Gene Details:

  • Gene ID: Genemark1.2565_g
  • Gene Name: COCSUDRAFT_61775
  • Gene Family: CAMTA Family
  • Description: CAMTA Family protein
  • Species: Coccomyxa subellipsoidea C-169
  • Source: CAMTA family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_005650122.1  — hypothetical protein COCSUDRAFT_61775
  • TrEMBL:  I0Z4K9  — I0Z4K9_COCSC; Uncharacterized protein
  • STRING:  XP_005650122.1  — (Coccomyxa subellipsoidea)

Gene Ontology:

  • GO:0009409  — Biological Process — response to cold
  • GO:0045893  — Biological Process — positive regulation of transcription, DNA-templated
  • GO:0071275  — Biological Process — cellular response to aluminum ion
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding

Family Introduction:

  • The CAMTA family of calmodulin binding transcription factors comprises six members in Arabidopsis (Bouche et al., 2002; Finkler et al., 2007). Each protein includes an IQ domain for calmodulin binding; ankyrin repeats for protein interactions; the TIG domain, which has nonspecific DNA binding activity; and the CG-1 domain, which has specific DNA binding activity. The CG-1 domain recognizes the core consensus sequence, vCGCGb, referred to as the CG-1 element (da Costa e Silva, 1994). This sequence matches the CM2 sequence, CCGCGT, and overlaps the ICEr1 element. Thus, the possibility was raised that one or more of the CAMTA proteins might have a role in regulating CBF2 expression.

Literature:

Sequences:

