Information report for WALNUT_00023343-RA
Gene Details
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Functional Annotation
- Refseq: XP_018812426.1 — PREDICTED: uncharacterized protein LOC108984817 isoform X1
- Refseq: XP_018812427.1 — PREDICTED: uncharacterized protein LOC108984817 isoform X1
- TrEMBL: A0A2I4DZ65 — A0A2I4DZ65_JUGRE; uncharacterized protein LOC108984817 isoform X1
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Manihot esculenta: Manes.18G066500.1.p
- Nicotiana tabacum: XP_016460963.1
- Petunia inflata: Peinf101Scf00657g05024.1
- Populus trichocarpa: Potri.002G097700.5, Potri.002G097700.3, Potri.002G097700.1, Potri.002G097700.4, Potri.002G097700.2, Potri.002G097700.6
- Prunus persica: Prupe.8G062800.1.p
- Sesamum indicum: XP_011100981.1
- Solanum lycopersicum: Solyc04g074250.1.1
- Solanum tuberosum: PGSC0003DMP400011381
- Vitis vinifera: GSVIVT01015726001
Sequences
CDS Sequence:
- >WALNUT_00023343-RA|Juglans_regia|C2H2|WALNUT_00023343-RA
ATGGCTTCCGCTTCCGTTGTGGAAAATCTCCGCCTCGAAGCCCTCCGTCTCGTCGACCTCCGTCTCCTCTCCCAACCGGAGCTCTACTCCCTCTCCCTCTGCTCCTCATCCTCCTCTTACACCTCCTTCTCCAACGACAACGACGACGTTTTGATCCCCAAAATTGACCGCTCCGTCTTCAACGAATCCGCTGGTAGCCGCAAGCAGACTTACTCTCGTCTCCGCCTTGCCCCTCGTAAGCCCCATTCCTCCTCTACCTCTGCCCCGACCCGTTCCTCCTCATCCTCCTTTTCCATTCCCCGCCAAATCCCCGAACCCCTTGACGAAGAAAACTCCCAAATCATTTCCATTCTTAAACAACTGTTCGCCGCAGAAACTCCCTCCACCGCCGATGCGGACAACCTTGTTTCTGTCCATGTAGAATTTGAAGAGTTATTGCCTGATTTATCGTGTGCGGGCTTGCAAAATGTCCCGGTTCAGGTTCTTTCTGGTGACAGTGGACTGGAGAAGCGGAAGCGGGGGCGGCCGCGGAAGGATGAGAATCGGATGATTGAGCGAAAGGTGGCACTGGAACGCAAAGCGGAGCCGAATTTTCCCGTCGATGCGGCTGCCACTGAGGGGGAAAATAAGCGAAAGCGAGGGCGACCGCGTAAGAACTTGAATCCAAAGATCGAGAGCGATCAGTCTGAGAGAAATATGGCTCTGCTGCGTGAGAATGTCGAAGAGAAGGAGGACAAGATGGTGATGGCGAGCAAAAAAGTGGATGTGACGGACGTGGCTGGGTTAGGTAATGTGGAGGATCCGTATGGCGAGGAGCTGAAGAGGAGGACGGAGGGTTTGCAGACCGAGGCGGAGTTGTTAGGGTTTTTGAGTGGGTTGAGTGGTGAGTGGTGGAAAAAGAGCAGGAAAAAGAGGATTGTGCTGGCTGGCGATTTCGGCCACGCGTTGCCCAAGGGATGGAGGCTCATGCTTTCTATCAAAAAGAGGGCCAGCCGTGTATGGTTGCATTGCCGCCGATACATAAGCCCTAATGGACGGCAGTTTGTGTCGTGCAAGGAAGTCTCTTCATACTTTCTCTCATCTTCTGGACTCCAAGATGCAAGTCAACCGATATCTGATCATACTGATGACAATTACCTGGTGGCCAGGGAAGCTGATCATGCAGACGATGTTGATATTAACCTTGAAGATGGAAAGAATGCTGATGACCTCATTAGCTTACCACCACCCATGACTTCTATATTAACTGATAATGAGGAGCATGACACCATAAAGATGGGGGAGCCAAGGATTCAAACAGGGGAACTTTTCAAATGCCACAAATGCACCATGACATTTGATGAGAAAAATGATTTGGTGCACCATCTGGTATCATCTCACAGCGATACTGCAAATAGGTGTAAATCCAGTACATCTATAAGTGATAATTTAATAATTATAGGTGAAAAATATGAATGCCAGTTCTGTCATAAAATATTTGGTGAGAGGCATCTTTACAATGGCCATATTGGCATCCATATGGGGAACTATGAGAAGAGTGTCGAGGGTTCAGGAATTATCATGCAGAAGAGCACTGATCCTACTCCAACTGGAGTTCTGCCATCAACCGCAATGGTGCATGAATCGAGGGAAATTGACTGGGCAGAAACTTTCATTATCAAATCCGGTTTTGGTTGTAAGGCTGTAAAAGCAGATATTGCCATTGAGGCTTGCAGTGACAGAGATGACCAAGCATTAATCGAGGAACATAGTGAAAAGCCGGATAAAGTTTTCAGTATAAATAATGATAAATTGGGAAAGGTAGATGTGGTTACCATTGTTGCTAATAGATGTAATGCTGGTTTGGAAAATGAAACAGTTTCTACTAAGGAGAATAAAAGTGTTTGTGTATCTTCTGATAAAACAAATGTCTTCAATTGCATTCCCTGTGGAATTAATAACTGTGTTGCAGACAATAAAGGTTCTGAAAGCTGGTTGCTTGCTTCTCCCGTAAATGAGAGAACTTTTGTTGTTGAAAACAATGTTATTAAGGTATCTTTCCCATCAGTGGAGGAGCAAAAGCTGGAGATAGGCTCTGAAAGTGGTTTGAATCATAAGAATAAAACATGTAGTGGTGAAGATATCGAGTTTAAATGTTTTGCAAGCACAGTGGAAGATATGAAAGTTGATGATGGTTATAAATCTGAGAATAGTGAGTTAGTGTCTAGTTTTGGCAATCATGACGTTGGACTCGAGGATGTTTGTGCTACTGTTGATATCTCTGGGAATACTATAATTACAGTTGGTTTTGGGAGCAATCATGCTTCACAAAATGACAAGGCTGTGACCAGCACTAAGCAAGAAGGGAGTTCAGGAAGCTGTTTAGTTACTTCATCTTGGAATCACCAATATATTGTTGAAAATAATGCAAATAAGAGTTCCTGCTGCACAGTGGAGGCAGAGGCACCCTTTCAGGGAAAATCGTTTCATCACCATGAATTTGCCCCATCTCTTAATGAGCATGGATCTCATTTTAACAATAGGATGACTGAGGTTCCTACTGGTGCAGTGGAGGAGCTTAAGCCTGATGAAGTCAGAAACTGTAAGATTGGTGAGTTAAAATTTGCTTTTGACTGTAATGAAACTGAAGTTGATGTAGATACTACCGCTTGCAGTGGGCAGGAAAGATGTTTTAAAGGCTCTTTACTTGTTTCATCTGCAGATGAGCATAGATGTGTTTTTAAAAATAATATCTGCAGTAGCACAATGGAGGAGCTCAAACAGGACATGGGTTTGTCTGAAAGTGGCTTACATAGCCAGTTTGGCTATGAACAGAACCATGATAAAATAAATAATGTGAATAAGGTTTCATGTAGCTCAATAGAGGAGGCCGAGCATAAGAAGGTTAAGAGCTCTTGGAACACTAAGGCATTCCTTGCTTTTGGCACCCGGGCAGGAACGGATACAGATGTGAGAAGCACTATGTGGGGACAAAGTTCTGAAGGATCTTCCCTTGTTCTTTCTGGGGACAAACAAACATTTTCCTCTGATAATAAGGTGACTAGTGTTTGTAGTAGCACAGTGGGGGAGCATGAAAGATGTTCTGAAAATCTTAGGGATGGTGGGTCAATGATTGATCTTGGAAATCAGTCGCAATCAAATGAGGATATCATGGCAGAACTTTTGTGGAGAACCGCAGAGCAAAATGTCGGGCAGAATGGTTTAGCCAATATTTCATCTCCACTTGTGCAATCGTCAGGATGTTTTCCAAATTTAATGTCAAGCAAGGCAAGCTCTCATCCAGAGGAAGCGAGGGTTTTGTCATATGATGCAGAGATGGATCAAGGGTTTAATTCCTCTTATTGGCTTAAAAAGGAAGCTTTGCCTTCATTGCCAAAGATAGTGAATGGGCATCCGGTCAGGACTATGTGTGTCTGGTGTGCGGAAGAGTTTTATCTTGAATCTGTCAACTCTAGGATGCAATCAGGTTCGGTGGGTTTTATGTGTGCAGCCTGCAATGCTAAATTCTCTGGGCAATTCAATGTACTGTAG
Protein Sequence:
- >WALNUT_00023343-RA|Juglans_regia|C2H2|WALNUT_00023343-RA
MASASVVENLRLEALRLVDLRLLSQPELYSLSLCSSSSSYTSFSNDNDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPHSSSTSAPTRSSSSSFSIPRQIPEPLDEENSQIISILKQLFAAETPSTADADNLVSVHVEFEELLPDLSCAGLQNVPVQVLSGDSGLEKRKRGRPRKDENRMIERKVALERKAEPNFPVDAAATEGENKRKRGRPRKNLNPKIESDQSERNMALLRENVEEKEDKMVMASKKVDVTDVAGLGNVEDPYGEELKRRTEGLQTEAELLGFLSGLSGEWWKKSRKKRIVLAGDFGHALPKGWRLMLSIKKRASRVWLHCRRYISPNGRQFVSCKEVSSYFLSSSGLQDASQPISDHTDDNYLVAREADHADDVDINLEDGKNADDLISLPPPMTSILTDNEEHDTIKMGEPRIQTGELFKCHKCTMTFDEKNDLVHHLVSSHSDTANRCKSSTSISDNLIIIGEKYECQFCHKIFGERHLYNGHIGIHMGNYEKSVEGSGIIMQKSTDPTPTGVLPSTAMVHESREIDWAETFIIKSGFGCKAVKADIAIEACSDRDDQALIEEHSEKPDKVFSINNDKLGKVDVVTIVANRCNAGLENETVSTKENKSVCVSSDKTNVFNCIPCGINNCVADNKGSESWLLASPVNERTFVVENNVIKVSFPSVEEQKLEIGSESGLNHKNKTCSGEDIEFKCFASTVEDMKVDDGYKSENSELVSSFGNHDVGLEDVCATVDISGNTIITVGFGSNHASQNDKAVTSTKQEGSSGSCLVTSSWNHQYIVENNANKSSCCTVEAEAPFQGKSFHHHEFAPSLNEHGSHFNNRMTEVPTGAVEELKPDEVRNCKIGELKFAFDCNETEVDVDTTACSGQERCFKGSLLVSSADEHRCVFKNNICSSTMEELKQDMGLSESGLHSQFGYEQNHDKINNVNKVSCSSIEEAEHKKVKSSWNTKAFLAFGTRAGTDTDVRSTMWGQSSEGSSLVLSGDKQTFSSDNKVTSVCSSTVGEHERCSENLRDGGSMIDLGNQSQSNEDIMAELLWRTAEQNVGQNGLANISSPLVQSSGCFPNLMSSKASSHPEEARVLSYDAEMDQGFNSSYWLKKEALPSLPKIVNGHPVRTMCVWCAEEFYLESVNSRMQSGSVGFMCAACNAKFSGQFNVL