Information report for orange1.1g001754m
Gene Details
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Functional Annotation
- Refseq: XP_006488760.1 — calmodulin-binding transcription activator 3-like isoform X1
- Refseq: XP_006488761.1 — calmodulin-binding transcription activator 3-like isoform X1
- Refseq: XP_024033801.1 — calmodulin-binding transcription activator 3 isoform X1
- Refseq: XP_024033834.1 — calmodulin-binding transcription activator 3 isoform X1
- TrEMBL: A0A067G170 — A0A067G170_CITSI; Uncharacterized protein
- STRING: XP_006488760.1 — (Citrus sinensis)
- STRING: XP_006419272.1 — (Citrus clementina)
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- The CAMTA family of calmodulin binding transcription factors comprises six members in Arabidopsis (Bouche et al., 2002; Finkler et al., 2007). Each protein includes an IQ domain for calmodulin binding; ankyrin repeats for protein interactions; the TIG domain, which has nonspecific DNA binding activity; and the CG-1 domain, which has specific DNA binding activity. The CG-1 domain recognizes the core consensus sequence, vCGCGb, referred to as the CG-1 element (da Costa e Silva, 1994). This sequence matches the CM2 sequence, CCGCGT, and overlaps the ICEr1 element. Thus, the possibility was raised that one or more of the CAMTA proteins might have a role in regulating CBF2 expression.
Literature and News
Gene Resources
- Pfam: PF02458
- Gene3D: G3DSA:3.30.559.10
- PROSITE profile: PS51437
- SMART: SM01076
- Pfam: PF03859
- Gene3D: G3DSA:2.60.40.10
- Pfam: PF01833
- SuperFamily: SSF81296
- Gene3D: G3DSA:1.25.40.20
- PROSITE profile: PS50297
- SuperFamily: SSF48403
- Pfam: PF12796
- SMART: SM00248
- PROSITE profile: PS50088
- SuperFamily: SSF52540
- SMART: SM00015
- PROSITE profile: PS50096
- Pfam: PF00612
- InterPro: IPR003480 IPR023213 IPR005559 IPR013783 IPR002909 IPR014756 IPR020683 IPR002110 IPR027417 IPR000048
Homologs
- Malus domestica: MDP0000265800
- Manihot esculenta: Manes.03G210600.1.p
- Populus trichocarpa: Potri.010G153100.3, Potri.010G153100.1, Potri.010G153100.4, Potri.010G153100.5, Potri.010G153100.2
- Prunus mume: XP_008223475.1
- Prunus persica: Prupe.1G108700.5.p, Prupe.1G108700.3.p, Prupe.1G108700.2.p, Prupe.1G108700.1.p, Prupe.1G108700.4.p
- Pyrus bretschneideri: Pbr014973.1
- Ricinus communis: 29889.m003372
- Vitis vinifera: GSVIVT01017670001
- Ziziphus jujuba: XP_015900131.1
Sequences
CDS Sequence:
- >orange1.1g001754m|Citrus_sinensis|CAMTA|orange1.1g001754m
ATGGCTCAGACTAGACGATATGTTCCTAATCAACAATTAGATCTTGAACAGATATTGCAAGAAGCACAGTATCGTTGGCTACGACCAACTGAAATTTGTGAGATACTTCGTAACTATCAGAAGTTCCACTTAACACCAGATCCACCTGTTAGGCCTCCAGCTGGTTCATTATTCCTGTTTGATCGAAAAGCACTTCGATATTTTCGTAAGGATGGCCACCGATGGAGGAAAAAGAAAGATGGAAAAACCGTCAAAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTATTGATGTTCTTCATTGTTACTATGCCCATGGAGAGGACAATGAGAACTTCCAGCGACGGAGTTATTGGATGCTTGATGGGCAGTTAGAGCACATCGTTCTTGTGCATTACAGAGAAGTAAAAGAGGGATACAAATCTGGCCGTTCGGCAGCGGACCCTGGATCACAGATTGAAAGCTCTCAAACTAGTTCAGCTCGCTCCTTAGCACAAGCAAACTCCTCCGCACCTGCTGCTCAGACTTCTCATGCATCAATCCCCAACAAAATTGATTGGAATGGACAAGCAGTATCTTCAGAGTTTGAGGATGTGGATTCTGGGCATGGTTCTGGAACCCCTTCTGTTGCTCAATCTATTTATGGTTCCATGTCGCAGAATGCTTCTTTAGTTGCTGCAAGCATTGCTGGACTTCCGGAGTTATCGAGACATCCTCAATGGTTTGCTGGATCTAAAATTAACCATGGCTCTGGATCATCTATGTGGCCTCAAATTGACAATTCAAGCCGAAATGCTACCAGTGTTCTTGACCAGCATGGTCACCAGAATTTTTATGTTGGACAACCTAGTGGAGCTGACTTTATTACCCATAAGCTGACTGATGCTAGATTGGCTAGTGATAGCACCATTGCAAATATTGGAACTTGCGGGGAGAGATTAATTACCGATATAGATGTGCATGCTGTCACAACATCATCTCAAGGAGCATCTCAGGTGCTGCTGGAGCACAATTTCAATTTAATTAATAACCAGTGCCAAAATTGTCCTGTCCCTGAGGTGACAGTTGCTTCTGTCTCTCAGGCTGGGATCAAACCCAAGGAAGAATTAGGAGAGCTGAAGAAACTTGACAGTTTTGGCAGATGGATGGATCAAGAAATTGGTGGAGATTGTGATGATTCCCTTATGGCTTCAGACTCTGGAAATTATTGGAATACGCTTGATGCTGAGAATGATGACAAGGAAGTATCCAGTTTGTCACACCATATGCAGTTAGAGATGGATTCGCTTGGCCCTTCTCTTTCCCAGGAGCAGCTGTTTAGTATTCGTGATTTCTCACCAGATTGGGCTTATTCTGGGGCTGAAACCAAGGTTTTAATCATAGGCATGTTTTTGGGAACCAAAAAGCTATCAAGTGATACTAAATGGGGATGTATGTTTGGTGAAATTGAAGTCCCTGCAGAAGTCTTGACAGATAATGTCATCCGATGTCAAGCTCCTTCCCATGCAGCAGGGCGTGTTCCATTTTATATCACCGGCAGTAACAGATTAGCATGCAGTGAGGTGAGGGAGTTTGAGTATCGTGAAAAACCATCCAAAGCTGGATATCCTGTGGCATCTAAAATTGCACCAGAGGACGAAGTGCGCTTGCAAACACGTCTAGCAAAGTTTTTGTATCTGGACCCAGAGAGGAAGTGGTTTGATTGTACTATTGAAGATTGTAATAAATGTAAGCTGAAAAATACCATATATTCAATGAGAGGTGACAGTGAAAAGGATTGGGGACGAGTTGACGAGAGTCCAATGGCCATTGAAGGTGACTGCCCAAATTCTAGAGATAAATTAATTCAAAATTTGCTGAGGAACAGACTTTGTGAATGGCTGGTCTGGAAAATTCATGAAGGAGGTAAAGGTCCAAATGTAATTGATGATGGTGGACAAGGAGTTGTACACTTGGCTGCCGCTCTTGGCTATGAATGGGCTATGAGGCCCATAATAGCCACTGGTGTCAGTCCCAATTTCAGAGATGCACGAGGAAGGACAGCACTTCACTGGGCATCTTATTTTGGGAGGGAGGAAACTGTCATCATGCTTGTTAAGTTGGGAGCAGCTCCGGGTGCGGTTGAGGATCCAACACCAGCATTTCCTGGAGGGCAAACTGCTGCTGATTTAGCATCCAGCAGAGGACATAAAGGGATTGCTGGATACTTGGCTGAGGCAGATTTATCCAGTCACCTTTCTTCATTAACTGTCAATGAGAATGGGATGGACAATGTTGCTGCGGCTCTTGCAGCTGAAAAGGCTAATGAAACTGCAGCTCAAATTGGTGTACAGTCAGATGGGCCAGCAGCTGAGCAGCTTTCTTTGAGAGGGTCTCTTGCTGCTGTTAGGAAATCAGCTCATGCTGCTGCTCTGATACAGCAAGCCTTTCGGGTTCGTTCGTTCCGTCATAGACAATCAATTCAGAGCAGTGACGATGTTTCTGAAGTTTCGGTTGACCTAGTTGCCCTTGGCTCTTTGAACAAGGTTTCAAAGATGATTCATTTTGAGGATTATCTGCATTTTGCAGCTATAAAGATCCAACAAAAATATCGCGGTTGGAAAGGGAGAAAAGATTTTTTGAAAATACGCAATCATATTGTAAAACTCCAGGCTCATGTGAGAGGACATCAAGTACGCAAGCAATATAAAAAGGTTGTTTGGTCGGTCAGTATTGTGGAGAAGGCGATATTGCGTTGGAGGAGAAGAGGGTCAGGTTTGCGAGGATTTCGGGTGGGAAATTCAACTGCCAATGTGGCATCAGAAAATGAGAAAACAGACGAATATGAGTTCTTGCGAATTGGCCGGAAGCAGAAATTTGCTGGCGTTGAAAAGGCTTTAGAAAGAGTAAAATCCATGGTTCGTAATCCAGAAGCACGGGATCAGTATATGAGGATGGTCGCAAAATTTGAAAATTTTAAAATGTGTGATGACGGAAGCGGTTTGCTGTCACAAGGTGAAGATTCTCTGAATGGTCCAACCAAGGACAATTTGCACGCATATGTAGCTGATCAATGA
Protein Sequence:
- >orange1.1g001754m|Citrus_sinensis|CAMTA|orange1.1g001754m
MAQTRRYVPNQQLDLEQILQEAQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDNENFQRRSYWMLDGQLEHIVLVHYREVKEGYKSGRSAADPGSQIESSQTSSARSLAQANSSAPAAQTSHASIPNKIDWNGQAVSSEFEDVDSGHGSGTPSVAQSIYGSMSQNASLVAASIAGLPELSRHPQWFAGSKINHGSGSSMWPQIDNSSRNATSVLDQHGHQNFYVGQPSGADFITHKLTDARLASDSTIANIGTCGERLITDIDVHAVTTSSQGASQVLLEHNFNLINNQCQNCPVPEVTVASVSQAGIKPKEELGELKKLDSFGRWMDQEIGGDCDDSLMASDSGNYWNTLDAENDDKEVSSLSHHMQLEMDSLGPSLSQEQLFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNRLACSEVREFEYREKPSKAGYPVASKIAPEDEVRLQTRLAKFLYLDPERKWFDCTIEDCNKCKLKNTIYSMRGDSEKDWGRVDESPMAIEGDCPNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQIGVQSDGPAAEQLSLRGSLAAVRKSAHAAALIQQAFRVRSFRHRQSIQSSDDVSEVSVDLVALGSLNKVSKMIHFEDYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASENEKTDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVADQ*