Information report for Traes_6AS_448C7608C.2
Gene Details
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Functional Annotation
- Refseq: XP_020181266.1 — putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic
- TrEMBL: A0A446V289 — A0A446V289_TRITD; Uncharacterized protein
- STRING: Traes_6AS_448C7608C.2 — (Triticum aestivum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0005515 — Molecular Function — protein binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi3g01483.1.p
- Hordeum vulgare: MLOC_3855.1
- Panicum virgatum: Pavir.1KG020700.1.p, Pavir.1NG010700.1.p
- Setaria viridis: Sevir.1G116900.1.p
Sequences
CDS Sequence:
- >Traes_6AS_448C7608C.2|Triticum_aestivum|C2H2|Traes_6AS_448C7608C.2
ATGAACAGGAGCGTGTGCCACCACCTGCTCGCCCAGTGCAGATCCCTGCGAGAGCTCGAGAGAATCCACGCCCGGGCCGTCACCCATGGCCTCCACCCGTGTAACCAGTCCATCTCGTGTAAGCTCTTCCGGTGCTACGCCGACTTCGGCCGCCCCGCCGAGGCGCGCCGGCTGTTCGGCGAGATCCCCTGCCCGGACCTCGTCTCCTTCACCAGCCTCATGTCGCTCCACCTCCAGCTAAACCAGCACCATGAGGCCATGTTCACGTTCTCGCGCGCCATCGCCTCCGGTCACCGCCCTGATGGCTTTGTGGTTGTCGGCGCTCTCTCGGCGTCTGGCGGGGCTGGGGATCTTTGTGCTGGTTTGGGGGTGCATGGCCTGATTTTCCGTTGCGGGTTGGGCTCAGAGTTGGTCGTCGGCAATGCTCTGGTTGATATGTATTGCCGGTGCGGGAGGTTTGAGGGCGCGCTAGGGGTGTTTGATGAAATGGCGGTGAAAGACGAGGTCACCTGGGGCAGCATGCTGCATGGGTATATGAAGTGTGTCGGTGTGGACTCAGCGTTGTCCTTCTTTGACCGGATGCCGGTGAAGAGCATGGTTTCCTGGACGGCGTTGGTGACCGGCCATGTTCAGGCCAAGCAGCCTATCCGAGCTCTAGAAATTTTTGGTAGGATGGTGCTGGAAGGTCACCGCCCCACACATGTTACAATTGTAGGTGTGCTGTCTGCTTGCGCTGACATTGGCTCTCTAGATCTTGGGCGTGTCATTCATGGGTATGGAAGTAAATTCAATATCAGCACAAATATAATTGTTAGCAATGCTCTGATGGACATGTATGCAAAGAGTGGAAGTATAGAGATGGCATTTGCCGTGTTCGAAGAAGTGCCCTTGAAGGACGCATTCACATGGACAACCATGATCTCGAGCTTCACTGTCCAGGGTGATGGGATAAAAGCTCTTGAGCTCTTTGAGGACATGCTAAGGTCTGGGATTGTTCCAAATAGTGTCACCTTTGTGTCTGTTTTGTCAGCCTGCAGCCATGCTGGGTTAATACAGCAAGGCAGAGAGTTATTTGATAAAATGCGTAGGATCTACAACATTAAACCGCAGCTTGAGCACTATGGATGCATTGTTGATTTGTTAGGACGGGGTGGGCTACTAGAGGAAGCAGAAGCCCTGATATATGATATGGATGTGGAACCTGATACTGTTATATGGAGGTCACTTCTTAGTGCATGCCTAGTTCATGGCAATGATAGATTGGCTGAGATTGCTGGGCAGGAGATTATAAAGAGAGAACCAGGGGATGATGGGGTTTATGTGCTTCTTTGGAACATATACGCCTCATCAGATAGGTGGAAACAAGCTCTGGATATAAGAAAACAAATGCTGACAAGGAAGATCTTCAAAAAACCAGGGTGTAGTTGGATTGAAGTCGATGGTGGTGTCCATGAATTCTTGATGTCTTCTGGAGATGGGATCGATGGAGATGAAAAGTCTGAAGAGGCACATGGCAAAGATATTAGACGCATCAAGTGTGAATTTTGCACTGTTGTTAGGTCCAAGATGTATCTCATACGAGCTCACATGGTAGCTCAGCACAAGGATGAGTTGGACGCATCAGAAATCTACGACTCAAATGGTGAAAAGGTTGTTTATGGGGTTGGACACACATGTGAAGAGTGTGGAGCTTGTTTCCGGAAGCCAGCTCATCTGAAGCAGCATATGCAAAGTCATTCCAAAGAGAGATCCTTCGCCTGCCCACTTGAAGACTGCCCCTTCAGCTATATAAGAAAAGATCACTTGAACCGGCATATGCTTACACATGAGGGCAAGTTGTTTACATGCCCTCTAGGAGGTTGTGGCAAGAGGTTCAGCATCAAGGCAAATATTCAAAGACATGTTAAGGAAATGCATGAGGATGAACATGAATGCAAAATCGATGACACTAAAAGCAACCAACAGGTTATTTGCCAGGAGGAGGGTTGTAAAAAGGCTTTCAAGTATCCTTCACAGCTGAAGAAACACGAGGAGTCACATGCCAAATTGGACTATGTGGAAGTAGTCTGCTGTGAGCCTGGCTGCTTGAAGACATTCACAAATGCCAAGTGCCTGAGGGCTCATAACCAGTCTTGCCATCTATATACTCACTGTGATATTTGTGGGGAGAAACACCTGAGGAAGAACATTAAAAGGCATCTACGAGCTCACGACGAAGTGCACTCTACTGAAAGGTTGAAATGCAGTTTTGATGGCTGTGAATGCTCCTTCTCCACCAAATCAAATCTAAACAAGCATATGAAGGCGTGCCACGACCAAGTCAGACCTTTTGAGTGTCGGGTCGCGGGGTGTGGCAAGACATTCCCCTACAAGCATGTCAGGGACAATCATGAGAAGTCGAGTTGTCATGTATACATAGAGGGCGACTATGAGGAGATGGACGAGCAGCTGCGCTCGCGCCGAGGAGGTGGGCGGAAGAGGTCGGCTGTGACGGTCGAGACGCTGACTCGCAAGAGGGTCACCATCCCCAGCGAGGTCTCATCGCTTGATGATGGGGCGGAGTACATGCGCTGGATGCTCTCCGACCGGGATGGTTCGAACCACGCTGAGTAG
Protein Sequence:
- >Traes_6AS_448C7608C.2|Triticum_aestivum|C2H2|Traes_6AS_448C7608C.2
MNRSVCHHLLAQCRSLRELERIHARAVTHGLHPCNQSISCKLFRCYADFGRPAEARRLFGEIPCPDLVSFTSLMSLHLQLNQHHEAMFTFSRAIASGHRPDGFVVVGALSASGGAGDLCAGLGVHGLIFRCGLGSELVVGNALVDMYCRCGRFEGALGVFDEMAVKDEVTWGSMLHGYMKCVGVDSALSFFDRMPVKSMVSWTALVTGHVQAKQPIRALEIFGRMVLEGHRPTHVTIVGVLSACADIGSLDLGRVIHGYGSKFNISTNIIVSNALMDMYAKSGSIEMAFAVFEEVPLKDAFTWTTMISSFTVQGDGIKALELFEDMLRSGIVPNSVTFVSVLSACSHAGLIQQGRELFDKMRRIYNIKPQLEHYGCIVDLLGRGGLLEEAEALIYDMDVEPDTVIWRSLLSACLVHGNDRLAEIAGQEIIKREPGDDGVYVLLWNIYASSDRWKQALDIRKQMLTRKIFKKPGCSWIEVDGGVHEFLMSSGDGIDGDEKSEEAHGKDIRRIKCEFCTVVRSKMYLIRAHMVAQHKDELDASEIYDSNGEKVVYGVGHTCEECGACFRKPAHLKQHMQSHSKERSFACPLEDCPFSYIRKDHLNRHMLTHEGKLFTCPLGGCGKRFSIKANIQRHVKEMHEDEHECKIDDTKSNQQVICQEEGCKKAFKYPSQLKKHEESHAKLDYVEVVCCEPGCLKTFTNAKCLRAHNQSCHLYTHCDICGEKHLRKNIKRHLRAHDEVHSTERLKCSFDGCECSFSTKSNLNKHMKACHDQVRPFECRVAGCGKTFPYKHVRDNHEKSSCHVYIEGDYEEMDEQLRSRRGGGRKRSAVTVETLTRKRVTIPSEVSSLDDGAEYMRWMLSDRDGSNHAE