Gene Details:

  • Gene ID: AHYPO_017426-RA
  • Gene Family: CAMTA Family
  • Description: CAMTA Family protein
  • Species: Amaranthus hypochondriacus
  • Source: CAMTA family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_010690491.1  — PREDICTED: calmodulin-binding transcription activator 2 isoform X1
  • Refseq:  XP_010690492.1  — PREDICTED: calmodulin-binding transcription activator 2 isoform X2
  • Swissprot:  Q6NPP4  — CMTA2_ARATH; Calmodulin-binding transcription activator 2
  • TrEMBL:  A0A0K9QYQ2  — A0A0K9QYQ2_SPIOL; Uncharacterized protein
  • STRING:  XP_010690491.1  — (Beta vulgaris)

Gene Ontology:

  • GO:0009409  — Biological Process — response to cold
  • GO:0045893  — Biological Process — positive regulation of transcription, DNA-templated
  • GO:0071275  — Biological Process — cellular response to aluminum ion
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0005515  — Molecular Function — protein binding

Family Introduction:

  • The CAMTA family of calmodulin binding transcription factors comprises six members in Arabidopsis (Bouche et al., 2002; Finkler et al., 2007). Each protein includes an IQ domain for calmodulin binding; ankyrin repeats for protein interactions; the TIG domain, which has nonspecific DNA binding activity; and the CG-1 domain, which has specific DNA binding activity. The CG-1 domain recognizes the core consensus sequence, vCGCGb, referred to as the CG-1 element (da Costa e Silva, 1994). This sequence matches the CM2 sequence, CCGCGT, and overlaps the ICEr1 element. Thus, the possibility was raised that one or more of the CAMTA proteins might have a role in regulating CBF2 expression.

Literature:

Sequences:

CDS Sequence:
  • >AHYPO_017426-RA|Amaranthus_hypochondriacus|CAMTA|AHYPO_017426-RA
    ATGGCGAATGGCGGATTTATCAATCCCGGAATTCGTCTAGATATTCAGCAACTACAATTAGATGCTCGACATCGATGGCTGCGAGCAGCTGAAATTTGTGAAATTTTAAGGAATCACCAAAAATTTCAAATTTCTTCGGAACCTCCAAATCAGCCTTCAAGTGGGTCACTCTTTCTTTTTGACCGTAAGGTTTTGAGATATTTTAGGAAGGATGGACATAATTGGCGAAAGAAAAAAGATGGAAAGACCATCAAGGAAGCTCACGAGAAGCTGAAGGTCGATAGTGTTGATATGTTGCACTGCTACTATGCTCATGGTGACGATAATGAATGCTTTCAGAGGCGTAGCTATTGGTTGCTAGAAGAGGAATTCATGCATATAGTTTTTGTGCATTACTTGGAGGTGAAGGGTAACAGGAACAGTTCCAGGGAGACTGAACCTGTAATTTCCACTTCCCAGATTAGCAACTCTATGTCTAGCAGTGTTTCTAACAGTTACAATGATGCTTTTACCGGGAATGCTGGATCACCAAGTGCAGCTAGCAGTTTGAATTCTTATGATGAAATTGAATCTGAAGATAATCACCAGGCAATTTCAAGGTACCCTTCTCCTAGTTTCTCGCATGTAGAAGCAAGATTTGAAAATAATAAGATGGGTGCTATCATAAACTCTACCTTTCTGCCTTCATACCAGGAAGAGTATAAAGGGCCTCAACCGTTGGATTATGTTTCACTTGTTCAACAAGGAGTTGGAACTAAGGATGATAATCAATTTAAAACACTTGACTTGGCTTCATGGGAAGAAGTCTTTCAACAGAGTACTAGAAGCTCAGAAAATTTACAGGCAAATCCATTGGTGTCTGCGGCTCCTCTTGTTGGAAGCACTGATGTTTTTAATGAGAACTTCAGCCTGTTTTTGGATGCTGGCTTTGGTGTCGATTCTATGGAAGGAGGTTCTTTAGCTTCATACTTGCCGAACTACAATCCATTAAGCACAGAATTTCCGGACAATACGAATGTCTCTGTTATTGCAAAGCATCCATTGCTAGGAAACATTCTAATGGGGGAGGGCTTGCAAAAAGTTGACAGCTTTTCCAAATGGATGTCCAAGGAATTTTCTGGTGTAGATGACTTGTATTTGAACTCATCTCTTGATTATTCATGGCAGAATATTGAAACATCTACTTCTGTTGATGATCCTTCAATACAACATGAGAACTACACAGTAAGCCCCTCGATCGGATATGATCAGCTCTTCGACATTCAAGATTTCTCACCTAGTTGTTCTTCCAATGACACTGAAACAAAGGTTGTGATCACTGGAAAATTTTTGGTGGATCCCGCAGAGGTGTTCAAGTATAACTGGTCATGCATGTTTGGGGAAGTTGAGGTTCCTGCTGAAGTGCTGGGTAATGGTATTCTCTGTTGCTATGCGCCATTGCACACTGCTGGACGAGTCCCTTTCTATGTAACCTGTTCTAACAGGTTTGCTTGTAGTCAAGTGCGGGAATTTGAATATCTTCTAGACAGTCAAAGGGCCATCAACAGAAGTGTTTCGGGAGATAGTATAATGGAGCAACAGCTTTGGCACCGACTTCAAAAGCTACTCTCTCTGAAAAATCCTGCAAATTTGGATCCTGTAACAAAGAGTTTTAGAAAGAATGAACCAATATTTAGTAAAATTCTTCTATTGATGGAAGATGAGCTTTGTTTGGGGGTTGAACAACAGTTGAAAGAGAAAGTAGTCTCTTGGCTTTTTGATAAGGTAAGTGAAGATGGAAAAGGACCAAATGTACTTGATGAACTGGGGCAAGGGTTGCTACATCTAGCAGCCGCGCTTGGTTTGGATTGGATTATCCCTCCTACTGTCGCTACAGGTGTTAGTGTAAATTTCAGGGACGTATGTGGATGGACCGCACTTCATTGGGCTGCATTTTATGGAAGAGAGACGACTGTCGCTCTTCTAGTTGCACTGGAAGCTGCATCAGGAGCAGTAACAGACCCTTCTCCAGAATTTCCTTTGGGTAGAACTGCTGCAGACTTGGCTTCAGCTAATGGATTCAAAGGGATATCTGGTTTCCTTGCAGAGCATTCTTTGACTGCTCACCTTGAGACTCTTACAATGGCTGACCGAAAGTTAGATACTCCGTTGGATGATTCTATGAACAAAGCTGTTCATACAATGAGAGAGAACGTGGCAACTCCAGGTATTGAAGGTGATGGATCAGATTTGCCATTAAAGGACTCCTTAGCTGCAGTTCGCAATGCTACTCAAGCTGCTGGCCGTATCCACCAAGTTTTCAGGATGCAGTCTTTCCAAAGGAAGCATGTCAGTAAAGGTGCTGGACCTTTTGGTAATTATGAGTCTTTGCTCAGTGATGAACAACTTCTTTTACTTGTTTCATCCAAGATTCAGAGGCCTGGACACCCTGATGAGCAAACCCATTCTGCTGCAATACGTATCCAAAAAAAATATCGTGGATATAAGAAGAGGAAAGAATTTCTGATTATTCGCGAACGTGTTGTTAGAATCCAGGCCCATGTAAGAGGTCACCAGGTTAGAAAACGTTACAAAACGGTTGTGTGGTCCGTGGGAATACTGGAGAAAGTTATTCTGCGGTGGAGACGGAGAGGGACAGGATTAAGAGGTTTTCGTCCTGATGCCCTCTATAAAGCATCCAGCACACTGGGGACACAAGATGTACAGAAGATTTCTTCTGAAGATGATGATTATGATTTCCTGAAGGATGGAAGGAAACAAACGGAAGAGCGTCTACAAAAAGCACTTGTTCGGGTGAAGTCCATGGTTCAGTATCCTGATGGAAGAGCACAGTATCGAAGGATTCTGACTGCTGTAGAAGGTTTTCAGAAGAATCAGGTGCATGAAAACACCCGAAAAAATTCAGAAGATGTTCCAGTTGAAGGTGAAGAAGACAAAATTTATGTCGAAAGCTTACTGGATGTTACATTTGAATAA
Protein Sequence:
  • >AHYPO_017426-RA|Amaranthus_hypochondriacus|CAMTA|AHYPO_017426-RA
    MANGGFINPGIRLDIQQLQLDARHRWLRAAEICEILRNHQKFQISSEPPNQPSSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVDSVDMLHCYYAHGDDNECFQRRSYWLLEEEFMHIVFVHYLEVKGNRNSSRETEPVISTSQISNSMSSSVSNSYNDAFTGNAGSPSAASSLNSYDEIESEDNHQAISRYPSPSFSHVEARFENNKMGAIINSTFLPSYQEEYKGPQPLDYVSLVQQGVGTKDDNQFKTLDLASWEEVFQQSTRSSENLQANPLVSAAPLVGSTDVFNENFSLFLDAGFGVDSMEGGSLASYLPNYNPLSTEFPDNTNVSVIAKHPLLGNILMGEGLQKVDSFSKWMSKEFSGVDDLYLNSSLDYSWQNIETSTSVDDPSIQHENYTVSPSIGYDQLFDIQDFSPSCSSNDTETKVVITGKFLVDPAEVFKYNWSCMFGEVEVPAEVLGNGILCCYAPLHTAGRVPFYVTCSNRFACSQVREFEYLLDSQRAINRSVSGDSIMEQQLWHRLQKLLSLKNPANLDPVTKSFRKNEPIFSKILLLMEDELCLGVEQQLKEKVVSWLFDKVSEDGKGPNVLDELGQGLLHLAAALGLDWIIPPTVATGVSVNFRDVCGWTALHWAAFYGRETTVALLVALEAASGAVTDPSPEFPLGRTAADLASANGFKGISGFLAEHSLTAHLETLTMADRKLDTPLDDSMNKAVHTMRENVATPGIEGDGSDLPLKDSLAAVRNATQAAGRIHQVFRMQSFQRKHVSKGAGPFGNYESLLSDEQLLLLVSSKIQRPGHPDEQTHSAAIRIQKKYRGYKKRKEFLIIRERVVRIQAHVRGHQVRKRYKTVVWSVGILEKVILRWRRRGTGLRGFRPDALYKASSTLGTQDVQKISSEDDDYDFLKDGRKQTEERLQKALVRVKSMVQYPDGRAQYRRILTAVEGFQKNQVHENTRKNSEDVPVEGEEDKIYVESLLDVTFE*