CDS Sequence:
  • >Genemark1.2565_g|Coccomyxa_subellipsoidea_C-169|CAMTA|Genemark1.2565_g
    ATGCAGCCATTGGAGGGGCCCCTGGCCAGAATGGACAGCGATGCAGATGTGAAGCTGATCATTGCGATGGATAAGGGCGGCTGCGAAGCAAATGTGGTGCTACGGCGGGATGCGCAGCAGGAGGACATCCTGAAGGCATACGTGCAGGGATACATGCTCCTACATTCCAACGCACCGATGGGCCAGCAGCCGCAGCGGCTGCCTCCCGGCACTGCAAAGCTGCCTGCCCAGAGCCTTAGCCCGGACAATCCGAGATTTCCCCAAAAAGTCAGGGACATCCTTCACAAGGCTCAGAGCGCATGGCTTAAGAACACGGAGGTTTGCGATCTACTCCTGCATTACGCGGAGTACAACCTTCCAGTGGCACGCGATCCCCCAAATCTGCCACCAGGGGGCTCGCTATTCCTGTTTGATCGCCGAGCTGTGCGCTTCTTCCGCAAGGATGGGCACAACTGGCGCAAGAAGGCGGACGGCAAGACTGTCAGGGAGACGCATGAGAAGCTCAAGGTCGGAAATGTGGAGATGCTGAACTGCTACTATGCTCATGCAGACACTGAGGAAGGCGCGCAGCAAGCCACGCGCTTGCAGCGGCGGTGCTACTGGCTGCTGGAGTCTGAGGACGACATCGTGCTGGTGCACTACCTGAACATCGACAAGGCCAAGGGCAAGACTGAGGACTCGTGGGCCCCGTCTGACCCAGAGATGGGCCGCCGGCCGGGCTTCACCGTCACATCCGGCGGCGTGCATGGCATGCCGGGGCTGGGCATTCAGGGGCTGGCTGGGCACCCGGCGCACCAGCTGCTGCAACAGCACCACCACCAGCAGCACCCGGTGGACCCCTACATCCCCCTCATGCCCTCCCTGTCCCTGGACTCCTTCTTTGGTGCCTACGACGATCGCGATGCCGCCCAGAGGGCGCAGGCGCCGCCCCCCATGATGGAGAACGTGCTGCCGGCCTGGGAGGACCTCAGCAACGGCCCCTCCAACTCCTTGCAAGCAGCTGCCGACTGGCGGTCGATGCTGCGGGGCGATTCGCTGAGCATGGGGCTGAGCGAGGGGCCGACGGCCGCGCTGGTGGAACATGGCGCCAACATGATGATGATTGAGCAGGGCGCTCAGCAACCAGAGACCTGGGCCCAGGACATCCCCGTCGCCATGCGCACACCCTCGCTAGAAGCCCGCCAGGCGCGGGCAGCGGCGGTGATGCGGCAGAACGCGGAGCTTCAACAGCGGCAGTCCTCCCTGGAGCGCAGGGCCGCCTACCAGAAGTCGCTGCTCGCCGCCAACCGCGACCAAATGCAGGCGCGGCCCCAGTCCCCACTCCTTTTTCGTCAGCATCAGGCGGCAGCTGCCGCAATGCTTCAGCAGGCGCAGCAGGGAGGCCAGGCCAATGGCATGCCCTACAATCTCAACGCCTTCCAACAGAGGCTCTTGGCGGCTGCGCGGCAGGGCCCGCCCGGCGCCGGTGGCGGCCCCATGCATGGTCAGATGCCAGGCATAGGCTTCCGGCCGCAGGAGCCGCAGGCCGCCGCGCAGGCGGCCGCGCTTGCCGGGCTGGCCGGGCAGATGCAGCCCCCGCACTACAACCAACAGATGCCTCCGCCGCCACCGCCGCAGAGGCCCTTCATGGCAGCCAACACATCGGGCGCGTCTGCTGCGCCGGGAGTTGGGATGCCTCAGGCGCGGCTGCCACCGCTGCAGCAGGGCGCGTACCAGGGCGGCCCCGCCGCGGGGCCGGTGCCAGCAGACTGGGCGCGCGCCTACCGAGAGCAGCAGCACAAGGCCGCTCAGGCTGCAATTGCGCGCAGTGCCAAGTGGGGCACGACGGATCCGCCGCTGCGGCCGGTGCCTCTGCGGCAGGGCTCTGCCCCCGGGCCCCTGGACATCAGCCCGAGCGGCTCTGCAGGCCCCTCGCCCGGCAAGCCTCCGCTGGCCGCCACAGAGGGCTTCCCCAAGATGAGCAAGCTGGACGCCCTGCTCATGCAGCAGCAGCAACAGCAGCAGCAGCACAGCGGCTCATCCAGCGGTGAAGGGAAGCAGACGATGTCGTCCCCAGGAGCTCTCGGCGCCCATGCCAGCGCCAGCGGCGACCAGATCCTGCACCATGCCAGCTCAGCCGGCCAGCTCGGCGCCATCGGGACACAGGTGAAGATGGATGAGACAGCGAGCGAGGGGACCGTGACGGGAACGCCCCTGGGCCGCGCGGAGAGGCCGGCGTCCAAGGTGGCAAAGGCGCTGGCGCTGGAGGCGCAGCTGCGCAGCGTGGACGGCGCAGTCATGGAGCAGCTGCAGACCGCGCGCGCCGAGTCCGGCTGCTCTGCCTCCCTCGACAGCAAGGTACAGAAATTGGAGGAGGATTTGGATCACCTGGAAGCCAGCTCTCGTCAGCTGCTGCAGGACAGCGTGCAGGGGCCGGGAATGGAAGCGGCAGGCGTTGCTATGCAGGAACCTGCCACATCAGGCACGCACACTTCATCGCTTAGCCATGCCCCCAGCGCCAGCCTGGAGCTGCTGGACTTCTCACCCGAGTGGGACTTCACTCTGGGCGGCACAAAGGTCATCGTCACCTGCCGAGAGGTGGACGGCGACATCACATCAAACTGCCCCGTCTGCGTCATGTTTGACAAGGAGCAGGTGCCGGCGGCGCGGCTGCAGGCGGGAGTGTACCGCTGCCACGCGCCACCGCACGAGGCCGGCACGGTCGGCCTGTGCGTCACCTACGGGGACGGCCGCCCGCGCAGCAACGTGCAGCCCTTCACCTACCGCGGCACACCCCTCACTGCCCGCGCCCAGGATGACCTGGCACGGGCGGCGATCCCGGACAGGGACCTGCAGCTTCGGCTGATCCACATGCTGATGAGCAGCAGCAAGGGCGCCACCTCCAGCAGCACGGTGTCCCCAGCCTCGCCCTCCAACTCCTCCGACTCCAACACCCACAAGCAGCACGCCAGCCCGTCCCGCACAGCCGCCCCCACGGCAGGCTCTGCCACCGTAGAAGTGGCACTGGAGGACAATCCTAATGCGCTGCAATATCTGTCGGATGATCTGCGGGAGAAGCTGCTGCAGACGCTGCTGGAGCGCCGCCTAAAGCAGTTCACCTCAGACGTGAGGGAGGGCAAGGCACAGCAGGGCTCCGGGTGGTCGCCCAGTTTCGCGGTGAACCGGCGGGCGCAGTCGGGGCTGGCTCTCGTCCACATCCTGGCAGCGCTCGGCTACGACTGGGGCCTGCAGCTGCTGATTCCCCTGGGCGCGCTGCTTGACCTGCAGGACGCGTGGGGCCGCACAGCGCTGCACTGGGCTGCGACATACGCGTGCGAGGCCACAGTGGTACTCCTGTTGGTGCGTTGCGCGCACCCGGCCCCTCTGTCGCACGGCGGAGAGGCGCAGCCGCGCGCGACGCCCGCCGACATGGCTGCCGGCAACGGCCACGCCGGTATCGCGGCGTTCCTGTCTGAGCAGGCCCTGCTGCGCCTCGCCAAGGACAACAACGTGTCCCTGGACGAACCTGCCGACTCTCGCACGGGAGACCAGAGCATGTCTGCGCTGCGCAAGAGGGCGCGCAGCCTGCGGCGGGCCGACTCCGCCTCGGAGCTGCCGCTGCTGCGGGAAGCCATGGCCGCGCCCGATGGGGCCTCCAAATTCCCAGAGGAAGAAGGCGACGAGGGAACGAGCCCCAAGGAGGTGCTTGCGCGCGTCAAGAAGCTGGCCGAGCGCGTGCGGCAGGCGCTCACCCGCGCAGCCTGTCGCCGGGCAGCCATGGAGCAGCAGAGCCTCCGCCGCCATAAGAAGGAGGGGGACGCAGTGGCGCGCATAGAGAGCAGTCTGCAGGCGTGGCAGGCGGTGCAGCAGGCGGTGCAACGCGGCATTGCGCAGAGCGACTCGGACGCGGCCGCCCGCCGCCTCGTGCGCCTCGGCGAGCGCATCTCCTGCATCAACGCCTGCCTCAGGGACGCCATCAAACGCAGCTTGGGCTGCGGCGGAGCCTCTTCGGCGTTGGCGCCTGTTGACGAGGCTGCGGCGCTGCCGATCACTGGAAATTCCATGGTGTTGGATTACGGGTCAGACTCGGACGCGCATGCGATGGCGGGCGACTCGCTCCTCCGACGGCGTTCCCTGATCCGCCTCCGCGAGTCGCGCCGCCGCGACAGCATCACCAAAATCAAGGGGTTTGAGAGCGACACAAGCATCCGGCAGTTTCTAGCGCGCGGGCGTGAGGGCAGCAAGGCGGACGAGGGCGGCCCCAGCCAGCTGGACATCCGTGACCTGCGTTCCCTCTCCCTCTCATTCCCCTCCTTCTCCGTGGTGGGGCCCCCCATCGGCGTCTCCCTGCCGGACTGCGACCTCCGCGAGCTGCGCAACTTCATCGCCGGTGCCTCTGCCAAGGTCCATCGGTCGGCGTTCGGCACCTTGGCATCTGCGAGCAATGCGAAAGCTGCCGCTGCGCCCGCGCGCGCTGGGGCGGCGCCAGAAGCCTCCGCTGAGATGGCCCTCGTACAGAAAGCTGTGGCGCACATAGAGGCTCTGCAAGAGGAGGGGCCAGGGCATGCTCAGTACTTGCGCCTCTGCCAGGCATACACCCAACTGACCACCACTCAGCCCTGGGGCACCTTCAAGCAGGCCCGCCGTGGCAGCCTCAGCAACGCCGTCTGA
Protein Sequence:
  • >Genemark1.2565_g|Coccomyxa_subellipsoidea_C-169|CAMTA|Genemark1.2565_g
    MQPLEGPLARMDSDADVKLIIAMDKGGCEANVVLRRDAQQEDILKAYVQGYMLLHSNAPMGQQPQRLPPGTAKLPAQSLSPDNPRFPQKVRDILHKAQSAWLKNTEVCDLLLHYAEYNLPVARDPPNLPPGGSLFLFDRRAVRFFRKDGHNWRKKADGKTVRETHEKLKVGNVEMLNCYYAHADTEEGAQQATRLQRRCYWLLESEDDIVLVHYLNIDKAKGKTEDSWAPSDPEMGRRPGFTVTSGGVHGMPGLGIQGLAGHPAHQLLQQHHHQQHPVDPYIPLMPSLSLDSFFGAYDDRDAAQRAQAPPPMMENVLPAWEDLSNGPSNSLQAAADWRSMLRGDSLSMGLSEGPTAALVEHGANMMMIEQGAQQPETWAQDIPVAMRTPSLEARQARAAAVMRQNAELQQRQSSLERRAAYQKSLLAANRDQMQARPQSPLLFRQHQAAAAAMLQQAQQGGQANGMPYNLNAFQQRLLAAARQGPPGAGGGPMHGQMPGIGFRPQEPQAAAQAAALAGLAGQMQPPHYNQQMPPPPPPQRPFMAANTSGASAAPGVGMPQARLPPLQQGAYQGGPAAGPVPADWARAYREQQHKAAQAAIARSAKWGTTDPPLRPVPLRQGSAPGPLDISPSGSAGPSPGKPPLAATEGFPKMSKLDALLMQQQQQQQQHSGSSSGEGKQTMSSPGALGAHASASGDQILHHASSAGQLGAIGTQVKMDETASEGTVTGTPLGRAERPASKVAKALALEAQLRSVDGAVMEQLQTARAESGCSASLDSKVQKLEEDLDHLEASSRQLLQDSVQGPGMEAAGVAMQEPATSGTHTSSLSHAPSASLELLDFSPEWDFTLGGTKVIVTCREVDGDITSNCPVCVMFDKEQVPAARLQAGVYRCHAPPHEAGTVGLCVTYGDGRPRSNVQPFTYRGTPLTARAQDDLARAAIPDRDLQLRLIHMLMSSSKGATSSSTVSPASPSNSSDSNTHKQHASPSRTAAPTAGSATVEVALEDNPNALQYLSDDLREKLLQTLLERRLKQFTSDVREGKAQQGSGWSPSFAVNRRAQSGLALVHILAALGYDWGLQLLIPLGALLDLQDAWGRTALHWAATYACEATVVLLLVRCAHPAPLSHGGEAQPRATPADMAAGNGHAGIAAFLSEQALLRLAKDNNVSLDEPADSRTGDQSMSALRKRARSLRRADSASELPLLREAMAAPDGASKFPEEEGDEGTSPKEVLARVKKLAERVRQALTRAACRRAAMEQQSLRRHKKEGDAVARIESSLQAWQAVQQAVQRGIAQSDSDAAARRLVRLGERISCINACLRDAIKRSLGCGGASSALAPVDEAAALPITGNSMVLDYGSDSDAHAMAGDSLLRRRSLIRLRESRRRDSITKIKGFESDTSIRQFLARGREGSKADEGGPSQLDIRDLRSLSLSFPSFSVVGPPIGVSLPDCDLRELRNFIAGASAKVHRSAFGTLASASNAKAAAAPARAGAAPEASAEMALVQKAVAHIEALQEEGPGHAQYLRLCQAYTQLTTTQPWGTFKQARRGSLSNAV*