDS Sequence:
  • >ORGLA04G0075400.1|Oryza_glaberrima|CAMTA|ORGLA04G0075400.1
    ATGAGCCTGAGTTTTGATATCAACGTGCTTCACAAAGAAGCAAGGAGCAGGTGGCTAAAGCCTTCTGAAGTCTACTATATCTTGCAAAATCATGAGAGGTTCCCAATCACCCCTGAACCGCCAAAGAAGCCACCCAGTGGTTCTCTATTCCTTTATAATCGCCGTGTGAATCGGTATTTTCGGAGGGATGGCCATGCATGGCGGAGGAAGAAGGATGGAAGAACTGTTGGGGAGGCTCATGAACGATTGAAGGTTGGAAATGTTGATGCTCTCAGTTGTTATTATGCTCATGGTGAGCAAAATCCATGTTTTCAGAGGCGATGTTTCTGGATGCTGGAACCAGCATATGAACATATTGTGCTGGTACAATATCGAGAAGTAGGAGCAGCTGAGGGTAGATATAATTCAGCATCACTGTTGAATGGGCCAACAGATTCTCTTTCAGTCTTGAGTTATCCAAATGCTACATATGGAAACCAATATCTTGGCTCCACTTCTGGCGTTAGTGATGGTAGTGAATCACGCCATTCTAATTTGAGCTCTGTAACGGAGGTAAGTTCCTATTCTGCAAACAAAGACAATGGTATTCTGCAAAGCATACAGGAGCTCAGCCAGTCAACTATAATGGGTGCACCGGCGCTTGGCCAGAGTAGTCTGGAGCAAAGTATTGAAGTTCGCTGGGTAGATAACAGTAATTCAACAAATAAATCTGGGCTCAACCGAGCTTTGAAGCAAATTGTTGAGCAGTTAAGCTTGGGGGATGATGAGGATGATGACTACATACACCAAGCACAGCCTTTTGACTTCATTACAAATATTGAAGCTCCAGATAGGCAGCGTGATGCAAGCAGAAATGTTTCAGGTGGCAGCCAAGCAAAACAAATTCGAGCAGAAGGAATGCAAAATGGTTTAGGCAGAGGAATACCATCATCATGGGAAGATGTGCTGCAGTCCAGTTCAGGTTTTCCAGCTCCTTCTATATACCAGTCAACTCCCCACTATCCACAAAATTCAGAATATCAACCACCAGGAAGTCTATACAACAGTGATATGCAGCAGATTTCTGCTGCTAAAAGATTTCTTTTGGAGACAGAAGACTCTATTGATTCACCATCTTATAACTATGTGCCCAGAGAAGAAGGAAACAATGGCACTAATACTCTTTCAGTTCATGACTATAGTCTTCAGAGCAGTCTGAACCCAGATTGGAAAAAAACAGCACCTCTAACACTTCAAAGCAATTTGTATGGCTCTGAAATACCAAGCTTATTGTTGGACCATGGTCAGTTTGAATCATTGTCCTCTGGTGAAAATACAAGATTGATCTTGGGTCAAAACCCCCGGTTTAGCATCCGTGAGGTCTCTCCAGAATGGACATACTGCTATGAGATCACCAAGGTCATCATTACTGGAGATTTCTTATGTGATCCATCAAGCTCATGTTGGGCAGTAATGTTTGGTGATAGTGAGGTGCCAGCTGAAATTGTTCAGGCAGGTGTTCTTCGCTGCCACACACCATTACATAGTAGTGGGAAGCTAACAATCTGTGTTACTTCTGGGAATAGAGAAATTTGCAGTGAAGTCAAAGACTTTGAGTTCCGTGCAAAGTCAACAGCTTCTAGTTTCCTAGACATTTCACCATCATCTAGATCTCTGAAATCTAGCGAAGAGTTGTTACTTCTTGCGAAATTTGTAAGAATGCTATTGTGTGAGAATGGAAGTCATGCAAATTCAAACGGTGATCCTCAGTCTGTGCAGTGTCCAAAACTTAAGATGAATGACGAGCACTGGCAGCGGTTGATAGATGAACTCAAAGGAGGATGTGAGAATCCATTAAACGTGTCTGATTGGATTATGGAGGAGCTTCTTAAAAGTAAATTGCAGCAGTGGTTATCAGTTAAGCTACAAGGATATGATGGCATAGCCTGTTCTCTGTCCAAGCATGAGCAGGGTATTATACACTTGATCTCTGCACTAGGCTATGAGTGGGCTCTGTCTTCAATTCTTAGTGCTGATGTTGGTATAAATTTCCGTGATACGAATGGATGGACAGCACTTCATTGGGCTGCTTATTTTGGATGCAGGGAAAAGATGGTTGCTGCACTTCTTGCTGCTGGGGCGTCTGCTCCAGCAGTCACAGACCCCACTGCACAAGATCCAGTGGGAAAAACAGCGGCTTTCCTGGCTTCTGAACGGGGACACTTGGGCCTTGCAGCCTATCTTTCAGAAGTGTCACTAACTAGTTATCTTGCGTCGCTCACTATACAAGAGAGTGATACTTCAAAAGGATCAGCTGCAGCTGAAGCAGAAAGAGCAGTAGAGAGCATATCCCAGAGGAATGCCCAGCTGCATGGTGGTACAGAAGATGAGCTCTCGTTAAAGGACTCTTTGGCAGCCGTGAGAAATGCAGCTCAAGCAGCGGCTCGAATTCAGAACGCTTTCCGTGCCTTCTCTTTCAGGAAGAGACAACAAAAGACTGCTCGACTTAAGGATGAGTATGGGATGACCCAAGAAGATATAGATGAACTTGCAGCTGCATCAAGGTCATATTACCAATCTCTTCTTCCAAATGGTCAGTTTTATGATAAAGCAGCTGTCTCAATTCAGAAGAAATTCAAAGGTTGGAAAGGACGAAGACATTTTCTCAACATGCGCAGGAATGCAGTTAAAATACAGGCTCATGTAAGAGGCCATCAAGTGAGAAAGAAATACAAGACTTTCGTCAGCACTGTCAGTGTGCTAGAGAAAGTGATACTGAGGTGGCGTCGGAAAGGACATGGTCTACGTGGCTTCCGAGCTGAGCAAACAGCAATGGCTGAAGCAGAAGAGGATGACAAGGATGATGATGATGACGACTTCAATGATGATGAAGCAGTCAAAGTGTTCCGCCGACAGAAGGTTGATGAATCTGTCAAGGAGGCTATGTCAAGAGTACTGTCCATGGTGGACTCTCCTGAAGCAAGGATGCAATATCGTCGAATGCTTGAGGAATTTCGACAAGCCACTGTAAGTGCTGAATAG
Protein Sequence:
  • >ORGLA04G0075400.1|Oryza_glaberrima|CAMTA|ORGLA04G0075400.1
    MSLSFDINVLHKEARSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCFQRRCFWMLEPAYEHIVLVQYREVGAAEGRYNSASLLNGPTDSLSVLSYPNATYGNQYLGSTSGVSDGSESRHSNLSSVTEVSSYSANKDNGILQSIQELSQSTIMGAPALGQSSLEQSIEVRWVDNSNSTNKSGLNRALKQIVEQLSLGDDEDDDYIHQAQPFDFITNIEAPDRQRDASRNVSGGSQAKQIRAEGMQNGLGRGIPSSWEDVLQSSSGFPAPSIYQSTPHYPQNSEYQPPGSLYNSDMQQISAAKRFLLETEDSIDSPSYNYVPREEGNNGTNTLSVHDYSLQSSLNPDWKKTAPLTLQSNLYGSEIPSLLLDHGQFESLSSGENTRLILGQNPRFSIREVSPEWTYCYEITKVIITGDFLCDPSSSCWAVMFGDSEVPAEIVQAGVLRCHTPLHSSGKLTICVTSGNREICSEVKDFEFRAKSTASSFLDISPSSRSLKSSEELLLLAKFVRMLLCENGSHANSNGDPQSVQCPKLKMNDEHWQRLIDELKGGCENPLNVSDWIMEELLKSKLQQWLSVKLQGYDGIACSLSKHEQGIIHLISALGYEWALSSILSADVGINFRDTNGWTALHWAAYFGCREKMVAALLAAGASAPAVTDPTAQDPVGKTAAFLASERGHLGLAAYLSEVSLTSYLASLTIQESDTSKGSAAAEAERAVESISQRNAQLHGGTEDELSLKDSLAAVRNAAQAAARIQNAFRAFSFRKRQQKTARLKDEYGMTQEDIDELAAASRSYYQSLLPNGQFYDKAAVSIQKKFKGWKGRRHFLNMRRNAVKIQAHVRGHQVRKKYKTFVSTVSVLEKVILRWRRKGHGLRGFRAEQTAMAEAEEDDKDDDDDDFNDDEAVKVFRRQKVDESVKEAMSRVLSMVDSPEARMQYRRMLEEFRQATVSAE