Information report for XP_016482767.1
Gene Details
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Functional Annotation
- Refseq: XP_009786293.1 — PREDICTED: zinc finger protein JACKDAW-like
- Refseq: XP_016482767.1 — PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
- Swissprot: Q9ZUL3 — IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
- TrEMBL: A0A1S4B1G4 — A0A1S4B1G4_TOBAC; protein indeterminate-domain 5, chloroplastic-like isoform X1
- TrEMBL: A0A1U7X614 — A0A1U7X614_NICSY; zinc finger protein JACKDAW-like
- STRING: XP_009786293.1 — (Nicotiana sylvestris)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA08g01030
- Nicotiana benthamiana: Niben101Scf01241g08005.1, Niben101Scf06133g00014.1
- Petunia inflata: Peinf101Scf00254g03010.1, Peinf101Scf01368g05001.1
- Populus trichocarpa: Potri.010G099200.6, Potri.010G099200.5, Potri.010G099200.4, Potri.010G099200.3, Potri.010G099200.2, Potri.010G099200.1, Potri.008G142400.5, Potri.008G142400.4, Potri.008G142400.3, Potri.008G142400.2, Potri.008G142400.1
- Prunus persica: Prupe.1G341000.2.p
Sequences
CDS Sequence:
- >XP_016482767.1|Nicotiana_tabacum|C2H2|XP_016482767.1
ATGGCTGCAGGGCCTTCATCAGCTGTGTTTCTTGCAATGAGAGAAGAAGAACAAAACCAACAGATGAAACAACAACAACAACAACAACAAGAACTTCACATTCAGCAGCAACCACAACAACAACAAGCACCACAAAAGAAGAGAAGAAATCAGCCTGGCACACCAAATCCAGATGCAGAGATAATAGCACTATCACCAAAGACCCTAATGGCAACAAACAGGTTCGTATGTGAGGTATGCAACAAAGGTTTTCAAAGGGAACAAAACCTACAGCTACACAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAAGTGAAGCGCAAAGTTTATTTGTGCCCTGAGCCCACATGTGTTCACCATGACCCTTCTCGAGCCCTTGGCGATCTCACTGGTATTAAGAAACATTACTCCAGAAAACATGGTGAAAAGAAATATAAGTGCGAAAAATGTTCCAAAAAGTATGCTGTCCAGTCTGATTGGAAAGCTCATACTAAAACCTGTGGTACTCGCGAATACAAATGTGATTGTGGCACCCTTTTCTCAAGGCGTGATAGTTTCATCACCCACAGAGCCTTTTGTGATGCATTGGCACAAGAAAGTGCGAGAAATCCACCAAGCTTGAGCAGCATTGGGAGTCATTTATATGGAAGTAGCAATAACATGAGTTTAGGCCTCTCAAAAATGGGTTCCCAAATTTCAGATCATTCTAACTCCACCGATATACTGCACTTTGGTAGCAGCAGCAACATCAAGACTAGTGGCCAATTCGATCACAGCAACCTTATGGGGACGACATCCATTGGCGCCTCAGCTTTCCGCCCTTCGACGTCCTTCTTTCTTCCAGCTGATCAAACAAATCATCAAGATTACGCGGCGAATAAGCCGTCAATACATGGCCTAATGCAACTTCCTGATCTCCACAACAATGGAAATAATAACAGCTCCCCTTCTGTGGCTAGCATGTTCAACCTCAATTTCTTCCAGAATAGCAACAACAATAGTGAAAATGTAGGAAGCCATGGAAATAGCAATATTTCAGCAGGAGGTGGTGGTCTATTGCTTCCGAGTCATCAGTTCAGTAACAGCAGTGGTGACGGGTCGAATAATTCATCCAACATGTTCTCAGCTAGTAGCCTTCTTGGTACTGATCATCACATAAGTTCCTCAATCCCATCTCTCTACGGTAACCATCTCAATAACAACAGTAGTGCTTCACCTGCGCCACCAATGTCTGCCACCGCGCTCCTCCAGAAAGCAGCTCAAATGGGTTCCACAACAAGCAACAACAACATGAACAACAGCAGTGCCTCCTTGCTCAAAGCCTTTGGTTCATCCTCTAGCGCCACCAAATCCGATATTCATCCGCCGCCACCTGTCAACTTTGGCAGCGTTGTTTATGGCGACCCTTTAAGCGAGAATCATCTTCATGATCTAGTCGTAAATGCTTATGGTAATAATGATCAAAATCAACAGAACGACTACGGGAATAACTTTGAACAGCAGCCACCACAGAAGAAGCAAATGATTAATAACTTTTCAATGGAAAATATGGGAACTGAGCAAGCTAATAGGTTGACAAGGGATTTTCTTGGAGTTGGGGAAATAGTAAGGAGCATGAGTGGAGGATTTGGAAGCAGCCACAGAGATCAGCAGCAGATGAGCACATTGGATTCAAAAGCTGCGCCGCCACCACAAAGCCATCATCAGTCTTTTGGAGGTGCTGGAAATTTTCAGTGA
Protein Sequence:
- >XP_016482767.1|Nicotiana_tabacum|C2H2|XP_016482767.1
MAAGPSSAVFLAMREEEQNQQMKQQQQQQQELHIQQQPQQQQAPQKKRRNQPGTPNPDAEIIALSPKTLMATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKYKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAQESARNPPSLSSIGSHLYGSSNNMSLGLSKMGSQISDHSNSTDILHFGSSSNIKTSGQFDHSNLMGTTSIGASAFRPSTSFFLPADQTNHQDYAANKPSIHGLMQLPDLHNNGNNNSSPSVASMFNLNFFQNSNNNSENVGSHGNSNISAGGGGLLLPSHQFSNSSGDGSNNSSNMFSASSLLGTDHHISSSIPSLYGNHLNNNSSASPAPPMSATALLQKAAQMGSTTSNNNMNNSSASLLKAFGSSSSATKSDIHPPPPVNFGSVVYGDPLSENHLHDLVVNAYGNNDQNQQNDYGNNFEQQPPQKKQMINNFSMENMGTEQANRLTRDFLGVGEIVRSMSGGFGSSHRDQQQMSTLDSKAAPPPQSHHQSFGGAGNFQ