Information report for Tp57577_TGAC_v2_mRNA35998
Gene Details
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Functional Annotation
- Refseq: XP_013468859.1 — plant UBX domain-containing protein 10
- Swissprot: Q9M0N1 — PUX10_ARATH; Plant UBX domain-containing protein 10
- TrEMBL: A0A2Z6NG28 — A0A2Z6NG28_TRISU; Uncharacterized protein
- STRING: XP_004495502.1 — (Cicer arietinum)
- GO:0005886 — Cellular Component — plasma membrane
- GO:0005515 — Molecular Function — protein binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_22433
- Cicer arietinum: XP_012570046.1
- Citrullus lanatus: Cla020530
- Cucumis sativus: Cucsa.308740.1
- Glycine max: Glyma.20G193000.1.p
- Gossypium arboreum: Cotton_A_06087_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A05G3556, Gh_D04G0049
- Juglans regia: WALNUT_00028337-RA, WALNUT_00025172-RA, WALNUT_00019124-RA
- Lotus japonicus: Lj5g3v1698900.1, Lj5g3v1698890.1
- Medicago truncatula: Medtr1g090703.1
- Musa acuminata: GSMUA_Achr10P06730_001
- Populus trichocarpa: Potri.008G032300.1
- Vitis vinifera: GSVIVT01031461001
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA35998|Trifolium_pratense|C2H2|Tp57577_TGAC_v2_mRNA35998
ATGGAAGCATCCCTTGAACAACACCAACTCTCTTTAGGCTCAAGGGAACACACCAATTATATCATCAAAGGGAAAGGAAGCAAATTGGTTATTAGAGGAACAGGAGCAAGAGCATGTTACTACAATGTGTATGAATGCACAACATGTAACAAAGTTTTCTCTAAATTCCAAGCACTTGGTGGCCATATAACAAGTCACAAGAAGCTTAATGCATTGGAAATTGCTCATGATGATAGTAACAACAACAGATACAAGCTTCATGAGTGCACCATTTGTGGATCTGAATACACAACTGGACAAGCCCTTGGTGGACATATGACGTGCCACCGTGCACCGGTCAGGTCCGCAACCTCCTTAAAACCAATGGCTTTGAAACCTTATAAACCTAGAAAGAAAAGGCATGTCTTGCCTTTAAATTTTGATCTCAACCTTCCAGCTGCACCTGGAGATGAGAAAAGAGAATCCAAGTTTGCCTTTGCAAGAATAAACAAGTCTTGTCTTATCTGCATTGGCCTTGGTGAATTTTCATTACCGTGGATACTTGGAAATAATGCAGCTTGTGGAGGTATACTACGTGGTTGCTTTATTTTCGCGTTCGCAGCTAGAAAGCATTATTTGTCTGTGCTTGAAGCAGAACTGTGGGGGTTTCAGTGTTTTAAAAATTGGACCGGGATAGATTTTGTTTTTTTTAAGTTAGCAGATTCCAATTTTGAAGATGAGAATGATTTCTCTTCCAAATTTGAAGAACCGCCACTTCCTCCACCACCTCCCGGATTAGCTTGGAAGCTAATCAAATTACCTATCTCCGTGATTTCCGGTAGTCTAGGGTTAGTTTCCGGTGCAATTGGTTTGGGCTTATGGGCTGCCGGTGGTGTTCTTTCGTATTCCTTGGGCTTTGTAGGCTTAGGCTCGGGAAGTTCGTCTTCATCGGCTTCGGGTTCTGCTTCGCCGTTGGTTTCTGTCTCGGCGGCGACTACTGAAGCTATGCAATTTGTTGCGGCTTTTGAGAGAGATTATGGAACAACTACGAAGCCGAATTTTGTGAGTGAGGGTTTCATGGATGCGCTTCAGAGGTCAAGGAATTCGTTTAAGCTTTTGTTTGTTTATTTGCATTCTCCTGATCATCCTGATACGCCGTTGTTTTGTCGAAGGACGCTTTGTTCGGATGTTTTTGTTGAGTTTGTGAATCAGAATTTTGTTTGCTGGGGTGGTAGTATTCGTGCTAGTGAAGGTTTTAAGATGAGTAATAGTTTGAAGGCTTCTAGGTTTCCTTTTTGTGCTCTTGTTATGGCTGCTACTAATCAGAGAATTGCCCTTCTTCAACAGGTTGAAGGTCCAAAATCCCCCGAGGAGATGTTAGTGGTACTTCAGAGAGTGCTTGAAGAAAGTTCCCCAGTTCTTGTTGCAGCAAGGCTTGATGCAGAAGAAAGGCGTAATAATGCACGCTTAAGGGAGGAGCAAGATGCTGCATACAGGGCTGCACTAGAAGCTGATCAAGCTAGGGAACGACAGAGAAGAGAAGAAGAAGAACGTTTTGCAAGGGAAGCTGCTGAAGCTGAGAGAAAGCTCAAGGAAGAAGAAGAGGCACGTGAAAGAGCAGCGCAGGAAGCTGCAGAGAAACAAGCAGCATTAGCTAAATTACGTGAAGAGAAAGCTCAGTCTCTTGGTGAAGAACCTGAAAAAGGACCTAATGTTACACAGGTTTTGGTACGGTTTCCAAATGGTGTACGCAAGGATAGGAGGTTCAACAGCACAGTGACAATTCAATCTTTGTATGACTATGTTGATTCATTGGGTTTGTTAGAAGCCGAGAGTTACAGCCTAGTCTCTAATTTTCCTCGGGTTGTTTATGGACAAGAAAAATTGACACAGTCATTAAAGGAAGCTGGATTGCATCCTCAGGCCAGCCTGTTTGTGGAGCTCAGCTCATGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA35998|Trifolium_pratense|C2H2|Tp57577_TGAC_v2_mRNA35998
MEASLEQHQLSLGSREHTNYIIKGKGSKLVIRGTGARACYYNVYECTTCNKVFSKFQALGGHITSHKKLNALEIAHDDSNNNRYKLHECTICGSEYTTGQALGGHMTCHRAPVRSATSLKPMALKPYKPRKKRHVLPLNFDLNLPAAPGDEKRESKFAFARINKSCLICIGLGEFSLPWILGNNAACGGILRGCFIFAFAARKHYLSVLEAELWGFQCFKNWTGIDFVFFKLADSNFEDENDFSSKFEEPPLPPPPPGLAWKLIKLPISVISGSLGLVSGAIGLGLWAAGGVLSYSLGFVGLGSGSSSSSASGSASPLVSVSAATTEAMQFVAAFERDYGTTTKPNFVSEGFMDALQRSRNSFKLLFVYLHSPDHPDTPLFCRRTLCSDVFVEFVNQNFVCWGGSIRASEGFKMSNSLKASRFPFCALVMAATNQRIALLQQVEGPKSPEEMLVVLQRVLEESSPVLVAARLDAEERRNNARLREEQDAAYRAALEADQARERQRREEEERFAREAAEAERKLKEEEEARERAAQEAAEKQAALAKLREEKAQSLGEEPEKGPNVTQVLVRFPNGVRKDRRFNSTVTIQSLYDYVDSLGLLEAESYSLVSNFPRVVYGQEKLTQSLKEAGLHPQASLFVELSS*