Information report for 100424
Gene Details
Functional Annotation
- Refseq: XP_002502437.1 — Endoribonuclease/protein kinase
- TrEMBL: C1E5U8 — C1E5U8_MICCC; Endoribonuclease/protein kinase
- STRING: XP_002502437.1 — (Micromonas sp. RCC299)
- GO:0006397 — Biological Process — mRNA processing
- GO:0006987 — Biological Process — activation of signaling protein activity involved in unfolded protein response
- GO:0008380 — Biological Process — RNA splicing
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009816 — Biological Process — defense response to bacterium, incompatible interaction
- GO:0046777 — Biological Process — protein autophosphorylation
- GO:0090501 — Biological Process — RNA phosphodiester bond hydrolysis
- GO:0042406 — Cellular Component — extrinsic component of endoplasmic reticulum membrane
- GO:0004521 — Molecular Function — endoribonuclease activity
- GO:0004672 — Molecular Function — protein kinase activity
- GO:0005524 — Molecular Function — ATP binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- One gene isolated by virtual subtraction is PEI. It encodes a protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage. Transgenic Arabidopsis plants expressing a PEI1 antisense gene produced white seeds in which embryo development did not progress through heart stage. Aberrant embryos failed to form cotyledons, but the embryonic root appeared to be normal. Aberrant embryos did not turn green, and the expression of genes involved in photomorphogenesis was drastically attenuated. In culture, aberrant embryos did not form true leaves, but root formation was apparently normal. These results suggest that PEI1 is an embryo-specific transcription factor that plays an important role during Arabidopsis embryogenesis, functioning primarily in the apical domain of the embryo.
- we used a random binding site selection method to show that recombinant PEI1 protein purified from Escherichia coli can bind to specific DNA sequences. This DNA binding activity supports the prediction that PEI1 is an embryo-specific transcription factor.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: arahy.Tifrunner.gnm1.ann1.9UP1GZ, arahy.Tifrunner.gnm1.ann1.770S43
