Information report for XP_009788038.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_009788038.1 — PREDICTED: dnaJ homolog subfamily C member 21
- Swissprot: Q9C911 — JJJ1_ARATH; DNAJ protein JJJ1 homolog
- TrEMBL: A0A1U7XB01 — A0A1U7XB01_NICSY; dnaJ homolog subfamily C member 21
- STRING: XP_009788038.1 — (Nicotiana sylvestris)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA03g28870
- Citrus sinensis: orange1.1g007551m
- Cucumis melo: MELO3C017222P1
- Juglans regia: WALNUT_00011068-RA
- Lactuca sativa: Lsa011097
- Manihot esculenta: Manes.06G085000.1.p
- Nicotiana benthamiana: Niben101Scf15972g02014.1
- Nicotiana tabacum: XP_016489214.1, XP_016505864.1
- Prunus mume: XP_008240022.1
- Prunus persica: Prupe.5G204600.3.p, Prupe.5G204600.2.p
- Sesamum indicum: XP_011087346.1
Sequences
CDS Sequence:
- >XP_009788038.1|Nicotiana_sylvestris|C2H2|XP_009788038.1
ATGGCGTCGTCGGAGAAAAGATGCCTCTACGAGGTCCTAGGCGTGAACCGTGACTGCACCCCCGACGAGATCCGGTCCGCCTACAGGCGGCTCGCTCTGCAACGCCACCCTGACAAGCTAGTCAAATCCGGCGTACCGGAATCCGAAGCCACAGCTGCGTTTCAGGAGCTCGTCAACGCCTACGAAGTCCTGTCCGACGCGCGGGAGCGCGCTTGGTACGACTCGCACCGCTCTCAGATACTCTTCTCGTCCAATTCCGGTCCAACGAATTCGTCTAATTCCGGTTCTGTCCCCGACTTATTCTCCTTCTTTTCCAATTCAGTGTATTCTGGTTACTCCGATACAGGCAAGGGCTTTTACAAGGTCTATGGTGATCTCTTCGAGAAAATCTACCAAAACGATTTGAATTTTGCGAGGACGCTAGGTATAGGTTTGCCAAAAGAAGCTCCTCTCATGGGAAAGTTGGACAGTCCATATGCTCAGGTGACAGCATTCTATAACTATTGGTTAGGATTTGTTACTGTGATGGATTTTTGTTGGGTAGATCAGTATGACGTGATGGCGGGACCCAATAGAAAGTCAAGGAGGGTGATGGAGGAGGAGAACAAGAAGCTGAGGAAAAAGGCACGAAGGGAATACAACGAGACTGTTAGAGGATTGGCGGAGTTTGTGAAAAAGAGAGATAAGAGGGTGATTGACATGCAGATGAAGAGGAATGAGGAAATGGAGAGGAAGAGGGAAAAGGAACGGGAGAGAAAGAAGGAGTTAGAGAGAGAGAAGGCTGAGAAAGCAAAGAAATACGTGGAGCCTGATTGGGCGAAGGCAGAGGAGTTGGAAGATGAAGAAATTGAGGAGGAATGGGATGAGGATGGGAAAAGGAAGGCAGATGGGAATGAATTGTACTGTGTGGTGTGTTCGAAGAAGTTCAAGAGCGAGAAACAGTGGAAAAATCATGAGCAATCCAAGAAGCATAAGGAGAAGGTGGCATCTTTGAGAGAAGCTTTTGATGACGAAGATGATGAATACGAAGGGTTGGTGGAGGATGGGGCAAGTGAGGAGCAAAAGGTAGCTGATGGTGATATAACAGCTGATTTATCTGCGGATGATGGAGTGGATGAGTTAGCAGAGCAATTTGAAGGTAGTACGCGAATTCAAGAAGATGAATGTGAGGATGATGAGGTTCAAAGCAGCGACGAAGATGAGACCACATCAAAGGGATTAGATGATGGGTTAAATTATCGAAGTGGCAATGATTCAAAGGGAGTAGCTGATGAACCTGGATTAGATGATGATGAAGCAAGTGTTCTTGAAGCTATGGTATCTGGCCGCAAAAGTAGGAAGAATGCAGGTCCAGGTGGCAGTCGTCAAGCTTCAGCAAAGAATGTTCAGGGTGAAAGCAGTAACGATGAAATGGACTTCATGGAATATAATAATCGTAGAAGTACTAGGAGAAATAGGGGTGGCCGGAGACAAAGAAACAGGAGACCACAAGAAGAAGAAGACGAAGAAGGTGGAGGAGGAGATGTTAGATCTTATGCAACTAAAGTTGGTATTGATACTGAGTTAGATACTGCATATAATGAGAGCTCAGCTTTCGAGGAGCCGTCATCAGAGTCTCCAGCAGAAACTGCTAATGATCACAAAGGAAGTGACGTTTCGCGAAATAGTGAAAAAGTTCCAAGCCAAGGTATGGCCAAGAAAACTACCGCAAAGAAGGAGAAGAATACCAAATCAAAAGATGCAACCAAAGGAAGGAAACATAAGGGAACATCCAAATTTTCTAGCAACTCGTGCGAGACATGTGGGGAGGAATTTGATACAAGGAATCAGTTACATAAGCATCTAGGAGCGACGGGGCATGCCAAACTAAAGTCTCGGTGA
Protein Sequence:
- >XP_009788038.1|Nicotiana_sylvestris|C2H2|XP_009788038.1
MASSEKRCLYEVLGVNRDCTPDEIRSAYRRLALQRHPDKLVKSGVPESEATAAFQELVNAYEVLSDARERAWYDSHRSQILFSSNSGPTNSSNSGSVPDLFSFFSNSVYSGYSDTGKGFYKVYGDLFEKIYQNDLNFARTLGIGLPKEAPLMGKLDSPYAQVTAFYNYWLGFVTVMDFCWVDQYDVMAGPNRKSRRVMEEENKKLRKKARREYNETVRGLAEFVKKRDKRVIDMQMKRNEEMERKREKERERKKELEREKAEKAKKYVEPDWAKAEELEDEEIEEEWDEDGKRKADGNELYCVVCSKKFKSEKQWKNHEQSKKHKEKVASLREAFDDEDDEYEGLVEDGASEEQKVADGDITADLSADDGVDELAEQFEGSTRIQEDECEDDEVQSSDEDETTSKGLDDGLNYRSGNDSKGVADEPGLDDDEASVLEAMVSGRKSRKNAGPGGSRQASAKNVQGESSNDEMDFMEYNNRRSTRRNRGGRRQRNRRPQEEEDEEGGGGDVRSYATKVGIDTELDTAYNESSAFEEPSSESPAETANDHKGSDVSRNSEKVPSQGMAKKTTAKKEKNTKSKDATKGRKHKGTSKFSSNSCETCGEEFDTRNQLHKHLGATGHAKLKSR