Information report for XP_013906482.1
Gene Details
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Functional Annotation
- Refseq: XP_013906482.1 — hypothetical protein MNEG_0492
- TrEMBL: A0A0D2KB63 — A0A0D2KB63_9CHLO; Uncharacterized protein
- GO:0009616 — Biological Process — virus induced gene silencing
- GO:0035194 — Biological Process — posttranscriptional gene silencing by RNA
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G05460, AT4G15570
- Fragaria vesca: FvH4_4g36210
- Glycine max: Glyma.06G197700.1.p
- Oryza sativa: RLS3;OsPLS2
- Solanum lycopersicum: Solyc06g010100.2
Sequences
CDS Sequence:
- >XP_013906482.1|Monoraphidium_neglectum|C2H2|XP_013906482.1
ATGGCATGTCCAGGGCAGGAGGACGCATGTGCCGCCGCACTACGCAAGTTGTGCTACGAGGCTCAGCTTGCGCACCCTGATAAGCCAGGTGCATCGCTGCCCGCCGCTTTGGGCGCCATCGGCCAGCTGCTCAAGCGCAAGACGTACTCGGGGCTCAAGACGTTCGTGCGCAACCAGCGTCCCCACGAATTTGCCGTGATCAACCTCAAAAAAGGCCAGTACGTGGCTTGCCTCACCCTGCCGGCGGCTGGGGCCGCAGGCAATGCAGGCTCCCTCAGCTGCGGCCTGTGCGGCATCTCCTGTAGCAGCGCCTTTAACCTGCAGCAGCACCTGGAGGGCAAAGCGCACCAGGCAAAGGCAGCATCCGAGGAGGGCAGGCTCTGGTGCAGCCTGTGCTCTACGCGGTCGCCCAACGCGGCCGCGCAGGCGGCGCACGTCCGCGGCGCCCGCCACAAGGCGGCGCTGCTGCAGCGCTCCAATGCGGCAGGCGGCGCCCTGGGCGCAAGCCAGGAGGGTGTCGAGGTGGCGCTGCAGCCGGCAGAGATCACAGGGCTTGCGCCCGGGCAGGTCAAAGTGGCATCTCTGCTCATCACCAACAGCGGCCATGCCGTTGTGCGCGTGGCGGCGGTGTCCCAGATGCGGGCCGTGCCAGGCGTGGTGGTGTCGTCAATGGCTGACGGGCAGTGTCTGTGGGGCCTGGGTTACATCTACTCACTCTTGGTGGTTGACCTGGGCAGCTTCTGCGTCAGCTGCCTGCTCTCAGCAGCCTGCGACGGCGGCGATCCCATCGCTCGGGAGCTGGCGCCGTCGGCACCCTACGCGCCCAAGCGCCCGCCGCCCAATGAGGCACGCTTGGAGATCGTGCCGGGGGAGAAGCCGGCGCGCCACAGGAGCAGCTGGGCGCGCCCGCCTGGCGCCCACGAGGTGCCGGACTGGCTGCGGTCTGCCCTCAGGGCAGGGGAGCTGTGGCGTGTGCAGGAGGAGCTGGACAAAGCGGCCAACGGCGCGGAGCTGCACGCCAAGCGGATGGCCCTGATGGTGTGGCTGGAGGAGCTGCAGCAGGAGCGGGATGTAAGGCAGTACGACATAGACGGGGCGCAGCTTGAGAGCACGCCCGGTGGGCGTCTGCTGGCGCTTAAGGTGCCTGGCCTGGCGGAGAGCCGGCCCTCTGTGATGCTGGGGGACCGGCTGTACGTCAGGCGCAGCGACGGCGAGCGGCGCGAGTGGGAGGGGTGCCGCGTGCGGTTCTCCATCAAGCGGTCATCTTTTGTGTTCATGCACGAGGCCCTATCCCTGGTCCAGTACAGGCAGCTGCCCGAGCAGCTGCTGCTGCCCATGGGTGTGCAGTGTGAGGTGGCCCACAGGGTGGCGACCCACCCTGCCAAACAGGCCGTGGCTTGGGTCAACCCCTTCCTCAACCAGGAGCAGCGCGGGGCAGTGGAGGCCGTGCTGCGCGGCGGCCACGCACCCGCGCCCTATTTGGTGTTTGGCCCGCCGGGGACCGGCAAAACATCGACGCTGGTGGAGGCGGCGGTGCAGGTGCTGCGCACGCAACCGTTTGCGCGCGTGCTTCTGCTGGCACCCTCCAACACGGCCGCGGACCAGCTTGCGCTGCGCCTCATGGGGCCGGCCGCGGGGCGCCCTAAGAGCGAGATGCTGAGAGTGAACGCCTACCAGAGGCCCAGCAGCGACGTGCCCAGGGAGGTGATGGACATCAGCACCTACGTGGACCAGATTGGGGCAGGCAGCGGCTACTTCAAGCTGCCTGAGACCGCTCAAGTCGTGTCAAAGCGCGCCGTTGTGGCGACCTGCGTGATGGCGTCCAAGATCTACGCGCAGGGCCTATTCAGCGGCTGGTTCACCCACATTTTCATGGACGAGGCGGGCCACGCCGAGGAGCCGCTCGCGCTGGCCGGCATCGCGGGGCTCGCCGGGCCCAACACGCGCGTCGTGCTGGTGGGGGACCCGCGCCAGCTCGGGCCCATCATACACAGCCGCCTGGCGCGTGACGCGGGCCTCGGGACGAGCTGGATGGAGCGGCTGCTGGGGCGCGCGCCGTACGCGCCCGACGCGCAGGGGTGCTACGACGCGCGCTTCATTACGCAGCTGGTGCGCAACTACCGCTCCCACCCCGACCTGCTGACGCTGCCGAGCACCCTCTTCTACGGCGGCCGCCTAGTGGCGTGCGCAGACCCCGTGGTCACACACAGCGTGCTGCAAAGCGGCTTTGAGCTGCCAAACCAGAGGTTCCCTCTGCTTTTCCACGGCCTGGTGGGCAAGGACGAGCGCGAGGGCAACTCGCCCTCGTGGTTCAACTCCATGGAGGTGCTGCAGGTGGTGAGGTACATCGAGAAGCTGCGGGCGGTGCGCCGCAACCCCATCAGCACGGCAGACATCGGCGTGGTCACCCCGTACCACAAGCAGGTGCAGAAGCTGCGCCGCGCCTTCAGCTCCAAGGGCATGGACGGCGTCATGGTCGGCAGCGTGGAGCAGTTCCAGGGGCAGGAGCGCAAAGTGATCATCATCTCAACTGTGCGGTCCACCTCGGAGTACGTGGATTTTGACCTGAAGCACCGCCTGGGCTTTGTGCGCAACGAGAAGCGCTTCAACGTCGCCGTCACGCGCGCCAAGGCACTGGTCATCGTGGTGGGCAACCCCGAGGTGCTAATCACAGACGACTCCTGGGCGGCGCTGCTGCGCCTCGCGGTGCGCAACAACGCGTACACTGGCAGCGCCCCGCTGCCCGGCGGCCTGGAGGCCGAGCGCGGCGGCGGCGCTCCCCAGGCTGCCGGCGGCGCCGGCGAGCAGGATGCGGGGATGATGAGCAGCTTGGCACGCATGATGCGGGGTCTGGCCATCCAGGGCAGCGGGCGGTGGGGCAGCGCAGCGGCGGCGGCAGAGGCGGATGAGATGGTCCTGGCTGGTGACGGGGCGGGCGCTCGCGTTGAAGGTCTGCCAATGCGGCGGCTGGAGTAG
Protein Sequence:
- >XP_013906482.1|Monoraphidium_neglectum|C2H2|XP_013906482.1
MACPGQEDACAAALRKLCYEAQLAHPDKPGASLPAALGAIGQLLKRKTYSGLKTFVRNQRPHEFAVINLKKGQYVACLTLPAAGAAGNAGSLSCGLCGISCSSAFNLQQHLEGKAHQAKAASEEGRLWCSLCSTRSPNAAAQAAHVRGARHKAALLQRSNAAGGALGASQEGVEVALQPAEITGLAPGQVKVASLLITNSGHAVVRVAAVSQMRAVPGVVVSSMADGQCLWGLGYIYSLLVVDLGSFCVSCLLSAACDGGDPIARELAPSAPYAPKRPPPNEARLEIVPGEKPARHRSSWARPPGAHEVPDWLRSALRAGELWRVQEELDKAANGAELHAKRMALMVWLEELQQERDVRQYDIDGAQLESTPGGRLLALKVPGLAESRPSVMLGDRLYVRRSDGERREWEGCRVRFSIKRSSFVFMHEALSLVQYRQLPEQLLLPMGVQCEVAHRVATHPAKQAVAWVNPFLNQEQRGAVEAVLRGGHAPAPYLVFGPPGTGKTSTLVEAAVQVLRTQPFARVLLLAPSNTAADQLALRLMGPAAGRPKSEMLRVNAYQRPSSDVPREVMDISTYVDQIGAGSGYFKLPETAQVVSKRAVVATCVMASKIYAQGLFSGWFTHIFMDEAGHAEEPLALAGIAGLAGPNTRVVLVGDPRQLGPIIHSRLARDAGLGTSWMERLLGRAPYAPDAQGCYDARFITQLVRNYRSHPDLLTLPSTLFYGGRLVACADPVVTHSVLQSGFELPNQRFPLLFHGLVGKDEREGNSPSWFNSMEVLQVVRYIEKLRAVRRNPISTADIGVVTPYHKQVQKLRRAFSSKGMDGVMVGSVEQFQGQERKVIIISTVRSTSEYVDFDLKHRLGFVRNEKRFNVAVTRAKALVIVVGNPEVLITDDSWAALLRLAVRNNAYTGSAPLPGGLEAERGGGAPQAAGGAGEQDAGMMSSLARMMRGLAIQGSGRWGSAAAAAEADEMVLAGDGAGARVEGLPMRRLE