- Citrullus lanatus: Cla97C01G020490
- Cucumis sativus: Csa_6G486760
- Glycine max: GLYMA_01G157800
- Lupinus albus: Lalb_Chr05g0229591
- Nicotiana attenuata: A4A49_28095
- Solanum tuberosum: Soltu.DM.04G037840
- Vitis vinifera: VIT_207s0031g02180
Sequences
CDS Sequence:
- >100424|Micromonas_sp._RCC299|C3H|100424
ATGAAAATACAGTGCAACGTGTGTGAGGCTGCGGAGGCGAAGGTGCTCTGTTGCGCAGACGAGGCAGCATTGTGTTGGGCTTGCGACGAGAAAGTACACGCCGCCAACAAGCTCGCCAGCAAACACCAGAGGGTTCCCCTTTCCAATTCTTCCCCACAATTGCCCAAATGCGACATTTGCCAGGAGATGGCAGGCCTTTTCTTTTGCCTAGAAGATAGAGCTTTGCTCTGCAGGAAATGTGATGTAGCCATTCACACGGCAAATGAACATGTGTCTGTTCATCAAAGATTTTTGCTTACAGGAGTAAAGGTAGGCCTTGAGCCTACTGATCCTGTTGGCTCCTCTTCCTCTGCCAAGTCGCTCTCTGGTGAAAAGATGTCAGGGACGAAGACTGACTTTGTTTCAGGAAGAGTCTCCTCGATGCCTTTTGCGAGTTCGTCAAATTATGCTCCATCTGTAGATGGAATGAGGAGCTCTGAACCTCTGAAGGTGCCATTTGCAGAGGGTAACAATGCTGGAGCCATCCAACAGTGGCAACTAGATGATTTGTTCAGTCTAACTGGGTTCAACCAGAATTACAGCTACGTGGGTAATGGTTCATCAAAGGCTGACAGTGGGAAGCGCAGCGAGTCTGAAAACTCAGCGATGATGAGATCCGGGGAGGACGAAATGGATTATGGGGAGTGCTTGGGTCAGGCTTCAGAGAGCTGTTGGGCAGTGCCAGAGATGCCATCACCACCTACTGCATCGGGGCTTTGTTGGCTGAAAAGCTCAAGGGAACACTGTGATGTTGAGGATTTTGTGCCTGATATAAGATGTTCAGGAGCTAAGACTGACCACGATGACGCGAAAGAACACACGAGAGTCCCTAAAAGACCAAGGCAACAACATTGGACTCTCTATTGA ATGGCGGATGGAAACCCACATTTCTTTCGCCCACTCCTTCCTGGATTTGAGCACCGACTTGCAATTCCAGTGGCATTCTCTAAGTACTTGGATGACGGGGAAGCTGCTGTGCTGAGAAGCTCCAGTGGGAAATGTTATCCAGTGAACATCAGCTGCAGAGATTTCAAAGATGAAGGATGGAAAGAGTTTGTTGCCGATCACAGCTTGCATGTCGGCGATTTCCTGGTCTTCAGATATACTAATACTCACAAGGTGTTCGACGTAATGGCGTTCGATCCAAGTGCCTGTGAATTTCAGTACCCTCCTTCATTTTCCTCTCCCGCGTTTCATGCTTCTGTCGGAACAGAGCATACTAATGAAGAAGCACTTGAAAATGGAAGAGATCATCCTAGACCAACATACGGGAAGGACCAAGTGAAGGAGAAAGGTGGTTTTTACGTGCTGAAAAGCCCTTCCTTTGTGGTAACTATAAGGAGCGGTAACCTAGAAAAGAAGAACCTGCATATCCCTAAAGCCTTCGCGAGGAATAATGATCTGGAATGGATAGGCCCTCGAAGTGTGATTCTTTTGAATGAAGAAGGAAAGTCATGGCAAGCAGACTTAATTGGTTACAAGAAGATTAGCCACTCTAAGCTTGGTAGGCAAGCAGTTCTTAACAGAGGAATCAACCGATTCCTGGAGGAAAACAGGCTGAAGCTGGGAGATACTTTCAGTTTGGGACTTGTTCAAGGTGGCAAAAACCCTGTATTCAAAATGTCTGGTGTAACATGCGCCATGACCCTCAGAAATTATAGAGGAAGTTGCTACTCGGCGATATTAAAGTCCATTAAGGACCGTGCAGCCTGCATTGGAAGTGGCTGGAAGGAAGTAGTAAAGGAAAATGGTATACAGGAGGGGGATATCTTGATGTTCGAACTCGTTGAAACTGGAACCAAACCAGTCATGACATTTAAGGTAGTTTTGCAGGAAGAAATCAGGGTCAAAGAAGAGGAGGGATGTGTGATGTCTACTTGTTAG