Information report for XP_016479571.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_009778516.1 — PREDICTED: uncharacterized protein LOC104227857
- TrEMBL: A0A1U7WMK7 — A0A1U7WMK7_NICSY; uncharacterized protein LOC104227857
- STRING: XP_009778516.1 — (Nicotiana sylvestris)
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn265511
- Arachis hypogaea: Ahy013212
- Cicer arietinum: XP_004485592.1, XP_004485591.1
- Glycine max: Glyma.15G054200.2.p, Glyma.15G054200.1.p
- Nicotiana benthamiana: Niben101Scf00477g00010.1, Niben101Scf02537g13011.1
- Petunia inflata: Peinf101Scf00657g05024.1
- Prunus mume: XP_008237173.1, XP_008237174.1
- Prunus persica: Prupe.8G062800.1.p, Prupe.8G062800.2.p
- Sesamum indicum: XP_011100981.1
- Solanum lycopersicum: Solyc04g074250.1.1
- Solanum tuberosum: PGSC0003DMP400011381
Sequences
CDS Sequence:
- >XP_016479571.1|Nicotiana_tabacum|C2H2|XP_016479571.1
ATGTTGAATAAGGATGGTGAACCGGTGGATTTGGCGGTCCTGGGGACGTTGGAGGATCCGTTTGGCGAAGAGATGAGGCGGAGGACGAAAGGATTGGGGAGTTCAGAGGAGCTGTTAAGGTTTCTGGGGAGATTGAATGGGCAATGGGGGAGTACTAGGAAGAAGAGAAGGATTGTGGATGCAGGTGAGTTCGGGAATGTGCTGCCAAAAGGTTGGAAGCTTTTGCTTTCTATTAAGAGGAAAGAAGGCCGTGTATGGTTGCATTGCCGACGCTACATAAGCCCTAGTGGACGGCAATTTGAGACATGCAAGGAAGTCTCTTCATATTTGCTCTTTCTTCATGGTGAACGAAATGAAAATCTTCCAACATATGCGAAGAGTTGTGGAACTGCTGAGATCACTAATACATGTGCTTTAGTTAGTACTTCAGACCTTCAGGATGTCAGCAACAATGAAGGCCCTCTTTTTCACAACTCATCCCCTGCTGTTGATCATGGGGAGTTGCAAGTTTTATTGAATTTTGGGGAACTGTCAGAGGTCCAAGTAGGAGATCTTTTGCACTGTGACAAATGCAATGTGACCTTTAATGGTAAGGATGATTTATTGCAGCACCAGTTATCTCATCGGCGAAGGAGATCTAGAAATGGTCAATCCATTACTGATGGGGTAATAATTAAAGACGGAAAGTTTGAATGTCAGTTCTGCCATAAGACATTTGAAGAAAGGCATCGGTACAATGGTCATGTTGGGGCCCATGTTAAGAACCAGGTAAAGACTGTGGATGGATCTGTTTCAATCAATGTGGGAGAGTTTGTTGAACCTGTGGCATCTAGTGGAGCCATGCTGAGGGAGTCCATAATGCAGGATTCAGTTGTTTCACTGAGGAACGTGACAGAAATTGCTGATTTAAGTGCAGATTATGGTAGGAAATTTGCACCTTCTGGTAAAATCCAGGAGGAGGATCACATGGAGATTGACGATAAACTAGAAGGTTTGAGCGAGGCTTTGAATACTGCCCCAAATAAAACTAACATGTGTTTAAGTTCTGAAGCGATTACATGTAATAACATGGGTAATATTTATTGTGAAACACCTTGTGACTCACTGATTGCTGACGTTGTAGCTGAAGGAACCAATAAGGGTTGTCATAAACAGGAAGGGAATTCTGAGAGCTGTTCCCCTATTTCATTGAAAGAACAAACATGTGTGAATACACGCAAAGTAATTGACTCTTCCATCATAGAAGAGCCTGAACAGGAAGGTTTACTTTGTTCAACTGGCATTGTTGATTCGTGTGGTGTTAGTGTGGAAGATGGCAAGTTTTCCCCTGCAGTGGAAGAGAGCAAAGTAGAGGGTGATAGGTTTGTAGATAATGAGTCATCAACTGCTTTATGCAGTAATGTCAGTGTGCTGGATGAGAACAGCTTGACAAATGCCAAACAAGTTTCATGCACTGAAGATCACTCAGGGAAGAACATTGATGTTCTGAATCGTGTACCCTTTCTGGCAGAAACATCTAAAGAAAACAGAGGTTTGAGCAGCACAGGTACCCCATCTTGTGACAAGGAAGGATCCGCAGTAGATTATGTAAAAAGAGTTTTTCATGGTTGCATAGGTGAGCAAAAACCTAGTAACATGATGTGTAATATAGAAAATGATGAGTGTGGCAGTCTTGTTGATTCAAATGACAATAAGCTGATTATGAAGGAGGATAGTTGTTCATTTGTTCCACATCCAGATAAACATGTAAATACTGCTGAAAAAGATGTAAGTGATGGTTCAGCTTGCTTTCTAGAGGAGCCTGAACAGCAGAAAGGTGATGAGAACGGTCTGCTTTCTCCTGCATGTGACAAGAACGGTGTTGAAGCTCAACTTCTTAATGATTCAAAGACAACTACAGATGAGCCTAAGGTTAGTGAGCTGCAGAGTGTTAGTAGTAATATAAAGGGATTTCCTTGTAACAATCATGCTGTGCAAAAAGCTGATGCCAGTGATATAGAGAAGGAAAAAAGTCTTGCATTCTGCTCGCTTTTTCCGGCCACGAATTTGAGAGCATCTTGTGCTGAAGATCATGATACTAAAGTTTACCAAAGCACAATTGAGGTTAATGATCAGCAAAGGGCTGCAAACGCATTGTTTTCTTCAACCAATGTACCAGAAGCTTCTACCAGGGAAAATACCACGAACAGGAGCTATAACAACCCTTTGAATGGATCCAAATTTGATGGTCTTGAAAACTCTAGGCATCATGATCTAAATGTTGTTTTCGGCAACTCTCATGTGGATCTAGATGCGAATTTGAACTGTACAACCTTCCAACTTGGCATGGAGGAAACATATGGAGTTCAGGCTAATCTCCTTGGAAGATTTGAGTCCGATAAACAAGGAGAAGTTGGGATTGATTTAAGTGATTCAGCTTTCAAGGGGAAAACAGGAGATCTTGAAAGTAACTTCAACACGGTTTTTCATAGTCAATTGTGGGATGAACAGAAAGTAGATGAAGTTGGTGACTCTGGAAAGAAGATTATTACTGGGTTTGGTTGTGGAGATGCCAAACCTAATGAGGATGTCATGGCTGGCAGCATTTGGAGAACGGGTGTAGAAAATGTCATGCACGGTGACTCAGCAGACAATTCAACCTCGGTAGTGCAGTCATCGAACTGTTTCCAGACCTATGATGTTTTGTCAGATAAGGTTCAAAGTCTCTTCGGAGAAAATGAGAAGTATGACGGCAACACAGGCTTTGATGGGTTGAGATCAGACAGGACTGGACCTGTAGAATATAGTTTCATGAGCACACAGAGTTTAAATTCTCTTCAAGAAGAGCCTAGAGCTTTACCTTACGATGTGGATATAGAACAAGGATTTAATACGTCATTTTGGCTTGGAAAAGATGATGTAATGCCAAATTTAGCTGGCAGGAATCAGGTAATGTTGGTATGCGTTTGGTGCAGAAATGAGTTTTATCAAGAGCCTAACCAGTTAGGAGCAGAAGCAGGTTCAATTGGTTCCATGTGTCCAACCTGCAGTGGAAGGATCTCAGGGCAGTTTAGCTTTTTGTAG
Protein Sequence:
- >XP_016479571.1|Nicotiana_tabacum|C2H2|XP_016479571.1
MLNKDGEPVDLAVLGTLEDPFGEEMRRRTKGLGSSEELLRFLGRLNGQWGSTRKKRRIVDAGEFGNVLPKGWKLLLSIKRKEGRVWLHCRRYISPSGRQFETCKEVSSYLLFLHGERNENLPTYAKSCGTAEITNTCALVSTSDLQDVSNNEGPLFHNSSPAVDHGELQVLLNFGELSEVQVGDLLHCDKCNVTFNGKDDLLQHQLSHRRRRSRNGQSITDGVIIKDGKFECQFCHKTFEERHRYNGHVGAHVKNQVKTVDGSVSINVGEFVEPVASSGAMLRESIMQDSVVSLRNVTEIADLSADYGRKFAPSGKIQEEDHMEIDDKLEGLSEALNTAPNKTNMCLSSEAITCNNMGNIYCETPCDSLIADVVAEGTNKGCHKQEGNSESCSPISLKEQTCVNTRKVIDSSIIEEPEQEGLLCSTGIVDSCGVSVEDGKFSPAVEESKVEGDRFVDNESSTALCSNVSVLDENSLTNAKQVSCTEDHSGKNIDVLNRVPFLAETSKENRGLSSTGTPSCDKEGSAVDYVKRVFHGCIGEQKPSNMMCNIENDECGSLVDSNDNKLIMKEDSCSFVPHPDKHVNTAEKDVSDGSACFLEEPEQQKGDENGLLSPACDKNGVEAQLLNDSKTTTDEPKVSELQSVSSNIKGFPCNNHAVQKADASDIEKEKSLAFCSLFPATNLRASCAEDHDTKVYQSTIEVNDQQRAANALFSSTNVPEASTRENTTNRSYNNPLNGSKFDGLENSRHHDLNVVFGNSHVDLDANLNCTTFQLGMEETYGVQANLLGRFESDKQGEVGIDLSDSAFKGKTGDLESNFNTVFHSQLWDEQKVDEVGDSGKKIITGFGCGDAKPNEDVMAGSIWRTGVENVMHGDSADNSTSVVQSSNCFQTYDVLSDKVQSLFGENEKYDGNTGFDGLRSDRTGPVEYSFMSTQSLNSLQEEPRALPYDVDIEQGFNTSFWLGKDDVMPNLAGRNQVMLVCVWCRNEFYQEPNQLGAEAGSIGSMCPTCSGRISGQFSFL