Information report for Lsa003784
Gene Details
Functional Annotation
- Refseq: XP_023764288.1 — calmodulin-binding transcription activator 3-like isoform X1
- TrEMBL: A0A2J6LCN9 — A0A2J6LCN9_LACSA; Uncharacterized protein
- STRING: cassava4.1_023110m — (Manihot esculenta)
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- The CAMTA family of calmodulin binding transcription factors comprises six members in Arabidopsis (Bouche et al., 2002; Finkler et al., 2007). Each protein includes an IQ domain for calmodulin binding; ankyrin repeats for protein interactions; the TIG domain, which has nonspecific DNA binding activity; and the CG-1 domain, which has specific DNA binding activity. The CG-1 domain recognizes the core consensus sequence, vCGCGb, referred to as the CG-1 element (da Costa e Silva, 1994). This sequence matches the CM2 sequence, CCGCGT, and overlaps the ICEr1 element. Thus, the possibility was raised that one or more of the CAMTA proteins might have a role in regulating CBF2 expression.
Literature and News
Gene Resources
- Pfam: PF02458
- Gene3D: G3DSA:3.30.559.10
- PROSITE profile: PS51437
- SMART: SM01076
- Pfam: PF03859
- Gene3D: G3DSA:2.60.40.10
- Pfam: PF01833
- SuperFamily: SSF81296
- Gene3D: G3DSA:1.25.40.20
- PROSITE profile: PS50297
- SuperFamily: SSF48403
- Pfam: PF12796
- SMART: SM00248
- PROSITE profile: PS50088
- SuperFamily: SSF52540
- SMART: SM00015
- PROSITE profile: PS50096
- Pfam: PF00612
- InterPro: IPR003480 IPR023213 IPR005559 IPR013783 IPR002909 IPR014756 IPR020683 IPR002110 IPR027417 IPR000048
Sequences
CDS Sequence:
- >Lsa003784|Lactuca_sativa|CAMTA|gnl|UG|Lsa#S58696859
ATGGCTGACACAAAATGTTACATTCCCAATCAATTGTTAGATTTGGATCAAATACAGCAAGAAGCACAGCATCGGTGGTTGCGACCTGCTGAAATTTGTGAAATTCTAACCAACTATCATAAGTTTCAACTGAGACCTAGTCCACCTGTCATGCCACCAGCTGGTTCTTTATTTCTCTTTGATCGAAAAGTGATTCGATACTTTCGAAAAGATGGTCATCGTTGGAGGAAGAAGAAAGATGGAAAGATTGTTAAAGAAGCTCATGAAAAATTAAAGGCAGGCAGTGTGGATGTTCTTCACTGTTACTATGCACATGGAGAAGATAATGAGAACTTTCAGAGAAGAAGCTACTGGATGCTTGATAAGCAGTATGAGAATATTGTTCTTGTGCACTATAGGGAGGTTAAAGAGGGATACAAGTCAAGTTTCTCCCGTGGGTTAAATCCAGATTCAAGAACACTGCTTCAAAACTCTCAAAGCAGTGAACAAACACCACATACTTCATATGGTTATGATATGAATTCAGTTGATAAAAACGAACAATCAGTGTCTTCAATATCAAATAACGAGCACTCTTCACAAGATTTTGGGATTGATTCATTTACAACTGATTTGCTATCTTACAAACTAACAGATGCTAGGTTAGATTCTGACACACATTCTCAAGATTTCTTGAACTCTGGGAATGGCTTTTTTTCTGATCATGAAGTTGCATCACAGGTCAATGTAAATACTGAAGTGATAAACTTACAAGATAATGATGCTGGAGGACTGAAAAAGATGGACAGCTTTGGAAGGTGGATGTGTAAAGAATTGGGTGGAGAGTTTGATGATTCCCTGATGGCATCCGATTCCGGGGTTTACTGGAATGCAATTGAAACCGAAACTGGAAACAATAAAACTGAAGTCTCGAGCTTATCACACCATATGCAGTTGAATACAAGCCCTGTGGGTCCCTCTTTAGCCCAAGAACAGCTCTTTACTATAACCGATTTTGCACCAGATTGGGCATATTTAGAAACAGAAACAAAGATTTTAATAACAGGGAATTTCTTGGGTGACAAGAAACGTATGAATGACATAAAATGGTGTTGCATGTTTGGTGAAATCGAAGTGGCAGCTGAACTTTTGACAGAAAATGCCATTAGATGTCAGGTTCCTTTACATGCTGCAGGGCGTATTCCATTTTACATTACCTGTAGCAATCGATTAGCTTGTAGTGAAGTGCGTGAGTTTGAGTATATTGATAAGTCAACAAGATTAACAACAGATCATCATCATCATCGTGATGATGATAAAACTTGGGATGAAGAGGAATTCGGTTTAGTAATTCGTCTTTCGAAATTATTATCTTTGGGGGTTAAATTGAACAAATGGTTAGACTGCAAGGTGGTAGATTGTGAAAAATGTAAGATGAAGGATGTGTTTGATTTGATTTTAAGAAACAAAGAATGGTGTTCAAATAGAATCACAAAGGAGTTGCTAATACAGAATTTGCTGAAAGATAAACTTTATGAGAGATTAGTTTATGAAGTCCATGAAGCATGTGAAGGATTGCGTGTGTTGGATGAAAAAGGACAAGGTGTTATTCATTTGGCCGGAGCTCTTGGTTATGAGTGGGCGGTTGCTCCGATCACCGCCACCGGTGTCAGCCCTAATTTCAGAGATTCACATGGCCGGACCGCCCTCCATTGGGCTTCACTTTATGGCAGAGAGGAAACAGTGGTGGCACTGATGAAATTTGGTGCGTATGCAGGGGCGGTTGATGACCCAACACCTATGAATCCAGGTGGACAAACGGCTGCTGATCTGGCATCAAGTAAAGGGCATAAAGGGATTGCTGGATATTTGGCAGAAACTGATCTCACCACTCATCTTTCAGCATTGTCTGTGAAGGAAAAGGACAAGAATGGTGTCAAAAGTGAAGTGTTAGTGGATGATGATGATGCTACACATTCACATTCTTTAAAAGGGTCACTTGCAGCAGTGAGAAGATCAGCACATGCAGCTGCTTTAATTCAAGATGCTTTCAGAACTCGTTCTTTCAATCAAAGGCAACAACAAGCAACAAAGGCAGAAACTGAAGAACTTGTTGCTATAGCTTCTTCTTCTTCTTTACAGAAGGTCAAGAAAACACGTGATTATGAAGACTATTTGCATCTGAACATTGCAGCATCAAAGATCCAGCAAAAGTACAGGGGGTGGAAAGGAAGGAACGAGTTCTTAAAGATGCGTGAGCGTGTTGTCAAGATTCAGGCGCATTTTCGTGGGCATAAAGTTAGAAAGCATTATAAAAAAGTGGTGTGGTCTGTTGGGATAGTGGAGAAAGCGATACTCAGATGGAGACGAAAGAGCCGTGGGTTGCGAGGATTCCGGCCGGAATTGAGAGCTCCGGAATCGGAATCGGAATCGGAATATGATTTCCTGAGAATAGGTCGGAGACAGAAATATGTTGGGGTGGAAAAGGCGTTGGCTAGGGTGCATTCCATGGCTCGGAATCCTGAAGGCCAGGAACAGTACATGAGGCTTGTGGGGAAGTTTGAAAAGTTGAGCCATGAACATGAAGATAGCAGCAGCAGCAAATGA
Protein Sequence:
- >Lsa003784|Lactuca_sativa|CAMTA|gnl|UG|Lsa#S58696859
MADTKCYIPNQLLDLDQIQQEAQHRWLRPAEICEILTNYHKFQLRPSPPVMPPAGSLFLFDRKVIRYFRKDGHRWRKKKDGKIVKEAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDKQYENIVLVHYREVKEGYKSSFSRGLNPDSRTLLQNSQSSEQTPHTSYGYDMNSVDKNEQSVSSISNNEHSSQDFGIDSFTTDLLSYKLTDARLDSDTHSQDFLNSGNGFFSDHEVASQVNVNTEVINLQDNDAGGLKKMDSFGRWMCKELGGEFDDSLMASDSGVYWNAIETETGNNKTEVSSLSHHMQLNTSPVGPSLAQEQLFTITDFAPDWAYLETETKILITGNFLGDKKRMNDIKWCCMFGEIEVAAELLTENAIRCQVPLHAAGRIPFYITCSNRLACSEVREFEYIDKSTRLTTDHHHHRDDDKTWDEEEFGLVIRLSKLLSLGVKLNKWLDCKVVDCEKCKMKDVFDLILRNKEWCSNRITKELLIQNLLKDKLYERLVYEVHEACEGLRVLDEKGQGVIHLAGALGYEWAVAPITATGVSPNFRDSHGRTALHWASLYGREETVVALMKFGAYAGAVDDPTPMNPGGQTAADLASSKGHKGIAGYLAETDLTTHLSALSVKEKDKNGVKSEVLVDDDDATHSHSLKGSLAAVRRSAHAAALIQDAFRTRSFNQRQQQATKAETEELVAIASSSSLQKVKKTRDYEDYLHLNIAASKIQQKYRGWKGRNEFLKMRERVVKIQAHFRGHKVRKHYKKVVWSVGIVEKAILRWRRKSRGLRGFRPELRAPESESESEYDFLRIGRRQKYVGVEKALARVHSMARNPEGQEQYMRLVGKFEKLSHEHEDSSSSK