Information report for XP_009778699.1
Gene Details
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Functional Annotation
- Refseq: XP_009778699.1 — PREDICTED: zinc finger protein JACKDAW-like
- Refseq: XP_016477042.1 — PREDICTED: zinc finger protein JACKDAW-like
- Swissprot: Q700D2 — IDD10_ARATH; Zinc finger protein JACKDAW
- TrEMBL: A0A1S4AK15 — A0A1S4AK15_TOBAC; zinc finger protein JACKDAW-like
- TrEMBL: A0A1U7WVJ0 — A0A1U7WVJ0_NICSY; zinc finger protein JACKDAW-like
- STRING: XP_009778699.1 — (Nicotiana sylvestris)
- GO:0010075 — Biological Process — regulation of meristem growth
- GO:0045604 — Biological Process — regulation of epidermal cell differentiation
- GO:0048364 — Biological Process — root development
- GO:0051302 — Biological Process — regulation of cell division
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0042803 — Molecular Function — protein homodimerization activity
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA10g15040
- Manihot esculenta: Manes.08G005700.1.p
- Nicotiana benthamiana: Niben101Scf04953g05009.1, Niben101Scf07294g00015.1, Niben101Scf05486g00005.1, Niben101Scf06397g04009.1
- Nicotiana tabacum: XP_016477042.1, XP_016466522.1, XP_016466588.1, XP_016463819.1, XP_016463820.1, XP_016461792.1
- Petunia inflata: Peinf101Scf00463g01009.1, Peinf101Scf02156g00010.1
- Populus trichocarpa: Potri.006G129300.1
- Solanum lycopersicum: Solyc10g084180.1.1
- Solanum melongena: Sme2.5_02452.1_g00001.1
- Solanum tuberosum: PGSC0003DMP400018532, PGSC0003DMG400010478
Sequences
CDS Sequence:
- >XP_009778699.1|Nicotiana_sylvestris|C2H2|XP_009778699.1
ATGATGTCTGGAGATGTTTTTTCATTTCCTTCTTCTGTTAAAGCAGTACTACCTCAACATGAACTTCAAACAAACCCTAACCCTAGACCTAATCCTTCTTCTTCCAAGAAAAGAAGAAATCTTCCTGGAACACCAGATCCAGATGCTGAAGTTATTGCTCTTTCACCAAAGTCACTCATGGCTACAAACAGATTTTTATGTGAAATCTGCAACAAAGGTTTTCAAAGGGACCAAAATTTGCAACTTCATAGAAGAGGACACAATCTTCCATGGAAGCTAAAACAAAGAAATAAAGACGAAATAGTGAAGAAGAAAGTGTATATTTGTCCAGAAAAGACTTGTATTCACCATGATGCATCACGTGCACTTGGAGATCTCACTGGAATAAAGAAACATTTTAGCAGAAAACATGGAGAAAAGAAATGGAAGTGTGAGAAATGTTCAAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCATAGTAAAACTTGTGGAACTAGAGAGTACAAATGTGACTGTGGCACACTCTTTTCCAGAAAAGATAGTTTTATCACACACAGAGCTTTCTGTGATGCTTTAGCTGAGGAGAGTTCAAGAATCACTTCAGTTGGGGCTAACAATATGAACTTCCCAAATATTAATGACACCCTTTTGAACCAGCAGTCTAATTTGCATGGGATTTCCCAAATCGGAACATTTTATAGACCAGAATTTGGTAATGGGAATTCTCTTAATCAGCAGCAGCAGAAACCAAGATTATCACTTTGGTTAGATCAAGCTAATAATAATCCTCTTCAAATGTCTGCAAATTCAAATCTTTTCGAGTCAACCACTACAAGTGGATTTGTAGATATGATGCAAATGCCTTCTTCAAATGTCTTTGGATCATCTTCAACAGTTGCAAACTTTTCACTATCTTCATCACAAGGCACTTCAATGGCTGAAACTTTAAGTTCTTTGTATTCTGATAGTACTCAAAATAACCATTTAGCCAAATCTTCAACGCCAATGTCAGCCACTGCACTTTTACAAAAAGCTGCTCAAATGGGTTCTACAAAAAGCAACCAAAGTACTGTCTTTAGCAACAGTTTCAACTTAATGAGCTCTTCTTCTTCTTCTCCGTCAAATACACCAACCTTTAGCAGTTTGCATAGTAGTGAAACAACAGATCAAAAATTCCCCAAATTATCCCAAGATTACACAGTATCCTTGGCAGAGGGCAATGGTGGACTCATTTTGTGTACAAATTTTAGTTCGTCGGCAAATACTAAGGCAATAAATCTGGATCAGGCAATTATGCAAACAGTTGGCATGCAGACTCCAGCAGTTCCGATGAACATGCAGCAGGGAATGAATAATTGTCTAACGAGAGATTTCTTAGGCATTAGAAATGAGCCATTTTTGTCACAAGAGATGGCTAAGTTTGCTTCAATGAGTTCAGCTATGGGGTTGAGCCATTACAGTAGCAGTCACTAG
Protein Sequence:
- >XP_009778699.1|Nicotiana_sylvestris|C2H2|XP_009778699.1
MMSGDVFSFPSSVKAVLPQHELQTNPNPRPNPSSSKKRRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNKDEIVKKKVYICPEKTCIHHDASRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESSRITSVGANNMNFPNINDTLLNQQSNLHGISQIGTFYRPEFGNGNSLNQQQQKPRLSLWLDQANNNPLQMSANSNLFESTTTSGFVDMMQMPSSNVFGSSSTVANFSLSSSQGTSMAETLSSLYSDSTQNNHLAKSSTPMSATALLQKAAQMGSTKSNQSTVFSNSFNLMSSSSSSPSNTPTFSSLHSSETTDQKFPKLSQDYTVSLAEGNGGLILCTNFSSSANTKAINLDQAIMQTVGMQTPAVPMNMQQGMNNCLTRDFLGIRNEPFLSQEMAKFASMSSAMGLSHYSSSH