Information report for XP_010543545.1
Gene Details
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Functional Annotation
- Refseq: XP_010543545.1 — PREDICTED: probable lysine-specific demethylase ELF6
- Swissprot: Q6BDA0 — ELF6_ARATH; Probable lysine-specific demethylase ELF6
- TrEMBL: V4LD48 — V4LD48_EUTSA; Uncharacterized protein
- STRING: XP_010543545.1 — (Tarenaya hassleriana)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0048577 — Biological Process — negative regulation of short-day photoperiodism, flowering
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT5G04240.1
- Brassica napus: BnaA10G0285500ZS, BnaC09G0604100ZS
- Brassica oleracea: XP_013611724.1, Bo9g181310
- Brassica rapa: XP_009122624.1, XP_009122623.1, Bra009474
- Raphanus raphanistrum: RrC1477_p6
Sequences
CDS Sequence:
- >XP_010543545.1|Tarenaya_hassleriana|C2H2|XP_010543545.1
ATGGGTAATGTCGAAATACCCGATTGGCTGAAAGGCTTGCCATTGGCACCTGTGTATAGACCTACGGACACTGAATTTGCAGACCCTATTGCATATATATCGAAAATCGAAAAGGAAGCAAGTGCCATTGGTATTTGCAAGATCATTCCTCCTCATCCTAAGCCGTCAAAGAAGTATGTTTTTCATAACTTGAACAAGTCTCTTTCGAAGTGCCCGGAACTGGGTTCAAATGTCGGTGTTATGAAAACGGGTCAAGCAGATGGTGGAAATGATGGGGAGGCTAGGGCTGTATTTACCACTAGACAACAAGAGTTAGGTCAGAGCGCCAAAAGAGCGAGAGGAGGAGAGAGCAATAGTAACCCTCAATCTGGTGGTGTTAAGCAAGTGTGGCAAAGTGGGGAGGTTTATACATTAGAGCAGTTTGAATCTAAATCAAAGGCTTTCTCCCGGAGCCATTTAGGAATGATTAAGGATGTATCTCCAATAGTTATCGAGTCGTTGTTCTGGAAAGCAGCTTCGAATAAACCTATATATATAGAGTATGCAAATGACGTCCCTGGCTCGGGTTTTGGGGAGCCAGAGGGTCATTCACGGTATCTCCGACAGAGGAGGAAGAAGAGACAGAGGGGTTCCTACCAAAGGAGGAGAGAAGCTGATGTAGCAAACGAAATTGAAAATAATAGGAATGACAGTGTTTGTCAAGAACCAGCATTTAAGGATGATCAAAGATTATGTCCTGAGACAGGAAGGACTAATGTTGATTCCCCAAGTTTGTCATCTGACGAAGGTTCACATTCCTCCAGGCAAAAGAAGAACATTGATTTCACTAATGATATGGAAGGTAGTGCAGGCTGGAAGCTTTCAAACAGTTCATGGAACCTTCAGATGATTGCACGATCACCTGGTTCTATCACACGCTTCATGCCAGACGACATCCCTGGTGTTACTTCCCCCATGATTTATATCGGTATGTTGTTCAGCTGGTTTGCTTGGCATGTCGAGGATCATGAGCTCCATAGCTTGAATTTTCTTCACACTGGCTCGCCAAAGACTTGGTATGCCATCCCCGGTGATTATGCATTTGAATTTGAAGAGATTATCTGCAAACAGGCTTACGGTGGACATGTTGACCAACTAGCTGCTCTCACACAACTAGGCGAAAAGACAACTCTCATGTCTCCTGAGATGATAGTTGCGTCCGGCATTCCTTGTTGTAGGTTAATACAGAATCCTGGTGAATTTGTCGTGACTTTTCCGAGGTCTTATCATGTAGGATTCAGCCATGGTTTTAACTGCGGGGAAGCTGCAAACTTTGGAACTCCGCAGTGGCTAAACATAGCGAAGGAAGCTGCTGTGCGTCGCGCTGCTATGAATTACCTCCCCATGTTGTCCCATCAGCAGCTGCTCTATCTCTTGACCATGTCCTTTGTTTCAAGAGTGCCACGATCACTGTTGCCAGGTGCTCGTAGTTCTCGTCTCAGAGATCGCCAAAGAGAGGAGAGAGAGTTCCTTGTGAAAAAGGCTTTTGTAGAAGACATGTTGAATGAAAACAAGATTTTATCTGTTCTTATTCTAGACCCAGGTTATCGATTGGTGTCCTGGGACCCTGATTTACTTCCACGGCAAAATGCAGAGTCTCTTGCAACTGCTGCTTTAACTACTGTCACTACTACCATTTTATCGTCAGCCGTGTCAGAAGGCGGATTTGAGGGTCATTCTGAAACACAGACTAATGACAAGAAGACTACTCTATTGGAGGAATTGAGCTTGTTCATGGAGAAGCTGAGTGATGTATATGACAATGATGATGATGACGATCTTCTAAATGATTTCCAAGTTGACTCTGGAACATTGCCATGTGTAGCTTGTGGCACTCTCGGCTTCCCCTTTATGGCTGTGGTACAACCATCTGAAAAAACATTAAAAGATTTGGCTGAGGGATCAGACCTAGATGCTCAGGAAATACTGATACCAGCCCCATCAAGGTTTGAGTGTGGATGGAATACTTCCTGTAGATATTCAAGGCCTCGCATTTTCTGCCTGGAACATGCTGTCGAAGTTCAGAAGTTAGTGCGCTTAAGGGGCGGAGTGAAAGTCCTTGTAATTTGCCATAAAGACTTTCTGAAAATCAGGGCACATGCTACCGTAGTTGCAGAGGAGGTCAATGTCTCTTTTAACTATAATGACGTTCCGCTAGAGACTGCATCCCGAGAAGATTTGGGTTTAATTGATCTTGCAATCGAAGACGAGGAAAACAATGAACATGGAGAAGATTGGACCTCAAAACTTGGCATTAACCTACGGTACTGTGTTAAGGTTAGGAAGAATTCCCCTTCTAAGAAAATTCATCATGCTCTGTCTTTGGGCGGATTGTTCTCCAGTACAAGGGATAGCCAGGATTTGTCAAGCATCAAATGGATGCAGAGAAGATCGCGATCAAAAGCTAAGCCCAGTTGTACCTCCGATAACACACCTTGTGAACAGCTTGAAGTTAAAGTAGATGGAAGTTTCCGGGAGAATTTGGATTCTACTGTGAGAAGAAAAGAAGAAAAGATTATCCAGTATTCGAGAAGGAAAAAGTTGAAACCCAAACAAGATCCGGAAGTAGATTCTGCAGTTAAATCTAAAGATCTTGGTAGCACATCTGATAAACTTGATGATAGCTCGCAAAGGCAAGCATTGGCAAGTGCAAATGGTACACCTTTTATTCTATCACATAGGCAAGAACGTGCGGAAAAAGATCCCAAGGTCACTGATGAGTCTTGTTCTGCTTCTGGGGGGAATATCACAAGTAATTCTAGCATGGTCAATGAGGTCTCTGATCTCTCAACTGCTATAAATAGTGTGCAGCAAGTTTATTCCTCGACCAGCATTAACGACGGGACCGTAGAAGATTTGAAGGAAGAGTTTGGAGTGAGAAATAGAGAGAATGAAGAACTGCAGTCACAGCCAATGGAACCTACCGATGAGGAAGCCATCCCTGGTGCTTGCACAGAGATGGAGGGAGACTGGGCTGTTTGCTCATTGAAGGGTTCATCCCCAACTCCTGGACTGGGCTGTAATGGAGAAGATTCGCCTGCTCGAGTGGGATTAGAAGTTCCAGAAGGAAATAATGCCAGTCAGAAATCAAATGTTGAAAGGGTTAAAGATGACGAATCTCTGCCACATAACCACGCTATAAGAAATGATGATCGAGCTCCTTTGAATGGCTCGAAAACTTCAGAAGATGAGCTTTGCACAGAGAATTTACCTAATGTCAGTGAAGTTGCATGCCCAGAGAACACCGAGGTCATCGATACATCTAAGAGTGACTCGGTTAAGGAAGGTAAGAAGCGGAAAATTGAACCAGAGGCTGAGATGAAGAACAATCCAGAGACGAGCTCTAGCTTTATAAGGAGCCCATGTGAAGGGCTGAGGCCAAGGGTAAGGGGAGAATCAACAAGTGGAACTCCAGCTAACATAGGTGAAATGACCCGTAAAGAGAAACCCACATCAAAAAAGGTGAAGAAAACTTCAAACACTGACTCGGGTCGTGGCCAAGATAACAAAGAAGCCGTGACCAGCCACCACCATGGGTGTAACCTAGAAGGATGCAAGATGAGTTTTGAGAGGAAGGCGGATCTACAAATGCACAGGAGGAACCGTTGCACTCACGAAGGCTGCGGTAAGAAATTCCGGGCTCACAAATACTTGTTGCTTCACCAGCGTGTGCATAATGACGATAGACCATTCAAGTGCCAATGGAAAGGATGCTTGATGACGTTCAAATGGCAATGGGCGAGGACCGAGCATTTGCGTCTGCACACAGGAGAGCGTCCGTACAAATGCAAGGTCGAGGGTTGTGGACTTTCGTTCAGGTTCGTCTCAGATTACAGCCGCCATAGAAGGAAAACCGGACATTATGTGAACTGA
Protein Sequence:
- >XP_010543545.1|Tarenaya_hassleriana|C2H2|XP_010543545.1
MGNVEIPDWLKGLPLAPVYRPTDTEFADPIAYISKIEKEASAIGICKIIPPHPKPSKKYVFHNLNKSLSKCPELGSNVGVMKTGQADGGNDGEARAVFTTRQQELGQSAKRARGGESNSNPQSGGVKQVWQSGEVYTLEQFESKSKAFSRSHLGMIKDVSPIVIESLFWKAASNKPIYIEYANDVPGSGFGEPEGHSRYLRQRRKKRQRGSYQRRREADVANEIENNRNDSVCQEPAFKDDQRLCPETGRTNVDSPSLSSDEGSHSSRQKKNIDFTNDMEGSAGWKLSNSSWNLQMIARSPGSITRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFLHTGSPKTWYAIPGDYAFEFEEIICKQAYGGHVDQLAALTQLGEKTTLMSPEMIVASGIPCCRLIQNPGEFVVTFPRSYHVGFSHGFNCGEAANFGTPQWLNIAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRSLLPGARSSRLRDRQREEREFLVKKAFVEDMLNENKILSVLILDPGYRLVSWDPDLLPRQNAESLATAALTTVTTTILSSAVSEGGFEGHSETQTNDKKTTLLEELSLFMEKLSDVYDNDDDDDLLNDFQVDSGTLPCVACGTLGFPFMAVVQPSEKTLKDLAEGSDLDAQEILIPAPSRFECGWNTSCRYSRPRIFCLEHAVEVQKLVRLRGGVKVLVICHKDFLKIRAHATVVAEEVNVSFNYNDVPLETASREDLGLIDLAIEDEENNEHGEDWTSKLGINLRYCVKVRKNSPSKKIHHALSLGGLFSSTRDSQDLSSIKWMQRRSRSKAKPSCTSDNTPCEQLEVKVDGSFRENLDSTVRRKEEKIIQYSRRKKLKPKQDPEVDSAVKSKDLGSTSDKLDDSSQRQALASANGTPFILSHRQERAEKDPKVTDESCSASGGNITSNSSMVNEVSDLSTAINSVQQVYSSTSINDGTVEDLKEEFGVRNRENEELQSQPMEPTDEEAIPGACTEMEGDWAVCSLKGSSPTPGLGCNGEDSPARVGLEVPEGNNASQKSNVERVKDDESLPHNHAIRNDDRAPLNGSKTSEDELCTENLPNVSEVACPENTEVIDTSKSDSVKEGKKRKIEPEAEMKNNPETSSSFIRSPCEGLRPRVRGESTSGTPANIGEMTRKEKPTSKKVKKTSNTDSGRGQDNKEAVTSHHHGCNLEGCKMSFERKADLQMHRRNRCTHEGCGKKFRAHKYLLLHQRVHNDDRPFKCQWKGCLMTFKWQWARTEHLRLHTGERPYKCKVEGCGLSFRFVSDYSRHRRKTGHYVN