Information report for Vradi05g05790.1
Gene Details
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Functional Annotation
- Refseq: XP_014501175.1 — lysine-specific demethylase JMJ705
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: A0A1S3U579 — A0A1S3U579_VIGRR; lysine-specific demethylase JMJ705
- STRING: XP_007137965.1 — (Phaseolus vulgaris)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cicer arietinum: XP_004501832.1, XP_004515844.1
- Glycine max: Glyma.04G191900.1.p, Glyma.04G191900, Glyma.04G192000.3.p, Glyma.04G192000.1.p, Glyma.04G192000, Glyma.06G173800.1.p, Glyma.06G173800, Glyma.06G174000.2.p, Glyma.06G174000.1.p, Glyma.06G174000, Glyma.04G192000.2.p
- Lotus japonicus: Lj0g3v0351959.1, Lj4g3v1389260.1
- Medicago truncatula: Medtr3g075210.1, Medtr3g075210
Sequences
CDS Sequence:
- >Vradi05g05790.1|Vigna_radiata|C2H2|Vradi05g05790.1
ATGAGAGCCACGGAGAAGAAATCAGGGATAATGGGAGGGGGTTCTGAGGGTAGTGCCGACGTTTTGCCGTGGCTGAAATCGATGCCGGTGGCACCGGAGTACCGGCCGACTGCGGCAGAGTTCCAAGATCCAATCGGCTACATATTCAAGATCGAGAAGGAAGCGTCCAAGTACGGCATCTGCAAAATCATCCCTCCCTTCCCTCCTTCTCCAAAGAAAACCGCCATCGCCAACCTCAACCGCTCACTTGCCGTTTCAGGTTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGGCCCCGCCCCGTGCAGCGCCCTGTCTGGCAGAGCGGTGACCACTATACCTTCACGGAGTTCGAGTTCAAAGCCAAGTCCTTCGAGAAAGCGTACCTCAAACGCCACACCAGAAAAGGTCCGAGTCCAGGCCCAGGTCTGACCCCACTTGAGACCGAAACGCTCTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCCAACGACATGCCGGGTTCCGCGTTCTCCCCCAAATGCCGGCACACAGGGGATCCCACTTCCCTTGCGGACACTCCTTGGAACATGCGAGCTGTTTCGCGGGCCACGGGCTCACTCTTGCGCTTCATGAAGGAGGAGATTCCCGGCGTTACTTCTCCAATGGTCTATGTTGCCATGCTCTTCAGCTGGTTCGCTTGGCATGTCGAGGACCACGACTTGCACAGCCTGAACTACCTCCACATGGGTGCCGGCAAGACCTGGTACGGCGTCCCTCGAGATGCTGCTGTCGCGTTTGAGGAGGTTGTTAGGGTTCACGGCTACGGTGGAGAAATTAATCCTCTCGTTACATTTGCTATTCTTGGTGAGAAAACCACGGTGATGTCGCCTGAAGTATTTCTCAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAACTGTGGAGAGGCAGCGAACATTGCTACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCCATTCGGAGGGCTTCGCTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCAAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGCTACAGAACAATGACCTGCTTCATATACTGGGGAAAGAATCTGCTGTAGTACTTCTACCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAATCCATCAATGTAAGCAATTCTGAGGGAATGCATTCCTCAAAAGATTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAACTTTCTATTCCGTGAAAGACAAGTTTAGTACGATGTATGAAAGGAATAGGGTTTCCTCTTTTGATGTAAATGGTAGCTTAATCTCTTCAAGTTCTAAGCCACTTCAAAGGGACACTGAGGGAGGAACTAGTAAAGAAGATGGATTGTCAGATCAGAGACTGTTTTCATGTGTCACTTGTGGAATATTGAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGATCCGGCTGCTAGATATCTCGTGTCAGCTGATTGCAGCTTCTGTAATGATTGGGTTGTTGGTTCTGGAGTATCTAACAGTAAACTTACTACTGCCCCTGAAAAAGCAATTATTCCTGTGCCAAATATGTATACAGGCAGTTTCTCTTATGGTCCTATTGGTGTTTATTGGGGTCCAAAAGGATGGATGAAAAAAAATGTCCAAGATGGTATGCAAGATGTTTCTGTTCAATCTTCTCGGTATGCTTCAAGTATTGAAAGTGAAAAGGGCAATACAGCTCTTGCACTATTGGCTTCAGCGTATGGAAATTCTTCTGACTCTGAGGAAGATCAGATTTCAGTTGATGGTCATGAAACAAATGTGCTGACCTCTGCTTCAGAAAGTTTACTTTCTCATACTCAAGATTCCCATGCTAGTCCCGTGGCTGCACTTGATAGCGGAGATAATATTACGTTGATGAGTGCCAGTTGTGAGGGTTTAATGCATCGTAGATTTGAGGGTAATTTAAGTCATCAATCTTTAGACCACTCTTTAAAGAAACAGGATTATAATATCACATCAGGGGTTACATTTGAAAATATGAAGACAGTGCCTAATTCCACCTCAAATTGTTCCCAAGATGCCAATGACGCTGAAAGGTCATTGTCTAAAATGTCTATGGTTCCCTTTGATAATAAAAATGCTTCCATGGTGTTACAGTCTGATGAAGATTCATCCAGAATGCATGTGTTCTGTCTGGAGCATGCTGCAGAAGCAGAGAAGCAACTTCGCCCAATTGGTGGAGCCCACATATTTCTCCTATGTCATCCAGACATATTAAACTGGTTAAGAAACAAGGGGACTGTGGCTATGAAAAATGAGAGTGTAGTCATGGAAGTTATGTCAGTTTATGTGCAATGCAAGAAAAGTTCATCCCCTAATGCAAAGGTCAAGTTCAACTATCCCAAGATAGAGGCTGAAGCAAAAGTGGTGGCAGAAGATTTGGGGATTGATTACACATGGAAGAGTATTGCATACAGGCATGCTTCCAAGGAGGATGAGGAGAGGATCCAGTTGGCTCTGGATAGCGAGGAAGCCATTCCTGGGAATGGTGACTGGGCTGTAAAACTAGGAATCAATCTCTTTTATAGTGCACATCTTAGTCGCTCTCCTCTTTATAGCAAGCAGATGCCTTACAATTCTGTTATATATTGTGCATTTGGTTGTAGCTCTCCAGCTAGCTCATCCGAAGAGCCAAAGGTCTATCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAACCAGGTCCATCCCCTTTTAGCGAAAAGAGATTCTGAAGATGCTGAGGATGAGAAAATCTTACTTGGGTGGATATCACCCGAGGAGAGAATTGAGAGATCAGAAAGTACCCCTAAAGGTGAAACTACTAGCAGAAAGTCAGGTAAGAAAAGGAAATCGACAGCAGAGAATGGACGAACCAGGAAAGGAAGTTATGCTAAGAAAAATGTAGTTTCATATAATTCCATTGAAGATAAACCCAACTCACAGCCAAGGAGTGTTCATAGAAGTAAGAAAGCCAGGAATGTTGGGAGAGATCGTGCTGCTTTGAAAGGGGATACTTCTGCATATAATCATAGAAAACCTATTAGCAAAGAAACAAACTTTACTGAAAGTGATGCGGTTTCTGATGATTCACTTGATGATGAAGATGATCACATGCAGCATGGGAGGAATTTTGACATTGACAATCATGTGGTTTCAGATGATACAGGGGACTGTGATTCTGATTGGCAGCAGAGGGAAGAACATAGCAGCAAGGACGATGAAGATATGGAGAGAGATGCAATTTCAGAGGATTCTGAAGGCAAGCATGACAAATTCATCAGTGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTTGTTTTCAAAAGCGGCAAAGGAGAACTCCTAAAAGCAGGCAAGCTAAGTATCTGACTGGAAAAAGTATAATATCCAACGACCAGCTAGAGCTGAAAATGCAGAAGCAGCAACGGAGGAATCCTCAAAGCAGGCAAGCCAAATACCTCGATGAAGAGGATATTGCTTCAGATGACCAATTGGAGGGCCATTATCGTAGGTATCAAAGAAGGAATCCTAAAGGCAGGCAGGCCAAATGTGTAGTAGAGGAAGATGAAATGTCTGGTGACCAATTGGAGGATCATTGTCAGAAGCTGCAAACAAGTTTCTCTAGGAAAAAGCAAAACAAAGGCATTAATAGAGAAGATAAATATGTAATGTCTGATGACCAATTGGAGGATCATTTTCCAAAGCAGCAAAGAAGAATTCCGAAGAGCAGGCAAAACAGATACCCTGATAAAGAAGTTATGGATGACTCGGCTGAAAACAATACTCGTCTGCTGCATAGAACTCCTAAAAGAAAGCAAGCTAAATGCATGGACGAAGATGATTTGAATTCAGATGATGAAATGGAAGATGATCAGAAGCTGAGGAGAACTCTTAGAAGTAAACAATCTAAACCAAAAACACTTCAACAGATGAAACAGGCCAATTCCGTCCATGCAAAAAACCAGGCATCTCGGTCCATAAAACGGGGATCTCGGGTTCTTGTGAAATCAAAGACACCTCAGCAAATAAAACCGCGGAATAAGCAATCCACTAACTCCCGAGAGTTTAGTTTACTTGTGGAAGATGAGGAAGAAGGTGGACCTAGCACCCGCCTTAGGAAGAGAGCCACAAAAGCTCAGGGGACCGAAGGAAAATTGAAAGAGAAGCAAACAAAAAGGAAGAAGGTGAAGAATGATTCAACAGCAAAGGTTTCAGTTGGTCATGTCAAAGGAAAGGATGAGGAAGCAGATTATCAGTGTGATATGGATGGGTGCAGTATGAGTTTTGGATCAAAACAGGAGCTGCTGCATCACAAGAGAAATATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACAGAAGAGTTCATGAGGACGAGAGACCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTGTGTGCAGAGCCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGCCATTCAGCGAAGAAGAGTCGTCAATAG
Protein Sequence:
- >Vradi05g05790.1|Vigna_radiata|C2H2|Vradi05g05790.1
MRATEKKSGIMGGGSEGSADVLPWLKSMPVAPEYRPTAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVSGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFTEFEFKAKSFEKAYLKRHTRKGPSPGPGLTPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHTGDPTSLADTPWNMRAVSRATGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFLSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPASISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKESAVVLLPRSSVDISVCSKLRVGSQQSINVSNSEGMHSSKDFVSDDLVFNRSHGIKQEKTFYSVKDKFSTMYERNRVSSFDVNGSLISSSSKPLQRDTEGGTSKEDGLSDQRLFSCVTCGILSFSCVAIVQPRDPAARYLVSADCSFCNDWVVGSGVSNSKLTTAPEKAIIPVPNMYTGSFSYGPIGVYWGPKGWMKKNVQDGMQDVSVQSSRYASSIESEKGNTALALLASAYGNSSDSEEDQISVDGHETNVLTSASESLLSHTQDSHASPVAALDSGDNITLMSASCEGLMHRRFEGNLSHQSLDHSLKKQDYNITSGVTFENMKTVPNSTSNCSQDANDAERSLSKMSMVPFDNKNASMVLQSDEDSSRMHVFCLEHAAEAEKQLRPIGGAHIFLLCHPDILNWLRNKGTVAMKNESVVMEVMSVYVQCKKSSSPNAKVKFNYPKIEAEAKVVAEDLGIDYTWKSIAYRHASKEDEERIQLALDSEEAIPGNGDWAVKLGINLFYSAHLSRSPLYSKQMPYNSVIYCAFGCSSPASSSEEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDAEDEKILLGWISPEERIERSESTPKGETTSRKSGKKRKSTAENGRTRKGSYAKKNVVSYNSIEDKPNSQPRSVHRSKKARNVGRDRAALKGDTSAYNHRKPISKETNFTESDAVSDDSLDDEDDHMQHGRNFDIDNHVVSDDTGDCDSDWQQREEHSSKDDEDMERDAISEDSEGKHDKFISEEDIISDDQMESCFQKRQRRTPKSRQAKYLTGKSIISNDQLELKMQKQQRRNPQSRQAKYLDEEDIASDDQLEGHYRRYQRRNPKGRQAKCVVEEDEMSGDQLEDHCQKLQTSFSRKKQNKGINREDKYVMSDDQLEDHFPKQQRRIPKSRQNRYPDKEVMDDSAENNTRLLHRTPKRKQAKCMDEDDLNSDDEMEDDQKLRRTLRSKQSKPKTLQQMKQANSVHAKNQASRSIKRGSRVLVKSKTPQQIKPRNKQSTNSREFSLLVEDEEEGGPSTRLRKRATKAQGTEGKLKEKQTKRKKVKNDSTAKVSVGHVKGKDEEADYQCDMDGCSMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ*