Information report for XP_010927560.1
Gene Details
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Functional Annotation
- Refseq: XP_010927559.1 — lysine-specific demethylase REF6
- Swissprot: Q5N712 — JM705_ORYSJ; Lysine-specific demethylase JMJ705
- TrEMBL: A0A2H3YDT2 — A0A2H3YDT2_PHODC; LOW QUALITY PROTEIN: lysine-specific demethylase JMJ705-like
- STRING: XP_008797141.1 — (Phoenix dactylifera)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn113981, CEY00_Acc26800
- Capsicum annuum: CA03g25230
- Musa acuminata: Ma06_g01490, Ma11_g08350, Ma10_g03830, GSMUA_Achr11P08770_001, GSMUA_Achr11P11060_001
- Panicum virgatum: Pavir.9NG271400.1.p, Pavir.5KG706100.1.p
- Setaria italica: SETIT_000062mg, Seita.5G420700.1.p
- Setaria viridis: SEVIR_5G426200v2
- Solanum lycopersicum: Solyc03g111590.2.1
Sequences
CDS Sequence:
- >XP_010927560.1|Elaeis_guineensis|C2H2|XP_010927560.1
ATGGCAGCAGCAGCATCAGCGTCTTCCGCAGAGCCGCCCCCACCTCCCCCTCCCGCGGAGGTTCCCCAATGGCTCAAATCCCTCCCCCTGGCTCCCGAGTACCACCCCACCCTGGCCGAGTTCCAGGACCCCATCGCCTACATCCTCAAGATCGAGAAGGAGGCCTCCTCCTTTGGCATCTGCAAGATCGTGCCGCCTCTCCCCGCGCCGCCCAAGAAGACGACCGTCGCCAACCTGAACCGCTCCTTCGCCGCCCGCGAGCCAAACCCCAAGAAACCCCCCACCTTCACCACCCGGCAGCAGCAGATCGGCTTCTGCCCCCGCCGCCCCCGCCCTGTCCAGAAGCCCGTCTGGCAGAGCGGCGAGCACTACACGCTCCAGCAGTTCGAGACCAAGGCCAAGCAATTCGAGCGCGCCTACCTCAAGAAGGTCACCGCCGCCAGGAAAGGTGGCCTCCTCTCGCCGCTCGAGATCGAGACCCTCTTCTGGAAGGCCTGCGCCGACAAGCCCTTCAACGTGGAGTACGCCAACGACATGCCCGGCTCCGGTTTCGCCCCCCTTGGGGCTGCCCGGCGGTGGCGGGAGGAGGAGGCGACCAACGTTGGGGAGACGGCGTGGAACATGCGGGGGGTGTCGAGGGCTAAGGGCTCGCTGCTGCGGTTCATGAAGGAGGAGATCCCTGGGGTGACGTCGCCGATGGTGTATGTGGCGATGATGTTCAGCTGGTTCGCCTGGCATGTCGAGGACCACGAGCTCCACAGCTTGAATTACCTGCACATGGGGGCCAGCAAGACCTGGTACGGCGTGCCCAGGGATGCTGCGCTTGCTTTCGAGGAGGTCGTTCGAGTGCACGGCTACTGCGGGGAGGTGAATCGTCTTGTGACATTCGCACTCCTAGGTGAAAAGACCACCGTCATGACTCCTGAAGTGCTTATTGGTGCAGGAATCCCTTGCTGCAGATTGGTACAAAATGCTGGAGATTTTGTTGTCACTTTCCCTGGAGCTTATCATACAGGGTTCAGTCATGGATTTAACTGTGGGGAGGCAGCAAATATTGCAACTCCTGGATGGTTGAGGGTAGCCAAAGAGGCTGCAATTCGAAGGGCTTCAATTAATTATCCTCCTATGGTGTCTCATTTTCAGTTGCTTTATGCACTTGCACTATCTTTATGTACAAGGATGCCCAGGGGCATCAGAAGTGAACCACGAAGTTCTAGACTGAAGGATAAAATGAAAGGAGAAGGAGAAGAGATGGTGAAGAACATATTTGTTCAGAGTGTGATTCAAAATAATCACCTACTTAGTGTTCTTCTTGATAAAGGATCTTCCTGTGTAGTACTTCCACAAAATGGACCCGACAGTCCTTTATGTTCAAATTCACTTGTCAGATCTCAGGTAAAGGTAAAACCGAGATTATCACTTGGTTTATGCAGTCACCAGGAAGCACTGGAAGCATCAAGACTTTTACCTTCCAATGATATGCTGGGATGGAATGCAGGGATCAGAGACTTAAGTGGTTTCGGTACGCTTAAAGGAAATTCTGTATCTGTATGTCAAGGAAAGATAATTTCATCAGCAACTTGCAAATTTGGTACTGCTGATTTCTACACTTCTTCTTTAGACTCACAGAACGGGGAAGGTGAAAAAGAAGGTACACTCCAAGGTGATGGGTTGCTAGATCAAGGACTATTGTCATGTGTCACATGTGGAATTTTGAGTTTTGCATGTGTGGCTGTCATTCAACCAAGAGAAGCGGCAGCTAAATGCCTCATGTCCACCGATTATGGTTTCCTTGGTGATCATATTGATGGTTCTGGAGAACTAAGAGATGTAAACCAAGACACAAATAGGAGGACAGGACAAATTGAAAGGCACATTGAAGATATGGTGGATGATTACTGGATTCCTTGTGGCAGATATTCAGCACAAGTTTCAGAACAGGGTGTTGAAGTGCTGTCTGATGATACAGGTCAGAGAGGCATATCTGCACTTGATCTTCTAGCTTCTGCATATGGGGGTACATCAGACACTGAGGACGAAGAAATTCTGCATGAGAAATCTGCTTGTACTGATGAAAATGATATCAAAGACTCCCCATTATCATGTAAACCAAATGAACATCCAAACGTTGCAAATGAGTTGCAAAACTTCTGTTCAAGTAAGGATCCAAATAAGGAGATAGATTTGTCCTTAGTTGGATCAGACAGCCAAAATGGGACTGCTCAAAATTCTCACTACACTGGTGGTTCAGATGATTCAAGTAAACTAACAAATGTTAGTGCTGGAGAGAAATGCCAGCTGAAATTGGAGTTCCATGGCAGTAATCAGCCAGAAAATGCAAAATCTGCTGAAGAAGATAGTTTAGATGATAATAGGGAAATCACAACTTCTAATAGTTCAATAAAATCCATGGAGGAACCAAGAGATTTTAGTTATAGGGAAGCAGATGGTGCTTGCCATGCCATTGGAAGTGATGACAACCATCAGAGCAACATGAAGATAGGGAACCCAGATTTTGGTTCTGAAAATCTCTCCATTCAACCTGATGTCTGCTCTGAATCATCGGAACCAACAAAAGATTATCCTAAAATAGAAGCAGAGGCAAAACTATTGGCAGAAGAGCTGGGAATTGATTATACTTGGAAGGATGTTCATTTCAAAGAGGCCACTAAGGAAGACCAAGAGAGAATCCGGGCAGCCTTGGAAGATGAGGAAGCCATACCTATGAACAGTGACTGGGCTGTGAAATTGGGCATCAACCTATATTACAGTGCTAATCTTAGCAAGTCTCCCCTCTATAGCAAGCAGATGCCATACAATGCAGTCATATACAAGGCATTTGGTTGCAATTCCCCAGGCAACTCCTCTTCAAAGCCAAAGGCTTCTTCTGGGAGGAAACCAGGAAGGGAGAAGAAAATAGTTGTTGCTGGTAGGTGGTGTGGGAAAGTTTGGATGTCAAATCAGGTCCATCCATATTTAGCTCATAGAAATGAAGATCATGAGCATGATCATGTGGAAAAACTATACTCTCAAAGCACTGGTCGAAAGTCTAAGGTTGAGGCAGATTTGGAGGATGCACCTTCCAAAAGCATCCCATCGACTAGCAATGCAACTGCTGCAAGAAAAGCTGGAAAGAAGAGGAAGAAGCCTCTGAGGAAGGCAAGCAACAAAAAACCCAGACGCACACAAATAGACAACTCAGAAGATGTGGAAGGTGTGGCTGAGACCCCCTCATCATCATGTGGAAGGGTTCTAAGAAGCAGCCGCTCAAAGCATACAGAGATTGCTAACCGGAAAAAATTGAACATGAAAGATGAAGCTGAAGGAGGGCCAAGCACACGCCTTCGGAAACGGCCATCAAAGGCCACTGAAGAGGTCAAGACTAAATCAGGAGGGAGGAAGCAGATTATGAAGAGGAAAGCAAAGAAAGCACAGGCTACAAATCTTGTAACTAAAGATGAGGATGGGGAGCATACATGCGATATTGAGGGGTGTTCGATGAGCTTTAGCACAAAACAAGATTTGACATTGCACAAGCGTGATATCTGCCCCGTCAAAGGATGTGGTAAGAAGTTTTTCTCTCACAAGTATCTGGTGCAGCATCGAAAGGTGCACATGGATGATCGTCCACTTGAGTGCCCGTGGAAGGGGTGTAGTATGACGTTCAAGTGGGCATGGGCAAGAACAGAGCATATAAGGGTCCACACAGGTGACCGGCCCTATGTCTGCCAAGAACCAGGGTGCGGTCAGACATTCCGGTTTGTATCAGATTTTAGCCGTCACAAGCGCAAGACAGGTCATTCGATAAGAAAGGGCAGGAGATGA
Protein Sequence:
- >XP_010927560.1|Elaeis_guineensis|C2H2|XP_010927560.1
MAAAASASSAEPPPPPPPAEVPQWLKSLPLAPEYHPTLAEFQDPIAYILKIEKEASSFGICKIVPPLPAPPKKTTVANLNRSFAAREPNPKKPPTFTTRQQQIGFCPRRPRPVQKPVWQSGEHYTLQQFETKAKQFERAYLKKVTAARKGGLLSPLEIETLFWKACADKPFNVEYANDMPGSGFAPLGAARRWREEEATNVGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHELHSLNYLHMGASKTWYGVPRDAALAFEEVVRVHGYCGEVNRLVTFALLGEKTTVMTPEVLIGAGIPCCRLVQNAGDFVVTFPGAYHTGFSHGFNCGEAANIATPGWLRVAKEAAIRRASINYPPMVSHFQLLYALALSLCTRMPRGIRSEPRSSRLKDKMKGEGEEMVKNIFVQSVIQNNHLLSVLLDKGSSCVVLPQNGPDSPLCSNSLVRSQVKVKPRLSLGLCSHQEALEASRLLPSNDMLGWNAGIRDLSGFGTLKGNSVSVCQGKIISSATCKFGTADFYTSSLDSQNGEGEKEGTLQGDGLLDQGLLSCVTCGILSFACVAVIQPREAAAKCLMSTDYGFLGDHIDGSGELRDVNQDTNRRTGQIERHIEDMVDDYWIPCGRYSAQVSEQGVEVLSDDTGQRGISALDLLASAYGGTSDTEDEEILHEKSACTDENDIKDSPLSCKPNEHPNVANELQNFCSSKDPNKEIDLSLVGSDSQNGTAQNSHYTGGSDDSSKLTNVSAGEKCQLKLEFHGSNQPENAKSAEEDSLDDNREITTSNSSIKSMEEPRDFSYREADGACHAIGSDDNHQSNMKIGNPDFGSENLSIQPDVCSESSEPTKDYPKIEAEAKLLAEELGIDYTWKDVHFKEATKEDQERIRAALEDEEAIPMNSDWAVKLGINLYYSANLSKSPLYSKQMPYNAVIYKAFGCNSPGNSSSKPKASSGRKPGREKKIVVAGRWCGKVWMSNQVHPYLAHRNEDHEHDHVEKLYSQSTGRKSKVEADLEDAPSKSIPSTSNATAARKAGKKRKKPLRKASNKKPRRTQIDNSEDVEGVAETPSSSCGRVLRSSRSKHTEIANRKKLNMKDEAEGGPSTRLRKRPSKATEEVKTKSGGRKQIMKRKAKKAQATNLVTKDEDGEHTCDIEGCSMSFSTKQDLTLHKRDICPVKGCGKKFFSHKYLVQHRKVHMDDRPLECPWKGCSMTFKWAWARTEHIRVHTGDRPYVCQEPGCGQTFRFVSDFSRHKRKTGHSIRKGRR