Information report for XP_009765922.1
Gene Details
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Functional Annotation
- Refseq: XP_009765922.1 — PREDICTED: lysine-specific demethylase SE14
- Swissprot: Q6BDA0 — ELF6_ARATH; Probable lysine-specific demethylase ELF6
- TrEMBL: A0A1U7VCW5 — A0A1U7VCW5_NICSY; lysine-specific demethylase SE14
- STRING: XP_009765922.1 — (Nicotiana sylvestris)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0048577 — Biological Process — negative regulation of short-day photoperiodism, flowering
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn204031
- Capsicum annuum: T459_14455
- Cicer arietinum: XP_004496256.1
- Nicotiana attenuata: A4A49_07168
- Nicotiana benthamiana: Niben101Scf18328g00009.1, Niben101Scf00751g06003.1
- Nicotiana tabacum: XP_016462121.1, XP_016451017.1, XP_016451016.1
- Petunia inflata: Peinf101Scf02425g00011.1
- Populus trichocarpa: Potri.010G224700.1, POPTR_010G224700v3
- Sesamum indicum: XP_011084321.1, SIN_1004762
- Solanum lycopersicum: Solyc04g028560.3
- Vitis vinifera: GSVIVT01016246001
Sequences
CDS Sequence:
- >XP_009765922.1|Nicotiana_sylvestris|C2H2|XP_009765922.1
ATGGTGATGAAGTGTGTGGATATACCAGAATGGCTTAAAAGGTTGCCCCTGGCACCTGAATTTCGACCTACTGATACTGAATTTGCTGACCCCATTGCTTATATATCCAAAATTGAGAAGGAAGCTAGTGCTTTTGGTATTTGCAAGGTGATTCCACCATTGCCTAAACCTTCAAAGAAGTATGTGGTTCATAACTTGAATAAATCTCTATCCAAGTGCCCCGAGTTGGGTTTGAATGCCAATCGTGATACTTCGTCTACAACAAGTGGTGAGGATGAGGGAAATGTTGATGGTGGAGAATTTAGGGCAGTTTTTACCACGCGGCATCAAGAATTGGGGCGTAGTGAAAAGAAGAAGATAAAAAGGGAATTTGGTTTTCAAATATTGGGAGCTCAGAAGCAAGTGTGGCAAAGTGGAGAAGTTTATACATTAGAGCAGTTTGAAGCCAAATCGAAGAATTTTGCTAGGAGTCAATTGGGCGTGGTTAAGGAGCTTTCTCCATTAGTTGTGGAGGCAATGTTTTGGAAGAGGGCTTCCGAGGACCCTATCTACGTGGAGTATGCAAATGATGTGCCCGGTTCTGCATTTGGGGATCCTGAGGGACACTTTCATTATTTTCGCAGGAGGAGAAGGAGGGGGAAGAGGACAATTCCCGATAGAAATAGGCGACGAAATTCTAGTTATAAGAATGATGGAGTAGGTACTTCTGGTAATAGTGCGGACAAAAGTCCATGTCATAGCGTAGAGACACGATCCGCTTCTTTGTTGACCCCTCCATCAAAGAAAATAACAAACTCGTCCCTTTTTAGGCCAAAAGATTGTAGTAATGCTGGTGCAATGGAAGGTAGTGCTGGTTGGAACCTTTCAAACAGTCCTTGGAATTTGCAAGTAATTGCACGGTCGCCTGGGTCACTGACTCGCTTCATGCCAGATGATATCCCCGGTGTTACTTCTCCTATGGTCTATATAGGGATGTTGTTTAGCTGGTTTGCTTGGCATGTTGAGGATCACGAGCTTCATAGTTTGAATTTTCTTCATACGGGATCCCCTAAGACTTGGTATGCTGTGCCAGGAGATTATGCATTTAATTTTGAAGAAGTCATTCGTCATCATGCTTATGGAGGAAATACTGATCGATTAGCTGCTCTTACGCTATTGGGCGAGAAGACCACTCTTTTATCACCTGAAGTTGTTGTAGCATCAGGCATCCCCTGCTGCAGATTGGTACAGAATCCTGGTGAATTTGTTGTCACTTTTCCGAGGGCCTACCATATAGGTTTCAGCCATGGCTTCAATTGTGGCGAGGCTGCCAACTTCGGTACTCCACAGTGGCTTACAGTTGCCAAAGAAGCTGCTGTTCGTCGGGCTGCCATGAACTATCTGCCTATGCTATCTCATCAGCAGTTGCTTTATCTGTTGACCATGTCTTTTGTTTCAAGTGTGCCAAGGTCCTTGCTACCTGGGGTGCGAACCTCTCGTCTGAGAGATCGTCAGAAGGAAGAAAAGGAGCTTCTGGTAAAGAAAGCCTTCCTGGAAGATATAGAAAAAGAGAATGACCTGGTAAAAGTTTTGCTTCAGAAAAGCTTTTCTGACAATGCAGTGTTGTGGGATGTGGATATGCTGCCGTCTTCAGGTAAAGAATCTGAACTGCACAAGCATGCTAGTGTGGATGCTTCTAGAGGGAATGATCAGTCTGACAATATCGATAGTCAGGATCTATTAGACCAGATGAGCTTATACATGGATAATTACAGTGACTTCTATGTGGATGATGATGTGTCATGTGACTTTGAAGTCGATTCGGGGACATTACCCTGTATAGCTTGTGGGATTCTTGGTTTTCCATTTATGGCTCTGGTGCAACCATCGAAAAAGGCTGCGGAACACCTTTTCCCAGAGGATTTTCAGAATAAACAAGATTCTGGAGCGGTGAAACATGTGGAGTCGGATTGCCATTCAGATCTTAGGGGCATGATTGAGGACTATAATAGAGTTGACAGAATGGAAAGAAATGGGGGGCATTTCCTAAACCATGATGAAGTATCTTTGTCTTCCCAGCCAAGTGAATCTGTAGTTACTCCACATGAGGGTCAAACATCACAGTCTCATAATCCATCACATACAGATAATGCAGCTCTGACTTCAAAAGTTGAGCTCGAGAAGGAATGGGATTTTTGTAGGAGTTTTGTGAGACCACGGATATTTTGCCTTGAGCATGCAATTCAGACTGAAGAACTTCTGCATGCTAAAGGTGGAGCAAATGTTCTTGTGATCTGCCATTCAGACTTTCAGAAAATCAGTTCACATGCCACAATTGTTGCAGAGGAAATTGGCACGACATTCAAATATAATGAGATTACGCTGGCTAATGCATCTCAAGGACATCTTTCGTTGATTGATCTAGCAATCGTGGATGAAGAACAAGACAAATGTACAGAAGATTGGACATTGAAATTAAATATCAATTTAAGGCACTGTGTGAAGGTGCAAAAGAATTGTCCACTTAAGAAGTTAAAACATGCATTGACTTTGGGTGGATTGTTCTCTGATTCAACTCTTAGTTCAGAATCCTTGAGTCTCAAGTGGCAGTCCAGAAAAGTACGCTCAAAGAAGAAGTCTAATAATTCAACAGAAAGTCCACCATTCGCAAATGTTCAAATAGAGAAGGTACTTGATTCAGGATCTATAGTGGGCAGGCAGAGTACCAGAAAGGGAAATATAACCATCCAGTATTCCAGGAAAAAATACAAGTCTAAGGCTTGTAGTTGTGCGGAGGTCACTAGCGCTTTTGTGGATCCTTTTAATGCTTTGACGGAGGAAGTTTTGCTTACAGATGCAAAAACATTGGGAAGTAGTACTCTCATCAGGGATGAAAATGCAGGCACGGCTTCTTCAGGGGAAAGTTGTTTTGCTGCTTCTGAGGGGAAACCAGGACTGCATCACGAACATGAGATGCTTTTGGTAAATAGAGATCAAAATGGAAATCTCCTTGAATCACAAGAAGCAGATTTACTTGTTACCTCTTCTGTAATGGTGGAATTCAGTGAGGCCCAGGCTGAAATGTGTACTACTGAGAAGTTTTCAATGGAGGAAAAAACTTGTCATACAAATTCAAACAATTGCCATGCAGAGCATAAGACCACGGCTCCAGAGATTAGTGGAGAAACTGAGGTAGCTCATGTGAATACTCCTGCATGTACAACCATACCTGTGGTTCAGAGTACTGCAAATAATGAAAATTTGAGGGAGAATCAGGATACGACAGAATCTGGCATCAGAAATAAGTCTGCTCATCTGACGGAAGCAGATTTTGAAAGAGATCATCATGGAGAGGCTGATAAAACTATTATGACCAGATCTCCCGTGCCTGTCAACTCCTCAGGATCTTGCACTGATGGTCCTTCAAGAAGTTGTGATGAGCAGATTGAGGATCAATCTCCAGAACAATCTGGCTCAGGTGACGAGGCATCTGATAATGAGACTTCGGACAACTCCGTGGAGCAAAAAATCCAAATTGATAATGCAGATCAAGGTATAGCTGTCTCTGACCATGTCACACCAATAGAAGAAGCTTCCACCTCAGCAGGAAGTCTCAAAGTGACAAGAGAGACATCGAGTCCTAAGCACTCACAGAGTGGTGATAATATCTCCGAGAGGCATAAGAAAGAGTCAAATGATGATACTTCTCCAATAGTGTCTAGGCCAATTGCAAAAAGTGGTGGCAAAAGAAGGCGTGAGCTAGAACTCCTAACATATGATGGATGTAGCATTGGTGGCTTTGTTAAAAGCCCATGTGAAGGTTTAAGGCCACGGGCTAGGAAGAATGTTCTTGGGAGCAGAGTTGATACTAAGGAACCTCTGGAGGATAAATCAATGGGGAAGAAGGTGAAGACATCTTTACAGAGGAAGGGGACTCACAGGTGTGACCTGGAAGGCTGCCGGATGAGTTTCCAAACAAAGGTAGAGCTGCAACTGCACAAACGTAATCGTTGCCCCATTGAAGGATGTGGGAAGAAATTTACATCCCACAAATATGCTCTGGTTCATCAACGCGTTCATGAAAATGATAGGCCCCTCAGATGTCCGTGGAAAGGCTGCACCATGACATTCAAGTGGGCCTGGGCAAGGACTGAACATTTGCGTGTGCATACTGGGGAGCGGCCATATAAGTGCAAGGTTGAGGGTTGTGGACTCACCTTCAGGTTTGTATCAGATTATAGTCGGCATAGACGGAAAACTGGTCATTATGTAGAAGCGGCCAACAGATGTTAG
Protein Sequence:
- >XP_009765922.1|Nicotiana_sylvestris|C2H2|XP_009765922.1
MVMKCVDIPEWLKRLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKVIPPLPKPSKKYVVHNLNKSLSKCPELGLNANRDTSSTTSGEDEGNVDGGEFRAVFTTRHQELGRSEKKKIKREFGFQILGAQKQVWQSGEVYTLEQFEAKSKNFARSQLGVVKELSPLVVEAMFWKRASEDPIYVEYANDVPGSAFGDPEGHFHYFRRRRRRGKRTIPDRNRRRNSSYKNDGVGTSGNSADKSPCHSVETRSASLLTPPSKKITNSSLFRPKDCSNAGAMEGSAGWNLSNSPWNLQVIARSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSPKTWYAVPGDYAFNFEEVIRHHAYGGNTDRLAALTLLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHIGFSHGFNCGEAANFGTPQWLTVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSSVPRSLLPGVRTSRLRDRQKEEKELLVKKAFLEDIEKENDLVKVLLQKSFSDNAVLWDVDMLPSSGKESELHKHASVDASRGNDQSDNIDSQDLLDQMSLYMDNYSDFYVDDDVSCDFEVDSGTLPCIACGILGFPFMALVQPSKKAAEHLFPEDFQNKQDSGAVKHVESDCHSDLRGMIEDYNRVDRMERNGGHFLNHDEVSLSSQPSESVVTPHEGQTSQSHNPSHTDNAALTSKVELEKEWDFCRSFVRPRIFCLEHAIQTEELLHAKGGANVLVICHSDFQKISSHATIVAEEIGTTFKYNEITLANASQGHLSLIDLAIVDEEQDKCTEDWTLKLNINLRHCVKVQKNCPLKKLKHALTLGGLFSDSTLSSESLSLKWQSRKVRSKKKSNNSTESPPFANVQIEKVLDSGSIVGRQSTRKGNITIQYSRKKYKSKACSCAEVTSAFVDPFNALTEEVLLTDAKTLGSSTLIRDENAGTASSGESCFAASEGKPGLHHEHEMLLVNRDQNGNLLESQEADLLVTSSVMVEFSEAQAEMCTTEKFSMEEKTCHTNSNNCHAEHKTTAPEISGETEVAHVNTPACTTIPVVQSTANNENLRENQDTTESGIRNKSAHLTEADFERDHHGEADKTIMTRSPVPVNSSGSCTDGPSRSCDEQIEDQSPEQSGSGDEASDNETSDNSVEQKIQIDNADQGIAVSDHVTPIEEASTSAGSLKVTRETSSPKHSQSGDNISERHKKESNDDTSPIVSRPIAKSGGKRRRELELLTYDGCSIGGFVKSPCEGLRPRARKNVLGSRVDTKEPLEDKSMGKKVKTSLQRKGTHRCDLEGCRMSFQTKVELQLHKRNRCPIEGCGKKFTSHKYALVHQRVHENDRPLRCPWKGCTMTFKWAWARTEHLRVHTGERPYKCKVEGCGLTFRFVSDYSRHRRKTGHYVEAANRC