Information report for mrna10891.1-v1.0-hybrid
Gene Details
|
|
Functional Annotation
- Refseq: XP_004301509.1 — PREDICTED: MATH domain and coiled-coil domain-containing protein At3g58270-like
- TrEMBL: A0A2P6QCU8 — A0A2P6QCU8_ROSCH; Putative ubiquitinyl hydrolase 1
- STRING: XP_004301509.1 — (Fragaria vesca)
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- The CAMTA family of calmodulin binding transcription factors comprises six members in Arabidopsis (Bouche et al., 2002; Finkler et al., 2007). Each protein includes an IQ domain for calmodulin binding; ankyrin repeats for protein interactions; the TIG domain, which has nonspecific DNA binding activity; and the CG-1 domain, which has specific DNA binding activity. The CG-1 domain recognizes the core consensus sequence, vCGCGb, referred to as the CG-1 element (da Costa e Silva, 1994). This sequence matches the CM2 sequence, CCGCGT, and overlaps the ICEr1 element. Thus, the possibility was raised that one or more of the CAMTA proteins might have a role in regulating CBF2 expression.
Literature and News
Gene Resources
- Pfam: PF02458
- Gene3D: G3DSA:3.30.559.10
- PROSITE profile: PS51437
- SMART: SM01076
- Pfam: PF03859
- Gene3D: G3DSA:2.60.40.10
- Pfam: PF01833
- SuperFamily: SSF81296
- Gene3D: G3DSA:1.25.40.20
- PROSITE profile: PS50297
- SuperFamily: SSF48403
- Pfam: PF12796
- SMART: SM00248
- PROSITE profile: PS50088
- SuperFamily: SSF52540
- SMART: SM00015
- PROSITE profile: PS50096
- Pfam: PF00612
- InterPro: IPR003480 IPR023213 IPR005559 IPR013783 IPR002909 IPR014756 IPR020683 IPR002110 IPR027417 IPR000048
Homologs
- Arabidopsis thaliana: AT3G16940.1
- Cajanus cajan: C.cajan_29510
- Cicer arietinum: XP_012573334.1
- Glycine max: Glyma.19G203700
- Malus domestica: MDP0000233860
- Prunus avium: Pav_sc0001147.1_g110.1.mk
- Prunus mume: XP_008223309.1, XP_008223308.1
- Prunus persica: PRUPE_2G052600, PRUPE_2G052500, PRUPE_2G054900, Prupe.1G122800.7.p
- Rosa chinensis: RchiOBHm_Chr5g0041491, RchiOBHm_Chr1g0330191, RchiOBHm_Chr1g0330151, RchiOBHm_Chr1g0330141, RchiOBHm_Chr1g0330181, RchiOBHm_Chr1g0330121
Sequences
CDS Sequence:
- >mrna10891.1-v1.0-hybrid|Fragaria_vesca|CAMTA|mrna10891.1-v1.0-hybrid
ATGGACAAACCGCTTGTGGGTTCCGAGATTCATGGATTTCATACAATGCAAGATTTGGATGTCGACACTATTATGGAGGAAGCCAAAGGGAGATGGCTCCGCCCAAAAGAAATCCATGCATTACTCTATAACTACAAGTATTTCACCATCCATGTCAAGCCAGTGAACTTGCCCCCAAGTGGCACCATTGTATTGTTTGACCGTAAGATGCTTAGAAACTTCAGGAAAGATGGTCATAACTGGAAAAAGAGAAAAGATGGGAAGACAGTCAAAGAATCTCATGAACACTTGAAAGCCGATGGGTTGCCCACATGTGGTATGGAGTTTGGAACCCTCATGGTTGGTGATGAAGAAAGGATTGATGTATACTATGCCCATGGTGAGGATAGCCCAATCTTTGTCCGGAGGTGTTATTGGCTGCTTGATAAGACTCTAGAAGACATAGTTCTTGTTCATTACCGTGAAACACAGGAGGCCGTGGCGGGCGCTGCTCTTCACGCCGTTGAGAAGGATGAGTGCAGTGTAGCTCCACTTGGGTCTGTTGCTGCTAGTAAAATGAAGCATGGGAAGGCTGATAAATTGAATCAAGGAAATGCTAGACTGAAGAATCTAAGGGTGCGTAAACTTATTCAGAAGGCTCGTATAATGAGGAAGCGGAAAGTGGAGGAGGATCATGAAACTGTGACATTCACATGGAGAATTAACAGTTTCTCTAAACTATACACCTTCAAGCATTACTCCGAGATTTTCAGCATCGGTGATTTCAAATGGCGGATCCTTATGTATCCAAAGGGAAACAAGGAGGACCACTTATCGGTGTACTTGGATATTTCATCTACTACGGCATTCCCACTTGGCTGGTCTAAATATGCCAAATTCAGCTTAACCTTGGTTAATCAACTTTGGCGCCGCAAGTCAATAACAAAGGAGATTCATGTGTTCAAAGATTGTGAGATGGATTATTGTGGCTTCAAATCATTAGTTCCTCTTAGTCAATTCTATGACTATGGTAATGGGTACATTGTGAATGATATATGCATAATTGAAGCCAAGGTTGCAGTGCGTAAAGATGATGCAAAGATTTTACAAGACCATGGAATTTCTGCATGTATGGAACCCTTAGAGAAGGAAAAAGAAGGGCAGGGACCGTCAAATGCGCAGCCTGTGAATGTTCCAGATATTTCCGCACAATTGGAGACACCGTGTTGTGAACAGGTGCCTGCCAGCTACCACAGTGCACCAATTTCTGAACAAATTGGCACTGACCTTCCTAACATTTCCATTCCCAAGGGAATTAAGGACGTGTTGTCCACATCAGCTGATGAGCTAATGGATTTCAGGGGTTTAGCCAAAATAGAAAAGGCTTGTGTTCCACTGTTAGATGAAGTTTGTTCCTGTCACTCTTCTCTCATTAAATGCCAAATGAAGCGAAGTCCAAAGTTTAAAGAGTGGGCATTCACAGCCTTAGGCCGAGTTCTACATTTTTTGAAAACAAAAATGGTTAAAGATATGACAGATGATGTCTGTGCAGAGCTAGAATGTCTATGGGAAGAGCTCCAGGCCTTCAAATTTGACTTGGCTTGGCTGAAGCCTTATGTTGAAAGAGCTTTGTGTGTCAATAAGTTGGTCAAAAGGGAAGTACAGAGCTTGAGAAAGGGTGTGGATGAATTGGAGATTGAAAAGAAGAGGCTAATGGCTAAGCTTGAGGTAGCAAGAAGAGAATTGGAAAAGGTCGAAGGTGTTGAGAAGATGGACATGGATAAGGTGCTAGGTTATGGGGGTTGGCCGTTCTGTGGAATTCTGAATTTTGAGAATTGTCCTTGA
Protein Sequence:
- >mrna10891.1-v1.0-hybrid|Fragaria_vesca|CAMTA|mrna10891.1-v1.0-hybrid
MDKPLVGSEIHGFHTMQDLDVDTIMEEAKGRWLRPKEIHALLYNYKYFTIHVKPVNLPPSGTIVLFDRKMLRNFRKDGHNWKKRKDGKTVKESHEHLKADGLPTCGMEFGTLMVGDEERIDVYYAHGEDSPIFVRRCYWLLDKTLEDIVLVHYRETQEAVAGAALHAVEKDECSVAPLGSVAASKMKHGKADKLNQGNARLKNLRVRKLIQKARIMRKRKVEEDHETVTFTWRINSFSKLYTFKHYSEIFSIGDFKWRILMYPKGNKEDHLSVYLDISSTTAFPLGWSKYAKFSLTLVNQLWRRKSITKEIHVFKDCEMDYCGFKSLVPLSQFYDYGNGYIVNDICIIEAKVAVRKDDAKILQDHGISACMEPLEKEKEGQGPSNAQPVNVPDISAQLETPCCEQVPASYHSAPISEQIGTDLPNISIPKGIKDVLSTSADELMDFRGLAKIEKACVPLLDEVCSCHSSLIKCQMKRSPKFKEWAFTALGRVLHFLKTKMVKDMTDDVCAELECLWEELQAFKFDLAWLKPYVERALCVNKLVKREVQSLRKGVDELEIEKKRLMAKLEVARRELEKVEGVEKMDMDKVLGYGGWPFCGILNFENCP*