Information report for XP_016487627.1
Gene Details
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Functional Annotation
- Refseq: XP_009620662.1 — PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
- Refseq: XP_016487627.1 — PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
- Swissprot: Q9C8N5 — STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
- TrEMBL: A0A1S4BFG4 — A0A1S4BFG4_TOBAC; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
- STRING: XP_009620662.1 — (Nicotiana tomentosiformis)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0010044 — Biological Process — response to aluminum ion
- GO:0010447 — Biological Process — response to acidic pH
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn248021
- Capsicum annuum: CA04g11250
- Manihot esculenta: Manes.18G099800.1.p
- Nicotiana benthamiana: Niben101Scf01365g07007.1, Niben101Scf03473g00010.1
- Petunia inflata: Peinf101Scf00660g02003.1
- Prunus mume: XP_008237278.1
- Prunus persica: Prupe.8G055100.2.p, Prupe.8G055100.1.p
- Solanum lycopersicum: Solyc11g017140.1.1
- Solanum melongena: Sme2.5_09817.1_g00003.1
- Solanum tuberosum: PGSC0003DMP400016291, PGSC0003DMP400016290
Sequences
CDS Sequence:
- >XP_016487627.1|Nicotiana_tabacum|C2H2|XP_016487627.1
ATGGATCCTGATGACAGTCTTAGTGAAGATCCTTGGACAAAGTCGTCTTCAGCTGGCAATGAATTACTGAAAATTGTGCCCTCAGATAACCATTCATTTACCAATTTCAATCTGCACGCGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAACAGACCAGGATTGAGCAACAGTTTTCTGGATTTACTCAACCAAAACACACATATCAGATGGATCAACATGGGAATCAGATGAATGAAAATCATGACTCAACCAGAACAAAGGACTGGGATCCAAGTACTTTGCTAAACAACCTTTCGTTTCTCGAGCAAAAGATTCATCAGCTCCAGGAACTAGTACATTTGATTGTTGGGCGGAGAGGTCAGACTGGGCTTCAGGGAAATGACCTTATAGTTCAGCAGCAACAGTTAATCACAGCGGACCTTACTTCTATTATAGTCCAATTGGTATCAACTGCAGGAAGTCTTCTTCCAACTATGAAGCGCACACTTTCCTCCGTGAGCCCTGCTGCTAGCCAACTTGTGCAGTTTGGTGGCGTCACAGTTCCTTCTGCAACATGTACTAATGGCGGGGGACTGCCATGTAATGATGGCGGTGTTACTAAAGTGGAAGATCAGTCAAACCACGTTGACCAGTTGAGAGATTGTGGGATTGAACAAAACCATGCTGTTGATGGACATGAATCAAAAGATGAAGATGAAGCTGAGGAAGAAGAGAACCTTCCTCCCGGTTCCTATGAGATTCTGCAGTTGGAGAAGGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCCAATTTGCGGATGCACATGAGAGGTCATGGTGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCAAGCTCCGAGCCAACACTCATCAAAAGGTATTCCTGTCCTTATGTTGGATGCAAGCGCAATAAGGAGCATAAGAAGTTTCAGCCTCTGAAGACGATCTTATGTGTGAAAAACCATTACAAGAGAACCCACTGTGAGAAAGCCTATACTTGCAGTAGATGTAATATAAAGAAATTTTCTGTTATTGCTGATCTTAAAACACATGAAAAGCATTGTGGTAAAGATAAATGGCTTTGTTCCTGCGGAACAACATTTTCTAGGAAAGATAAGCTTTTCGGACACATTGCCCTTTTTCAAGGTCATACTCCTGCAGTTCCACTGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGAGGCCAAACAAGTGAAGTCACCATGAAAGCACGACAAGAAGATTTTAAGGTAAATGCTTCACATGGCAATGAGTTTCAAAATCCCAGGGATATAAAAAGCGCTGCAGATGATCCAGGCAGTTATTTCTCGCCTTTGAACTTTGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCGTTTCTGCTATCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATATATGAGTTCTAGTGAACTGGAATAA
Protein Sequence:
- >XP_016487627.1|Nicotiana_tabacum|C2H2|XP_016487627.1
MDPDDSLSEDPWTKSSSAGNELLKIVPSDNHSFTNFNLHAQKWEGSSYLDQQTRIEQQFSGFTQPKHTYQMDQHGNQMNENHDSTRTKDWDPSTLLNNLSFLEQKIHQLQELVHLIVGRRGQTGLQGNDLIVQQQQLITADLTSIIVQLVSTAGSLLPTMKRTLSSVSPAASQLVQFGGVTVPSATCTNGGGLPCNDGGVTKVEDQSNHVDQLRDCGIEQNHAVDGHESKDEDEAEEEENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKEPSSEPTLIKRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRTHCEKAYTCSRCNIKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAVPLDETKGSAGTSDRGQTSEVTMKARQEDFKVNASHGNEFQNPRDIKSAADDPGSYFSPLNFDTSNLNGFQEFPRPPFDESDSSFSFLLSGSCEYPPHKAAKYMSSSELE