ATGTCTGTGAGCAAGATAAGGATGGTGGAGGCGAAGTTGGCTCCAGGGTTCAGATTTCATCCGAGAGATGAAGAGCTTGTCTGTGACTACCTCTTCAACAAGATCACCTTCTCCCGCTCTCTCTTCTTCATCGAAGTTGATCTCAACAGCTGCGAACCTTGGGATCTTCCTGAAACAACAAGGGTGGGAGGAAAAGAGTGGTACTTCTACAGCCGGAGGGATCGAAAGTATGCAACGGGGCTCCGAACCAACAGAGCCACCGCGTCGGGGTATTGGAAGGCTACCGGAAAGGATCGGGCGGTTATACGAAACGAAGTATCAATCAACAAACAAAGGCAACAACAACTAGTCGGGATGCGAAAGACCTTGGTGTTTTACCAAGGCCGAGCCCCTAAAGGCCACAAAACCGATTGGGTTATGCACGAATTCCGACTCGAAGGCCCGCTTGCTCGCCCTAGAACAACTGCTTCCTCTCATAATAAGGAGGACTGGGTCTTGTGTCGAGTGTTCTACAAGGACAAAGAAGCTTTCAATTCCAAACAAAGCAAGATTGGAATTCTTCGAAACAACAACATCAACAGCAACAACAGCTATGAAGATGATGATGATGATTATGTGGAGAATGAAGATAGCTCGTCTTCCCACCTCCCCCCATTAACAGATTCTTCTTACAACATCACTTTTGGTCACCACCAACAACAACCCATAGTACTTGGCAATTGTTTGAATGATGATCAGTATGAGCAAGTGCCCTGCTTCTCCATTTTATCCCAAAAAGCGTTATCTTCGCCTTCTGTGATCCCTCAGTTCAACTTCTCCCATCATCATGATATCAACGACAACAACTTGATCACCACTGCAACAACTGCCGTTTCCGATGCCTCGTTAATATTTCCTATTGATCATCATCATGTGATCAACAATGATCATTTGGAGGATCATGACACTTTGAGTAATTGTGACAAGAAGGTCATGAAAGAAGTGTTGAATCATCTCACCAAGGTGGAAAGCACCAGTTATAATAACTACAATTACCAGCTTTATTCATCATCCTTGAGCTTGGTTGAAGGAAGCCCTGAGAGCTACCTCTCTGAGGTGGGCATCGCCAACATTTGGAATCGTTATTGA ATGGACGAAATGTATGGCCTCCAACCGACGACGGCGACGGCGACGGCGACGGAGTACTCCGACAAGGCGCTGATGTCGCCGGAGAATCTGATCCTTCCGTCGGAGTACCAGGCGCTGCTCTCCTCGTCGGCGTTCCGCGATCGCCTTCCGTTTTTCGGATCCGACGAGTTCCTCTCCGCCGCCTCCGCCATCTCCGAAGCCGCTTCCATAACTCCCGATTTCCAACGCGAAGAAGACGTCTCCAGACTCATCAAGGCCAAAATCGCCTCTCACCCTACCTATCCTCGCCTCCTCCAAGCCTACATCGATTGCCAAAAGGTTGGTGCGCCTCCGGAGATAGCGAGTTTTTTGGACGAAATCCGCAGAAAAAACGAGCTTTATAAGCGCGAGTCTTCTATAATCTCCACGTGCTTAGGAGCCGATCCCGAGCTTGACGAGTTTATGGAAACCTACTGTGACATGTTGGTGAAGTATAAATCGGATCTCGCGAGGCCTTTTGATGAAGCGACCACTTTCCTGAAGAAGATCGAAACCCAACTGAGCAATCTCTGCACCAGTGCCACCAATACCAGAGGCCTTTCCGGCATCTCCAACAGAGAAAAGCTGATTATGTTTCCATTTGATAAATGTGGAGACGACGGTGCTGTATCGTCGGAGGAGGAGTTTAGTGGTGGAGAGGTAGAGGGACAAGAGCCGCAACTGAGAGTCGAAGATCGAGACCTCAAAGATAGACTTTTACGTAGGTTTGGCGGCCATATAAGTACCTTAAAGCTTGAGTTCTCTAAGAAGAAAAAGAAAGGAAAGCTACCTAGAGAAGCAAGGCAAACCCTTCTTGATTGGTGGAATGTTCACTATAAATGGCCCTATCCAACGGAAGCAGATAAGAATGCACTGGCTGAAACAACGGGATTAGATCAGAAGCAAATTAACAATTGGTTTATAAACCAAAGAAAGCGCCATTGGAAGCCGTCGGAGAACATGCAATTCTCGGTGATGGATAATCTTTCAGGACAATTTTACAGGGATGACTGA