Information report for Tp57577_TGAC_v2_mRNA2483
Gene Details
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Functional Annotation
- Refseq: XP_013470290.1 — protein indeterminate-domain 5, chloroplastic
- Refseq: XP_024627898.1 — protein indeterminate-domain 5, chloroplastic
- Swissprot: Q9ZUL3 — IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
- TrEMBL: A0A072VSD2 — A0A072VSD2_MEDTR; C2H2 zinc finger protein, putative
- STRING: XP_004497164.1 — (Cicer arietinum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_08105
- Cicer arietinum: XP_004497164.1
- Glycine max: Glyma.20G109400.4.p, Glyma.20G109400.3.p, Glyma.20G109400.2.p, Glyma.20G109400.1.p, Glyma.10G280000.1.p, Glyma.07G158200.1.p
- Lotus japonicus: Lj5g3v2241010.1
- Medicago truncatula: Medtr1g112270.2, Medtr1g112270.1
- Populus trichocarpa: Potri.008G142400.5, Potri.008G142400.4, Potri.008G142400.3, Potri.008G142400.2, Potri.008G142400.1, Potri.010G099200.6, Potri.010G099200.5
- Prunus mume: XP_016648019.1, XP_008220979.1
- Prunus persica: Prupe.1G341000.2.p, Prupe.1G341000.1.p
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA2483|Trifolium_pratense|C2H2|Tp57577_TGAC_v2_mRNA2483
ATGGCTGCATCATCATCCTCAACATCACTGTTTGGATTCAGAGTCGAGGATCCGAATCCGATGAAGCAACAACATTCCTTGCCACCATCTTCATTTGCAACTCCTGCTGCTGCTGCACCATCCCAGAAGAAAAAGAGAAATCAACCTAGAAAACCAAATATGGCTGCATCATCTTCCTCAGCATCACTGTTTGGATTCAGAGACGAGGATCCGAATCCGATGAAGCAACAACATTCCTTGCCACCATCTTCATCTGCTGCTCCTGCTGTTGCTGCTGCACCATCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATTTGTGAGGTATGCAACAAAGGCTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAATTTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCTAAGAGAAAGGTTTATCTCTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGAGCACTTGGTGACCTCACTGGCATTAAGAAACATTTCTCTCGCAAACACGGCGAGAAGAAATGGAAGTGTGATAAGTGCTCCAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCATTCCAAAACTTGTGGTACTAGGGAATACAGATGTGATTGTGGCACTCTCTTCTCCAGGAGGGACAGTTTCATCACTCACAGAGCTTTCTGTGATGCATTGGCTCAAGAGGGTCCTAGACAGCCACCAATTACCCTACCTGGTGCCATTGGCTCTCACCTCTATGGAACCACAAGCAACACCATGGCTCTTAACTTATCACATGTTTCCCCACAAATGCACCACCAACAAGACCACCACAGTAACTCAGCTACCGATATCCTGCGCCTGGGCGCCTCTGCTAATCGAACGGGACAATTCGACCACCACAACATTCTCCAACCAACTTTCAGACCTAATAATTCTTTCTTCAGCAACAACAACATTCATGATCCAAACCAAAACTATGTTCCTGACCAAGGTTTAATGATGCAGCAGAATAATAACAGCAACAATAACAATCTCTTCAACATACCGAATTTCCTTTCGAGTAATAACAACAGTGCTACTACAAACACTAACAGTGGCAACAACTCATTCTCTGAACACTTGAATGTGAACAACAATGAAGGAACAAATTTCTTCACTGGTTCAGGTGGAACAACCAGTGCTCCATCATCACTCTTTAGCAATTTCCCTCAAGGAGGTGCAAATAGTAACATTAATGCTGCTGCTGCAACTTCTATAGCTTCAATGTCAGCAACTGCACTTCTTCAAAAAGCTGCTCAAATGGGTGCAACTTCAAGCAATGGAAATGGAACTACCGCAACTTCGCTTCTGAAAAGCTTCGGAAACAATACCGGTAGCAATTCAGCTTCTTCTGGTGGTGGTGCTGAACATAACAGACAACTAATGAGCGGTGGAGGTGGTAGTGGGAACTATGGTTTTGGTGGTGGGAATGAACAGAGTAATTTGCATGATTTGATGAATTCTTTTGCTGCTACTGGGAATAGTTCAATATTTGAAACTGGAGGAGGGGGTGTAGGGCTTGGAAGTGGAGGTGGAGATAGCAGGCAGATGACTCGTGACTTTTTAGGTGTTGGTCAGATTGTGAGAAGCATGAGTGGTGCTGTTGGAGGACAAAGAGAACATGCAGCTGCTTTTAACTTGCCAGGTTCTTTGGAAGGAGATCAAAGAAACATTAATGCTGCAGCAGCATTTGGAAGAGGAGGAGGTGGTGGTGGTGGTGGAGGAGCTGGAGGAAATTTTCAGTGA ATGGCTAGAAAGAAGATGAAGCTTGAATATATAACATGTAATTCAAAGAGGAGGGAAGCATTCAGAAAGAGAAAAAATGGTCTTATGAAGAAGGCCAATGAACTTAGCACCCTTTGTGGAATACAAGCATGTGTCATAGTCTATGATCAAAACAATCCTCAAGCAGAGGTTTGGCCATCAGATTCAGGAGTCAAAAGTGTGTTATCGAGGTTTAGAAGCTTGTCTGAATTTGAACGAAGCAAAAAGATGGTGGATCAGGAAGTCTTCTTAAGGGAAAGCATAGAGAAACGTCATGGCCAATTGAAGAAACAAAGGGAGGAAACTAGAAAGAAGGAATTTACTGATATAATTAATAATTACATTCATAATGGAGAATTTAATAGCAATTTAATGAGCAAAGATGATCTCGCTGTTTTCTCATCTTTTATCGATGAGAATTATCTGAAGGAAATCAATCAAAAGATGCAAGGAATGAAAATTGAAGCCCAAGATCCTTAG
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA2483|Trifolium_pratense|C2H2|Tp57577_TGAC_v2_mRNA2483
MAASSSSTSLFGFRVEDPNPMKQQHSLPPSSFATPAAAAPSQKKKRNQPRKPNMAASSSSASLFGFRDEDPNPMKQQHSLPPSSSAAPAVAAAPSQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPITLPGAIGSHLYGTTSNTMALNLSHVSPQMHHQQDHHSNSATDILRLGASANRTGQFDHHNILQPTFRPNNSFFSNNNIHDPNQNYVPDQGLMMQQNNNSNNNNLFNIPNFLSSNNNSATTNTNSGNNSFSEHLNVNNNEGTNFFTGSGGTTSAPSSLFSNFPQGGANSNINAAAATSIASMSATALLQKAAQMGATSSNGNGTTATSLLKSFGNNTGSNSASSGGGAEHNRQLMSGGGGSGNYGFGGGNEQSNLHDLMNSFAATGNSSIFETGGGGVGLGSGGGDSRQMTRDFLGVGQIVRSMSGAVGGQREHAAAFNLPGSLEGDQRNINAAAAFGRGGGGGGGGGAGGNFQ*