Information report for Tp5g29430
Gene Details
Functional Annotation
- Refseq: XP_006390445.1 — DNAJ protein JJJ1 homolog
- Swissprot: Q9C911 — JJJ1_ARATH; DNAJ protein JJJ1 homolog
- TrEMBL: V4M9A4 — V4M9A4_EUTSA; Uncharacterized protein
- STRING: XP_006390445.1 — (Eutrema salsugineum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G74250.1
- Brassica napus: GSBRNA2T00092355001, GSBRNA2T00074731001, GSBRNA2T00143586001
- Brassica oleracea: XP_013620746.1, XP_013620745.1, XP_013590870.1
- Brassica rapa: XP_009128038.1
- Citrus sinensis: orange1.1g007551m
- Cucumis melo: MELO3C017222P1
- Manihot esculenta: Manes.06G085000.1.p
- Raphanus raphanistrum: RrC232_p2, RrC1089_p1
Sequences
CDS Sequence:
- >Tp5g29430|Thellungiella_parvula|C2H2|Tp5g29430
ATGGCGTCTTCGTCTCGCTCGGAGAAACGATGCCTCTACGAGGTTCTCGGTATCAGCAAGGAATCGTCGTCGGACGAAATTCGATCATCCTATCGGCGTTTGGCTTTGCAGCGTCATCCCGACAAGCTCATCAAAGCCGGCGGACTATCGGAGGTTGAAGCCACCGCCCAGTTCCAAGAGCTCGTTCACGCGTACGAAGTTTTATCCGATCCGAAGGAGCGAGCCTGGTATGATTCCCACCGATCTCAGATTCTATTCGCCGACCATGGCTCCTCCGGTGGCTCAAAATCTGGTGGAATGCCTGGCGGCTCTGTTCCGGATCTATTCGCTTTCTTCTCCACCACTGTATATTCCGGGTATTCAGACACCGGGAAGGGATTCTACAAGGTGTATTTCGATGTGTTTAACAGTGTTTACCTCAACGAGATTAAGTTCGCGAGAACGTTAGGGTTGAGAATGGACTCTGTGAGAGAGGCTCCGATCATGGGGAATCTAGAGAGTCCGTATTCTCAGGTAACGGCGTTTTATAATTACTGGTTAGGGTTTAGCACTGTTATGGATTTCTGCTGGGTGGATGAGTACGATGTGATGGCTGGACCTAACCGAAGGTGGAGGAGGAAAATGGAGGAAGAGAATAAGAAGGTGAGAAAGAAAGCTAAGAAAGAGTATAACGAGACTGTGAGAGGTTTGGCAGCTTTTGTAAAGAAAAGGGACAAGAGAGTGATTGACATGATGGTGAAGAAGAATGCTGAGATGGAGCTGAAGAAGGCGGAGGAGAGGGAGAGGAAGAAGAAGATGGACAGGGAGAGATTGGAGAGAGCTATGAATTACGAGGAGCCTGATTGGGCAAAGGCTCAGGATGGAGAGGAGGAAGAGGCAGGAGAAGAGGATGGTGATGATGATGCTAAGAGGAAGAATGAGCAGCTCTATTGCATTGTTTGTAGCAAGAAGTTCAAAAGTGAGAAGCAGTGGAAAAATCACGAGCAGTCTAAGAAGCATAAAGAGAAAGTGGCGGAGTTGAGAGAGTCATTCAGTGATGTAGAAGACGAAAAGGAAGAAGAAGAAGAAGATGAGGAAGAGATTAATGAGCCACCTGAAAATGTAGAGGAGCTCCATGAGAAGCTTCGGCAGGGGTTAAATGTCGACGACAAAGAAGAAGTGGAGGAAAAGGATGTTGAGGAGGAGGAAGCTGATGAAACTGATGATGAGTATTTTATCGCAGAGGAGGATGTGAAAGGGTCTCGTGAAAGTGAGGATGAGGATGTCGATGACGAGATGAGTCTACTCAAGAAAATGGTATCTGGGCAGAAGAATAAGCGGAAGAATGTTGTGTCAAGAAAAGAAGTTGAAGTTCAAGTCGAAATTGAGAGCGACACAGCAGAGTTGAGCGAATTTGATAACCAGAAAAGCACAGGTAGGAATAGAAAAGGTAAGAAGGAGAGAAATAAACGGAATGCTGGAAAAGACACGGCGGATGATGCCAAGAAAGTACAGATACCTGGAGATGATAGTAATACAGATGACAATGTGAATGAAACGGACCCAGCTTCCGGAGCATTTGAGGATTATCAGAAGGATGAGCCAGATCCAATGGCGTATGATAACAGGAAGAGCACAGGGAGGAGGCGCAGAAGTAAGAAAGGCAAGGATAAGAATAACCTTGGAGGGTTAATGGAGAAAAGCAGTGAAGCTGATGATAGAAATGGAGACGTGGAAGAATCTCATTCAGAAACGTTCGAGGATCGAAGTGAATATATAGAACACAAGAAGGCTCCCAGATCAAAGAAATCAACCAGAGGAATGAAATCCAAGGGCACATCGAAGAAAACCAGTAATAACGAATGCGATAGATGCGGAGAGGAGTTTGAGTCGAGGTCAAAACTATTCAAGCATATAGCTGATACTGGTCATGCGACAGTGAAATCCCGATGA
Protein Sequence:
- >Tp5g29430|Thellungiella_parvula|C2H2|Tp5g29430
MASSSRSEKRCLYEVLGISKESSSDEIRSSYRRLALQRHPDKLIKAGGLSEVEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFADHGSSGGSKSGGMPGGSVPDLFAFFSTTVYSGYSDTGKGFYKVYFDVFNSVYLNEIKFARTLGLRMDSVREAPIMGNLESPYSQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRRWRRKMEEENKKVRKKAKKEYNETVRGLAAFVKKRDKRVIDMMVKKNAEMELKKAEERERKKKMDRERLERAMNYEEPDWAKAQDGEEEEAGEEDGDDDAKRKNEQLYCIVCSKKFKSEKQWKNHEQSKKHKEKVAELRESFSDVEDEKEEEEEDEEEINEPPENVEELHEKLRQGLNVDDKEEVEEKDVEEEEADETDDEYFIAEEDVKGSRESEDEDVDDEMSLLKKMVSGQKNKRKNVVSRKEVEVQVEIESDTAELSEFDNQKSTGRNRKGKKERNKRNAGKDTADDAKKVQIPGDDSNTDDNVNETDPASGAFEDYQKDEPDPMAYDNRKSTGRRRRSKKGKDKNNLGGLMEKSSEADDRNGDVEESHSETFEDRSEYIEHKKAPRSKKSTRGMKSKGTSKKTSNNECDRCGEEFESRSKLFKHIADTGHATVKSR