ATGGGGCGGCTGTTGAGCCCGGCGCCGACGCTGTGGCTCGTTTGCATCGCATCGATGCTCGCCACGGCATCGGTGGAGGGTAAGCCCACCGCAATCAAGCGCGCCGGCGGTCGGCGACTCGCCGAGGCCACCGACGCGGGCGAGCCCCTGCTCGTGTCTTTGCTGGACGGCACGGTCCGCGCGGTGGACAGGTCCTCGGGCGAGACGCTGTGGACGTTCTCCTCGGGCGGGCCCCTGGTTCAGGCGCACCGTTCGGTCTCGGACGGACCCGACGGCGGCGGCGGGGTCGCGATACGCGGACGGACGAACCCGACGGTGTTCCCCGGAATCGACGGCAGCCTCTACGCGTACGGCGGCGGGCACGGGTCGGGGTCCGGCGGAACAGGGGAGGTGTCGAGACTGCCCGTCACCGCGAGGCAGCTCGTGGAGGCTTCGCCATCCGTCACCAGGGACGGCGGGGTGGTCATGGGCACGCGCCGGAGCGTGGTGTTCGCGGTGGACAAACGCACCGGAGAACTCCTACGGAGCTTCGACACGGACGGGACGGTGGTGCACGGGGGAAACGACGACACAGGGTTCTTCCTGTCGAACGAGTCACCGACGGGGGACCCGACGCCAAACGACGTAAACGACGAAGCGTTTTACATCGGGCGGACCGAGTACGTGGTCCGATCCGTGGACAGCTCGACGGGACGGGAGCGGTGGAACGTGACGTACGGCGAGGTCACGCCGCTGACGTCGACCGCGCAGGGAGGGGGGGGGCGCGGCGGGCCGCTGTTCCTGCGCCGCGGCGACACAGCTGGCGACGGCGATGGCGACGCGGGTGACGGATCGAGTGCGCCGAGGCTCGAGTGGGGACCCGGCAACTCCATCGCGTGCGCCGGCGGCGCGGGACACGCCCACGCGTGGACCGCGCACATGCCCTCCACCCCCGTGGCCGTCCACGACGGACGCACCGGCCGCGCCATCAAGGGCGGTTCGCCTGGCGTCGGCGGCGGCGGCGACGGGGGCGCGGGGGGCGGCGACATCCTCGTCGGCGCGCACGGCGGCGGCCTCTTCGCGCTTCCGTCGACGGACGGCGGGAAGACGCGCGGGCTGAGTTTGGGGGTTCCCGGGGATTCCCTCGGTACCGTCGGCGCGCTCGTCCCGGTCGCCGTGTCCCCGACGGTTCGCCCGGACGACGATTGGGCGTGCATCCCCGAGAAGCTCTGGGACGACGCGCTCACCCCGGGCGGGCTGGACTCTTTCCTCGCGCTGCACGGGGTGAGCGGGATCGGTTTATCGACGGATGGGGGATTGGCGCTTCTCACGCCCCTGCAGCGGGCGGTTGGGTCGCCGGTCGGGGCCGCGGTGGTGGTCACCGTCGCCGTGGGTTTCGGAACCCTCGTGTCGTACGCGGCGTTGATCGCTCGAAGTCGTTTGAACGGTTTGAACGGTGGATCGAACAGTGGATCAAACGGATCGAACGGTTCCAAGCGCGGCAGCCGGGGTAAGAACCGAGGGAGGAGGAACAAGGGCAAGGGCGGAGTGGGAGGAGTGGGCGGAGTGGGAAGGGTTGGGGACGACGAGGCCGCCGACGAGGTTCCCGTAGCGACAGCGGACCGCGGAAACCCTCCGGAGCCGCTCCGGAGCGACTCCGGCGCGGTTCGCGTCGGCCGTCTCAGCGTCGGCCCGGGGATCCTCGGCTACGGTTCGTGCGGGACGATAGTGTTCGAGGGCGAGCTGGACGGCAGGCCCGTCGCCGTCAAGCGGCTCCTCGCGCAGTTCCACGAGCTCGCGCGCGCCGAGCTGGCGACGTTGATTTCGTCGGATGAGCACCCGAACGTCCTTCGATGCTTCGCGATGGAGGAGGATGCGGATTTTGTTTACGTCGCGCTGGAGCGTTGCAGCAGCGCGCTGGCGTCGGTGGTGGACGGCGGATCGATGGGCGTTGGGCTTGACCTCGCGACGAAGGACGGCGACGCCTTCGACCTGGTCGATCCGAGCACGGGGCGTCCGACTTCAGAGGGCATGACGCTGATGCGGGACGTGTGCGAGGGGTTGCACGCGTTGCACAGCCGCGGCATCGTGCACCGCGACTTGAAGCCCCAGAACGTGCTGGTCACCCCGCAGCGCCGCGGGAAGCTCGCGGACATGGGCCTGGCCAAGCGCCTGGGCGTCGGCGTCGGCTCGGACGTCTCCTTCGAGACGCACCTCGCCGGGGTGGGCGGCACCGATCATCATCACGCCGGGAGCGGCACCGCGGGGTGGCAGGCGCCCGAGCGCCTGCTCAGGGGCAAACAGGCCAGGTCCGTGGACACGTTCGCGCTCGGGTGCCTGATGCACTACTGCCTCACGGGGGGCGAGCACCCGTTCGGTGAACGGTACGAACGCGACGCCAACGTGATTAAAGGCAACGCGAACCTCGCCGCGGTGGGCCATATGCCCGAGGCGGCGGATCTCATCGGAAAGTTAATCGCGAGGGACGCGGACGCGAGGCCCTCGTCCGCGGAGGTTTTGCTGCACCCGTTCTGGTGGAGCGACGCCAAGAAGCTGACGTTCCTGTCCGACGTGAGCGACAGGGTGGAGATGGAGGACAGGGAGGTTGGGGGCAAGCGGCTGCTGGGTTCGTTGGAGCGGGACGCGATGAAAAACGCGCTGGGCGGCGGCGAGTGGGTCCCCAAGCTGGACCCGTCGCTGCTCGAGAACCTCGGCCGGTACCGCAAGTACAACGCCGCCGCCGTCCGCGACCTCCTGCGCGTCATACGCAACAAGATGAGCCACTTCAGGGAGCTTCCGGCCAAGGTACAGGCGACGGTGGGCTCGCCCCCGGACGCGTTTTACCGATACTTTGCGACGCGATTTCCCGGGCTGCTCCTCCACGCGTACGCCTTCGCCGCGCGCGAATGCGCGCACGAGTCCATGTTCCGGCGGTACTTTTTCCCGCACGAGGAGGACACGAGGTGTTCCGGGGAGGCGCTGGCGAGTTTGGAGCGCGCGAGCGCGGCGGTGGCGGCTAAAGCGGCGGAGAGGGCGGCTCGGCGCGAGGCGACAAACGATCGAACGAGCGTCGAGTACCCGGTGAGGCCGGGCGAGCCGGATTGCGTGTTTTGGATCAAGACCGGGCGGTGCAAGTTCGGCGCGGGGTGCAAGTTCAACCACCCGAGCGGATTGCACGGGTAA
Protein Sequence:
- >100424|Micromonas_sp._RCC299|C3H|100424
MGRLLSPAPTLWLVCIASMLATASVEGKPTAIKRAGGRRLAEATDAGEPLLVSLLDGTVRAVDRSSGETLWTFSSGGPLVQAHRSVSDGPDGGGGVAIRGRTNPTVFPGIDGSLYAYGGGHGSGSGGTGEVSRLPVTARQLVEASPSVTRDGGVVMGTRRSVVFAVDKRTGELLRSFDTDGTVVHGGNDDTGFFLSNESPTGDPTPNDVNDEAFYIGRTEYVVRSVDSSTGRERWNVTYGEVTPLTSTAQGGGGRGGPLFLRRGDTAGDGDGDAGDGSSAPRLEWGPGNSIACAGGAGHAHAWTAHMPSTPVAVHDGRTGRAIKGGSPGVGGGGDGGAGGGDILVGAHGGGLFALPSTDGGKTRGLSLGVPGDSLGTVGALVPVAVSPTVRPDDDWACIPEKLWDDALTPGGLDSFLALHGVSGIGLSTDGGLALLTPLQRAVGSPVGAAVVVTVAVGFGTLVSYAALIARSRLNGLNGGSNSGSNGSNGSKRGSRGKNRGRRNKGKGGVGGVGGVGRVGDDEAADEVPVATADRGNPPEPLRSDSGAVRVGRLSVGPGILGYGSCGTIVFEGELDGRPVAVKRLLAQFHELARAELATLISSDEHPNVLRCFAMEEDADFVYVALERCSSALASVVDGGSMGVGLDLATKDGDAFDLVDPSTGRPTSEGMTLMRDVCEGLHALHSRGIVHRDLKPQNVLVTPQRRGKLADMGLAKRLGVGVGSDVSFETHLAGVGGTDHHHAGSGTAGWQAPERLLRGKQARSVDTFALGCLMHYCLTGGEHPFGERYERDANVIKGNANLAAVGHMPEAADLIGKLIARDADARPSSAEVLLHPFWWSDAKKLTFLSDVSDRVEMEDREVGGKRLLGSLERDAMKNALGGGEWVPKLDPSLLENLGRYRKYNAAAVRDLLRVIRNKMSHFRELPAKVQATVGSPPDAFYRYFATRFPGLLLHAYAFAARECAHESMFRRYFFPHEEDTRCSGEALASLERASAAVAAKAAERAARREATNDRTSVEYPVRPGEPDCVFWIKTGRCKFGAGCKFNHPSGLHG*