Information report for IGS.gm_4_00307
Gene Details
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Functional Annotation
- Refseq: XP_005850100.1 — hypothetical protein CHLNCDRAFT_142166
- TrEMBL: E1Z7X7 — E1Z7X7_CHLVA; Uncharacterized protein
- STRING: XP_005850100.1 — (Chlorella variabilis)
- GO:0009409 — Biological Process — response to cold
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0071275 — Biological Process — cellular response to aluminum ion
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction
- The CAMTA family of calmodulin binding transcription factors comprises six members in Arabidopsis (Bouche et al., 2002; Finkler et al., 2007). Each protein includes an IQ domain for calmodulin binding; ankyrin repeats for protein interactions; the TIG domain, which has nonspecific DNA binding activity; and the CG-1 domain, which has specific DNA binding activity. The CG-1 domain recognizes the core consensus sequence, vCGCGb, referred to as the CG-1 element (da Costa e Silva, 1994). This sequence matches the CM2 sequence, CCGCGT, and overlaps the ICEr1 element. Thus, the possibility was raised that one or more of the CAMTA proteins might have a role in regulating CBF2 expression.
Literature and News
Gene Resources
- Pfam: PF02458
- Gene3D: G3DSA:3.30.559.10
- PROSITE profile: PS51437
- SMART: SM01076
- Pfam: PF03859
- Gene3D: G3DSA:2.60.40.10
- Pfam: PF01833
- SuperFamily: SSF81296
- Gene3D: G3DSA:1.25.40.20
- PROSITE profile: PS50297
- SuperFamily: SSF48403
- Pfam: PF12796
- SMART: SM00248
- PROSITE profile: PS50088
- SuperFamily: SSF52540
- SMART: SM00015
- PROSITE profile: PS50096
- Pfam: PF00612
- InterPro: IPR003480 IPR023213 IPR005559 IPR013783 IPR002909 IPR014756 IPR020683 IPR002110 IPR027417 IPR000048
Sequences
CDS Sequence:
- >IGS.gm_4_00307|Chlorella_variabilis_NC64A|CAMTA|IGS.gm_4_00307
ATGGACATCGCGGCGTCCGTGGCGGCCGTGGTGGACAAGGCCCGCACCAGTTGGCTGAAAAATGCAGAAGTGTTGGAGCTGCTGGAGGGCTTCGCAGGGGCGGGTCTCGCAGTCTGCCAGGAGCCGCCCGTGAGGCCAGCAGGCGGCCAGCTCTTCCTCTTTGACAGGCGCATCTGCCGCTTCTTCCGCCGCGATGGGCACACGTGGCGCAAGAAGCCCGACGGCAAGACCATCAGGGAGACCCACGAGAAGCTGAAAGTGGGCAATGCGGAAACGCTAAACTGCTACTATGCACATGCCGACCAGGAAGATGGGCTGCAGCGCCGCTGCTACTGGCAGCTGGACCCAGAGAAGGAGCACATCGTGCTGGTGCACTACCTGTGCTGCGCCAGCAGCCGCGCCGGCACGCAGCGCGCGGCGTCGGCTGAGCTGGCGGGCGACGTGGCGGCGGGGTGCACGCCCCGCCCGCAGCGCGCCTCGCGCCAGCAGCACCGCCGCGCCTACTCGCCGCCGCCCGGCGCGGCGTCGGCGGCCGGCGGCCGCCGCCGCGGCGCCAGCCAGACCAAGCTCTCCCCTCTGGCCACCGCCGCCTCCCTAGAGAGCGACCTGGTCAGCCAGGGCAGCGGGGAGACGGAGCTGCCGCTGGTACAGGGCATGACGCTGGAAGCTGCCGCTGCGCTGCCCTCTCTGGCGCAGCAGTATGCGATGCAGCAGCAGGCGGCGGCCGTCGTGCAGCAGCAGATGCAGCTGCAGCAGCTGCTGCAGAGCGGCGGCAGCGGCGGCAGCGGCTCCGGCAGCGGCGAGTTCGATCCCTTTGCGCTGCCCGCGGTGCCGGAGCACCACCGGCCGCTGCCGGGCGTGCTGTACACAGACCAGCGCGTGGCCACGCAGCTGTCGGCAGCAGCCGCCGCGCAGCAGGCCTCGGTCCACTCCCCGCTGCTGCCGCCGCGGCCGCTGATGAAGCAGGAGAGCTTCCAGGCCGACCAGCACAAGGCTCTGTTCCGAGAGATGTCGCTGGGCATCCAGCGCGAGGCGACAGAGGAGGGCGGCTACTTCCTGGGTTCGCCGGGCGAGCCGGACCCTCTGGGCACCGACAAGGCGGCAGCCAGCACCCCCGGCCCCGACCTGGCCGCCCTGCTGGCGTCGCCGCCCCACGGCGGCCACCGCCGCAGCTTCAGCCGCCAGGGCTCCGGCCTGTCCCGCCTCATCAGCAAAAACTGGGAGAACGATGTGATGGAGATGATGCTGCCTGACGTGGACTCCGACATCAGCGCCTATCCCATGGAGCGAGTGGTGGTGGAGGTGGCGCAGCGGCCCAGCAGCCCCGGCTCGCGCCTCTTCGACCAGGCCGGCATCGCCTTTTTCGGCAGCGCACACAGCGCCGCCACCGCGGTGCAGCACGCGCTGGAGCCCTCGCCGCTGGGCCTGGCGCCCGGCGGCGAGTCGCCGCTGGAGTTTGCTGCGGGGGAAGCGCACGCCAGGGCGCAGCGGCCGCGCCTGGCGCGGGTGTCTGGCGCGGGCATGCCTCGCAGCGGCAGCCACCCCCATCTGGCGCACCTGGCCAAGCGGCCCGGCGGGGCCGGCGCCGAGGCGGGCAGCGAGGAGGAGCGGCGCAAGGAGCGGGTGGATGCTGCGGCCGTCGCCGCCGCCTATGCCGCGCAGGAGCACCGCGACGAGAAGCTGGCGGCGGTGCGCAGCCAGCGGGCGGCCAGCAGCACGGAGGCAGAGGACACGCTAGAGATGATTGATGTGCCCGAGAACCTGCAGCGCCTCAGCTCCTTCCTGCACCGCGGCCCCGCCTCGGGCGCGCGCCTGACGCTGGGCCGCGAGCTGGCGGCGGCCGAGGCGTCTGCGGTGGCTGACCTGGAGCTGGAGGCTCGCAGCCTGCTGAAGCACATGAGCATCGACGAGGTGGACGCGGTGGCTGCCGTGCGGGATGCGGCCAAGGAGCTGGAGGTGATGCCCACCATCTACGCCGCGCCCAGCAGCGAGCTGGAGGCGGCCAGCGGCGCGCCCAGCCACCGCGACAGCCAGTCGGAGGAGCTGGGCAGCCGGGGCCACTCGGCGACCAGCCTGCTGGACGGCCTGCAGGTGGCGACGTCGGGGGTGGCGGGGCAGCCGCTGGACCCCATTGCCCAGCAGCTGCAGGCCGCCATGGCGCAGCACGCCGCGCGCCAGGCAAGGTGA
Protein Sequence:
- >IGS.gm_4_00307|Chlorella_variabilis_NC64A|CAMTA|IGS.gm_4_00307
MDIAASVAAVVDKARTSWLKNAEVLELLEGFAGAGLAVCQEPPVRPAGGQLFLFDRRICRFFRRDGHTWRKKPDGKTIRETHEKLKVGNAETLNCYYAHADQEDGLQRRCYWQLDPEKEHIVLVHYLCCASSRAGTQRAASAELAGDVAAGCTPRPQRASRQQHRRAYSPPPGAASAAGGRRRGASQTKLSPLATAASLESDLVSQGSGETELPLVQGMTLEAAAALPSLAQQYAMQQQAAAVVQQQMQLQQLLQSGGSGGSGSGSGEFDPFALPAVPEHHRPLPGVLYTDQRVATQLSAAAAAQQASVHSPLLPPRPLMKQESFQADQHKALFREMSLGIQREATEEGGYFLGSPGEPDPLGTDKAAASTPGPDLAALLASPPHGGHRRSFSRQGSGLSRLISKNWENDVMEMMLPDVDSDISAYPMERVVVEVAQRPSSPGSRLFDQAGIAFFGSAHSAATAVQHALEPSPLGLAPGGESPLEFAAGEAHARAQRPRLARVSGAGMPRSGSHPHLAHLAKRPGGAGAEAGSEEERRKERVDAAAVAAAYAAQEHRDEKLAAVRSQRAASSTEAEDTLEMIDVPENLQRLSSFLHRGPASGARLTLGRELAAAEASAVADLELEARSLLKHMSIDEVDAVAAVRDAAKELEVMPTIYAAPSSELEAASGAPSHRDSQSEELGSRGHSATSLLDGLQVATSGVAGQPLDPIAQQLQAAMAQHAARQAR*