Information report for AHYPO_004790-RA
Gene Details
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Functional Annotation
- Refseq: XP_021723085.1 — calmodulin-binding transcription activator 4-like isoform X1
- Refseq: XP_021745199.1 — calmodulin-binding transcription activator 4-like isoform X1
- Swissprot: Q9FYG2 — CMTA4_ARATH; Calmodulin-binding transcription activator 4
- TrEMBL: A0A0K9QIH3 — A0A0K9QIH3_SPIOL; Uncharacterized protein
- STRING: XP_010682739.1 — (Beta vulgaris)
- GO:0005634 — Cellular Component — nucleus
- GO:0005829 — Cellular Component — cytosol
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- The CAMTA family of calmodulin binding transcription factors comprises six members in Arabidopsis (Bouche et al., 2002; Finkler et al., 2007). Each protein includes an IQ domain for calmodulin binding; ankyrin repeats for protein interactions; the TIG domain, which has nonspecific DNA binding activity; and the CG-1 domain, which has specific DNA binding activity. The CG-1 domain recognizes the core consensus sequence, vCGCGb, referred to as the CG-1 element (da Costa e Silva, 1994). This sequence matches the CM2 sequence, CCGCGT, and overlaps the ICEr1 element. Thus, the possibility was raised that one or more of the CAMTA proteins might have a role in regulating CBF2 expression.
Literature and News
Gene Resources
- Pfam: PF02458
- Gene3D: G3DSA:3.30.559.10
- PROSITE profile: PS51437
- SMART: SM01076
- Pfam: PF03859
- Gene3D: G3DSA:2.60.40.10
- Pfam: PF01833
- SuperFamily: SSF81296
- Gene3D: G3DSA:1.25.40.20
- PROSITE profile: PS50297
- SuperFamily: SSF48403
- Pfam: PF12796
- SMART: SM00248
- PROSITE profile: PS50088
- SuperFamily: SSF52540
- SMART: SM00015
- PROSITE profile: PS50096
- Pfam: PF00612
- InterPro: IPR003480 IPR023213 IPR005559 IPR013783 IPR002909 IPR014756 IPR020683 IPR002110 IPR027417 IPR000048
Homologs
- Beta vulgaris: Bv6_150570_hsih.t1
- Cajanus cajan: C.cajan_24264
- Cicer arietinum: XP_004504405.1, XP_004504404.1, XP_012572322.1, XP_012572321.1
- Glycine max: Glyma.05G148300.2.p, Glyma.05G148300.3.p, Glyma.08G105200.1.p, Glyma.05G148300.1.p
- Gossypium arboreum: Cotton_A_30458_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D05G2988
- Medicago truncatula: Medtr8g080800.1
- Prunus mume: XP_008222186.1
- Prunus persica: Prupe.1G224000.2.p, Prupe.1G224000.3.p, Prupe.1G224000.1.p
- Sesamum indicum: XP_011086818.1
- Vitis vinifera: GSVIVT01010510001
Sequences
CDS Sequence:
- >AHYPO_004790-RA|Amaranthus_hypochondriacus|CAMTA|AHYPO_004790-RA
ATGCAGTCTGAATTTGATATGAATGAACTGCTACAAGCAGCTCATACACGTTGGCTGAAGCCCGCAGAAGTGTTCTTCATTTTACAAAATCACGCAAACTACAAAATAACTCAGGAGGCTCCTCAAAAGCCACCTAGTGGTTCATTATATCTTTTCAACAAGAGGGTTCTTAGGTTTTTCCGCAAAGATGGGCATAGTTGGAGGAAAAAAAAGGATGGCAGAAGTGTTGGGGAAGCTCATGAACGTCTCAAGGGGAGACTTAGTTCTGGACCCACTTTAGAATTTCGACCAGGAGCATCTTCAACAATCAGTCAAAGCCCCACTGCATACACTATACAAAACCTAGGATCATCTAGTTTGGCCATTAATGAATCATACCAGAGTCATTCGAGTCCTGTTTCTGTAGAAGTCAGCTCTGATGCAACTATGGAGAAAAGGATTGAGTGCTTAAATGGGTCAAATCTAACTGGAAGTTCGAGTATGATGTCTGTTGATCAGGCACTTCGGAGACTAGAAGTACAACTCAGCTTAGATGATGATGACAGTCTACAAAAGTATGCTCCAGTTGATGATCAAGATGGTAATGAAGACATATTGACTCTGAATGATCTGTGTGACAGTAGTTATTTTGGAGTGTCAACTATTCCAAATGGTCTTTCACAACAACAGGACTCAGGTGGCATTGAAGTGCATCACCATTCTACTTCTGGCATGGCACGAAGTATTGATGATGGCGAATCTTTGTTGTGGATTGATCTCCTGTACAGTGGTCCCCTGAATCAGAATGTAGAAAAGGAAAAAAGAGACGCTCTGAATGGTAAAGATCTATTTTTCTCTGAGAGGCCTGTTGAACATCAACCTCAACATTCTGGAGCCCTCGCTACTGGAAAATGGACTGCTGCACACAAGGATATCAATAACCTCACTTACTCCTCTCCAACATATTCTGCCACCCCTAAGATGTCCACTATGTTTCTTGATCCAAGTCTTGGAATGCCTCTTAGCACAGGTTCAAGCTGGACAGTTACAAAGGAGCAGAAATTTTCCATTCACGAAGTATGTCCAGAATGGGGATATACTAATGATTCAACAAAGGTCATTATCATTGGATCTTTTCTTTGCGATCCCTCAGAGTCTGAGTGGCATTGCATGTTTGGTGATGTTGAAGTTCCACTGAAATTTATCCAAAATGGTGTCTTCAGTTGTCGGGCTCCTCCACACGTTTCAGGAAAGGTTGCCCTTTGCATCACGTCTGGGAACCGAAAGCCCTGCAGTGAAAGTAGAGAATTTGAATACCGTGATAAGGACATTACAGGGGTAAATCACAATAAACAAGGAGAAACAAACAGAAGTACAGAAGAGATGTTGTTGCTCGTCAAATTGGTGCAGATGCTTCTGTCTAATTCATCTTTACGACGAGGAGAAAACAATAGTGTGGGGGCTGACATTCAGAAGTGTAATGATGATATGTGGAACAAAATCATTGAAGATCTGTTAGTTGATGGAACTTCTTTAATGGATACCCTTAATTGGCTATTACAGCAACTTCTGAAAGACAAGCTGCTACAATGGCTTTCCTCAGCATCCATGGAAAGAGGACGATGTGGAGAATGCTCTTTGTCACGAAAAGAACAAGGAATAATTCACTTGATTGCTGGTTTAGGCTATGAGTGGGCTTTAATTCCAATTTTGGATTGTGGGGTTGGCATTAATTTCCGTGATATAAATGGCTGGACTGCCCTGCACTGGGCTGGAAAATTTGGAAGGGAAAAGATGGTTGCTGCTCTTATAGCTTCGGGAGCATCAGCCGTGGCATTGACTGATCCCAGTTCACTTGATCCCACCGGTAGAAGTGCAGCATACATCGCTGCTGAAAATGGGCACAAGGGACTTGCAGGTTATTTGTCGGAATTGGCTCTAACTAGCCATCTCTCATCCCTCACACTGGAACAAAGTGAAAATTCCAAAGATGCTGCTAATGTTGGGGCTGAATCAACTGTTAATAACATATCAAAAGAGGAGGTCAATTCATGTGAGGATAAAGTTACACTGAAACAAATCTTGACTGCAGTTAGAAATGCAGCTCAAGCTGCTGCTCGCATTCAAGCTGCATTTCGTGCACATTCCTTCAGAAAGAGGCAACTTAAAGAAGCTGCTTGTTCAAGGGCTGTTTCTGACCTAGATGAGTATGGTTTCACTGTAAATGATATTCCAGTACTTTCAGCTGCATCAAAGTTGGCGTTTCACAATTCGCATGATTGTCAAAAAGCTGCATTGTCTATTCAGAAAAACTTTCGGGGTTGGAAAGGCCGGAAGGACTTCCTAACATTGCGACAGAAAGTAGTAAAGATACAGGCTCATGTTCGAGGTTATCAGGCTCGAAAGCAATTTAAAGTTATATGTTGGGCAGTTGGTATTCTAGACAAGGCTGTACTGCGTTGGCGTCGTAAAGGAGCTGGTTTACGTGGATTTAGATCGGAATTCTGTGATGAAGAAGAAGATGATGATATTATCAAGGTCTTTAGAAAAGAGAAAGTCGATGTTGCTATTGACGAGGCTGTCAAAAGAGTGCTATCTATGGCTGAATCTCCAGAAGCCCGCCAGCAATATCAACGAATGCTTGCAAGAACGCAAGAAGCTAAGGCTGAGCTGCAAGGCATCACAAGTTCAGGGACTTCAGGCTTCCAAGATACTGTTCATTACATGGATAAAGATGACATCCATACCTCTTCCAGGAAGTCTTGA
Protein Sequence:
- >AHYPO_004790-RA|Amaranthus_hypochondriacus|CAMTA|AHYPO_004790-RA
MQSEFDMNELLQAAHTRWLKPAEVFFILQNHANYKITQEAPQKPPSGSLYLFNKRVLRFFRKDGHSWRKKKDGRSVGEAHERLKGRLSSGPTLEFRPGASSTISQSPTAYTIQNLGSSSLAINESYQSHSSPVSVEVSSDATMEKRIECLNGSNLTGSSSMMSVDQALRRLEVQLSLDDDDSLQKYAPVDDQDGNEDILTLNDLCDSSYFGVSTIPNGLSQQQDSGGIEVHHHSTSGMARSIDDGESLLWIDLLYSGPLNQNVEKEKRDALNGKDLFFSERPVEHQPQHSGALATGKWTAAHKDINNLTYSSPTYSATPKMSTMFLDPSLGMPLSTGSSWTVTKEQKFSIHEVCPEWGYTNDSTKVIIIGSFLCDPSESEWHCMFGDVEVPLKFIQNGVFSCRAPPHVSGKVALCITSGNRKPCSESREFEYRDKDITGVNHNKQGETNRSTEEMLLLVKLVQMLLSNSSLRRGENNSVGADIQKCNDDMWNKIIEDLLVDGTSLMDTLNWLLQQLLKDKLLQWLSSASMERGRCGECSLSRKEQGIIHLIAGLGYEWALIPILDCGVGINFRDINGWTALHWAGKFGREKMVAALIASGASAVALTDPSSLDPTGRSAAYIAAENGHKGLAGYLSELALTSHLSSLTLEQSENSKDAANVGAESTVNNISKEEVNSCEDKVTLKQILTAVRNAAQAAARIQAAFRAHSFRKRQLKEAACSRAVSDLDEYGFTVNDIPVLSAASKLAFHNSHDCQKAALSIQKNFRGWKGRKDFLTLRQKVVKIQAHVRGYQARKQFKVICWAVGILDKAVLRWRRKGAGLRGFRSEFCDEEEDDDIIKVFRKEKVDVAIDEAVKRVLSMAESPEARQQYQRMLARTQEAKAELQGITSSGTSGFQDTVHYMDKDDIHTSSRKS*