Information report for XP_010905076.1
Gene Details
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Functional Annotation
- Refseq: XP_010905076.1 — zinc finger protein GAI-ASSOCIATED FACTOR 1
- Swissprot: Q9LVQ7 — IDD1_ARATH; Zinc finger protein ENHYDROUS
- TrEMBL: A0A2H3X1E4 — A0A2H3X1E4_PHODC; protein indeterminate-domain 1-like
- STRING: XP_008776861.1 — (Phoenix dactylifera)
- GO:0009937 — Biological Process — regulation of gibberellic acid mediated signaling pathway
- GO:0010029 — Biological Process — regulation of seed germination
- GO:0010431 — Biological Process — seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Fragaria vesca: mrna29562.1-v1.0-hybrid
- Gossypium hirsutum: Gh_D11G1873
- Juglans regia: WALNUT_00007357-RA, WALNUT_00005071-RA
- Lotus japonicus: Lj2g3v1779750.1
- Manihot esculenta: Manes.S010100.1.p
- Musa acuminata: GSMUA_Achr4P14030_001, GSMUA_Achr4P07200_001
- Populus trichocarpa: Potri.007G028800.3, Potri.007G028800.2, Potri.007G028800.1, Potri.005G125600.1, Potri.005G125600.2
- Prunus persica: Prupe.7G151500.1.p
- Setaria italica: Seita.9G504400.1.p
- Setaria viridis: Sevir.9G508700.1.p
- Vitis vinifera: GSVIVT01019000001
Sequences
CDS Sequence:
- >XP_010905076.1|Elaeis_guineensis|C2H2|XP_010905076.1
ATGCCGGTGGAATTGGAGAATTCTTCCGTGATGACCGTCTCCAACTCGGCCTCTGGAGAGGCCAGCGTGTCCTCCTCCGGCCAGCAGCAGGCGGCGCCGCCGCCGCCCGCTCCTGCTAAGAAGAAACGCAATCTCCCCGGAATGCCAGATCCGAATGCCGAGGTGATAGCGTTGTCGCCGAAGACGCTGATGGCGACGAATAGGTTCGTGTGCGAGATTTGCAACAAAGGGTTCCAGAGGGACCAGAACCTCCAGCTGCATCGAAGGGGTCACAACCTGCCGTGGAAGCTGCGGCAGAGGACGGGGAAGGAGGTGAGGAAGCGGGTGTACGTGTGCCCGGAGCCGAGCTGCGTCCACCACGAGCCCTCGCGGGCGCTTGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGGAAGCACGGGGAGAAGAAATGGAAGTGTGACAAGTGCTCGAAGAAATATGCCGTCCAGTCCGACTGGAAGGCTCACTCCAAGACCTGCGGCACCCGCGAGTACCGCTGCGACTGCGGCACCCTCTTCTCCCGGAGGGATAGCTTTATCACGCACAGGGCATTCTGCGACGCGCTGGCGGAGGAAAGCGCCAAGGCGCAGACGAACAACACCAACGCCGCGTCGCCGACTGCGCCAGCGAACAAGAAGGCGGAGGAGGACGGAAAGGCGGCGCCGGCGCCGGCGCCGGAAAAGTCTTCGCCTCTGGCGGCGATTGTTGGGACCGAGTTGCCGCGCCAGCAGGTGGCGTCGTCGGAGCAGCAGCGAGAGCCGGAGAACCCAGCCCCTGGAATGCTTCAGTACATGCCTCCTCCCCCGCCGGCGCCGGCGCCACCGCCACCGCCATCCTCCATCACCATTGGCGGCAGCAACAGCAGCGGCACCACGAGCAGCAGTGGGGGTAATAGCAGCGGCAGCAGCACCAGCCTGTTTGCAAGCCTCTTCGCTTCGTCCGTCTCCGCCACCACCGCGGCGCAGAGCACCAACTTTTCCGACCTGATCAGCGCAATGAGCCGCACCGACCGCGCCCTCGCCGTGGAGCCCCCCTCGCTGTGTCTGTCCACCAACGGCCCCGCTGCTTCCCTATTCTCGCAGCCACCTCAGGAGCGCCGCCCGTTTCATCCGCCGCCACCGCCGTCCCCCCACATGTCCGCCACCGCCTTGCTGCAGAAGGCCGCCCAGATGGGCGCCGCCGCCACCAGTTCCTCTTCCTTCCTCCGTGGCTTCGGGCTCTCAGCCTCCTCCACTCACCAGGACGGCCTCAATGACAGTAGCCTCCATTGGCATCCCCAGCAGCAACAAGTACTGGAGTCGGAGCCCGCCCCAATTTTGTCGGCCGGTCTTGGACTTGGTCTTCCCTATGAGAGCACTGCTGCTGCGGCGGCGGCGGCGCTACCTGACTTAATGATGGGCCAGCCGCCGTTGTTCGGGCCAAAGCCGGCGACTTTGGACTTCCTGGGGCTCAGTATGGGACCGGTAGGTGGTGCGGCCACCACCGGACTATCGGCGTTGATCACTTCGATCGGAGGAGGGCTCGACATGGGTGCCGGCGCAGCTGCAGCTGGCCGTTTTGGAGGAGGGAGCTCGCCGGGGAAGGCGTGA
Protein Sequence:
- >XP_010905076.1|Elaeis_guineensis|C2H2|XP_010905076.1
MPVELENSSVMTVSNSASGEASVSSSGQQQAAPPPPAPAKKKRNLPGMPDPNAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGKEVRKRVYVCPEPSCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESAKAQTNNTNAASPTAPANKKAEEDGKAAPAPAPEKSSPLAAIVGTELPRQQVASSEQQREPENPAPGMLQYMPPPPPAPAPPPPPSSITIGGSNSSGTTSSSGGNSSGSSTSLFASLFASSVSATTAAQSTNFSDLISAMSRTDRALAVEPPSLCLSTNGPAASLFSQPPQERRPFHPPPPPSPHMSATALLQKAAQMGAAATSSSSFLRGFGLSASSTHQDGLNDSSLHWHPQQQQVLESEPAPILSAGLGLGLPYESTAAAAAAALPDLMMGQPPLFGPKPATLDFLGLSMGPVGGAATTGLSALITSIGGGLDMGAGAAAAGRFGGGSSPGKA