Information report for Tp57577_TGAC_v2_mRNA1987
Gene Details
|
|
Functional Annotation
- Refseq: XP_003591873.2 — probable lysine-specific demethylase ELF6
- Swissprot: Q6BDA0 — ELF6_ARATH; Probable lysine-specific demethylase ELF6
- TrEMBL: G7I511 — G7I511_MEDTR; Lysine-specific demethylase ELF6-like protein, putative
- STRING: GLYMA20G32160.1 — (Glycine max)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0048577 — Biological Process — negative regulation of short-day photoperiodism, flowering
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cicer arietinum: XP_004496256.1
- Citrus sinensis: orange1.1g000392m
- Glycine max: Glyma.20G181000.1.p, Glyma.20G181000, Glyma.10G209600.1.p, Glyma.10G209600, Glyma.10G209600.2.p
- Lotus japonicus: Lj0g3v0106299.1
- Medicago truncatula: Medtr1g094740.1, Medtr1g094740
- Populus trichocarpa: Potri.008G037800.1, POPTR_008G037800v3
- Prunus persica: Prupe.2G211400.1.p, PRUPE_2G211400, Prupe.2G211400.2.p
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA1987|Trifolium_pratense|C2H2|Tp57577_TGAC_v2_mRNA1987
ATGGGTAATGTTGAAATCCCTAATTGGCTTGAGGGGTTGCCACTGGCACCTGAATTTCGACCTACTGATACTGAATTTTCTGACCCAATTGCTTATATTTCAAAGATTGAGAAAGAAGCTAGTAATTTTGGGATATGCAAGATTATTCCACCTTTGCCCAAACCTTCAAAAAAATATGTTTTTTCTAATTTGAATAAGTCCCTCTTGAAGCGTCCTGAATTGGGTCTAGATAATAGTTCTTTAGGTGTTGGTAATTCTTGGAAAATGGGTGCCGATGGTAGTAACAGTGGGGTATCGCGGGCCGTGTTTACTACAAGGCAACAAGAAGTGGGGCAGAGTGTGAAAAAAACCAAAGGGGGAGTTCAGAAGCCACTGTCATGTGTTCATAAGCAAGTGTGGCAAAGTGGAGAGGTTTATACATTGGAACAGTTTGAGGCAAAATCGAAGTCTTTTGCTAGAAGCATTCTAGGTACGTCGAAGGACGTTTCTCCACTGGTTGTAGAGGCTATGTTTTGGAAGGCAGCTTCGGAGAAGCCTATATATGTGGAGTATGCCAATGACGTGCCTGGCTCTGCTTTTGGGGAATCACAGGGTCAATTTTATCATAGTCATAGAAGGCAACGAAAAAGGACTTATTATAAGAGTAGAGTAGATAGCTCCGTTTGTAAAGAAACTGAAATGGGTGGTGTAAAAGATACACAAAATGATGAGTCTAATGGCGTTACTGCCCCAAGTAATGGGGAGTCATGTTTAGAGATGTCTAAATCAGCTACGACTATGTCAACGTCTACACCAATTGAGGTGTCGCAGTCTTCTAAGGAGAAGAGTTCAGATGCCGACAATGATTTGCAAGGCACTGCTGGTTGGAAACTTTCAAATAGTCCTTGGAATTTGCAAGTTGTTGCTCGCGCTTCAGGCTCACTAACACGTTTCATGCCAGACGATATTCCCGGTGTTACTTCACCTATGATATACATTGGCATGTTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCACAGCTTGAATTTTCATCACACTGGCTCATCTAAGACTTGGTATTCTGTTCCTGGAAATTATGCCTTTGCTTTTGAGGAAGTCATCCGTACAGAGGGTTATGGTGGTGATATTGATCAATTAGCTGCTTTGAAACTTTTGGGCGAGAAAACAACTCTTTTATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTGGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGCGGGGAAGCTGCTAACTTGGCAACTCCACGATGGCTTGGCATAGCTAAAGAAGCTGCAGTGCGTAGAGCTACAATGAATCATCTTCCTATGCTTTCCCATCAGCAACTACTTTACTTGCTGACCATGTCTTTTATTTCAAGTGTACCAAGAACACTGTTACCCGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAGATTCTAGTTAAACGGGCTTTTATAGAAGATATGCTGCAGGAAAACAAGCTGCTATCCATTCTTCTCGGAAAAGAAGCTACTAAACAGGTTGTTTTATGGAATGCTGATTTACTACCAGATTCTGGCAAATATCGCCGATTGCCTGATTTAGCTTCTACTTCTGGGACCTATATGGCCGACATGTCAAATGATAATATTAGTTCTGCAGATAAGAGTAGCCATTGTCTGCTTGATGAGATGAGTTTGTACATGGAGAATCTGTCCGATTTATATGTTGGTTGTGATGAACTTCCATGTCACTTCCAAACCGATTCAGGAGCATTAGCTTGTGTGGGTTGTGGAATACTTGGTTTTCCATTTATGACACTGATACAGCCAACTGAAAAATCGATAATGGAACTTCTTCCTGATAATCATCATCTAGTTAAAGATTCCTCTCTGATCTCTGTAGCCTCCCTTCACAGTGCAGTCTCAAGGGATCTTTCTGTTTCTGAACTTGTGCTGGCAAAGGATTCGCAGAATCAGTCATTGAACAAGTGCAATAAATATTGGAACACCTCCAATAAATTTTTGAAGCCGCGAATTTTCTGCTTGGAGCATGCTGTTCAGATAGTAGAGATGTTGCAAAGCAAAGGTGGAGCCAATGTGCTTATAATTTGTCATTCAGACTATCCGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGATATACAAAGTGCTTTTGATCATAATGAGGTTCCAATGGATATTGCATCCCCAGAAAATTTGGCTCTGATAGATCTGGCAATTGATGGTGAAGAAGAACTTAATGAATTTGAAGATTGGACATCTAAACTAGGCCTTAACCTGCGATTTTGTGTCAATAATATAAACAAATCTTCATGTAAACAATTTCCCCTGACACTAATATTAGGGATGCAGTTCTATGATAAACGTCCCGGTTTATCTTTAAATTGGCATTCAAGGAAAACTCGGTCTAAAAGGTCAAACCATTTAGCTCAGGCTAAACCTGACAGCATTCAGAGAAAGACGGATGATCCATTGCATGGAAGAATAGATGGCTCCACTGCTAAAAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGTTTCTCTGAAGCAAGCACAGTCCGTGAATCCCATGAAAAGTTAAAAAATGCGTCAGGTGTTTTGAGTGGCGATCATGACACATGTGTTTCTAAAAATGAGCTTGACACAGACAATTTCAGGAGTAATTGTGCATTGTCACGTGGCTCTGCTTCTGCTGCAATGTCTCCAACGCATCCTGAAATCCAGAATGCGGAAGCTCCCATCTGTCCAAGCTTAAATACCAGTGTCTCAGAAATATGTGGCAAAGAGAGCCAAGATTGTCAGGACAAAGGATATTCTGGCTCACTTACATATGGAATAGACGGAAATGTTGATGTGTTTGGAAGCAACCAAATTACAGAAGCAATTGTCATTGATAGCAAGTGTAATAGCTTAGATTTGGATGGTGAAGGGTATCATGAACATCAGTCTGCGTGCAAAAGCAACAGCAACGGTGAAGCTGTTTTATCTACTTCATTGGTAAACCAGCCTGCTCTCGCCACTGCAGATGGAAGTTTTGAAAGTCCAAAGAATAATGACGCTGAAGAGAAAGTTAGCCATTCTATGTCATTAAAAGAGACAACTGAGGGAGAAAGTAAGCCTTTGAATGAAATGGACAGGGTACCTCTAAATGATGATAAAGCAATAAGTGAACATACTCCTATTGCAGATGTTTGTGAAATTCCAAGAGAGCTTTATGATGCTGCAGACTTCCATAATACAGTATGCTTGGATGCTACGATGCAGCAAGAACAGCAGGTTGGAAAAGGTGGTGATAAGGAAATAATTCAGTCCACTCATATTTCAGAAAAAGAATTGTGTGAATCTACAAGTGGGGAATATGCCAAGGAGTTGCACGATGAAGTGATTTTAGAGTCTGCAAAGCAGATTCAGATCCAAAATGAGAATAGAACTAATGAGGAGCCTGTTTCTAGTGATATTACAAAAGGTGTAAGTGTAACAATACCAGAAATAGGATGTTCTGAAGTTTTGGCAGAAACCTGCCCTAAAGAAGACTCCTGTATTCAATTTATTTCGAATGCAGAAAAGGAAATGGAAATCCAACCAATTTGTAGAAGTGATGAGGAACTTTCTGTATCAATCCAGGAATGTTCTAAAACCGAGAAAAAGACACGTGGTAGAGAAAACGAATATGGAAGCGAAGTTGATCTGTCACAAGATAATGGAGAGCTGGAAAGCTATGACTTGACTACTACGGTTCCCAGATCAAATGCTGAAAAGAAAAAAAAGAGGAAAATGGAACACATGGCAATGGACCAATTTGAGTTCAATGACTTTATAAGAAGTCCATGTGAGAGACTGAGGCCAAGAACTGGGAAGATTGCCTGTGCCACCACAGGCAAAACTGGAGGGGACATCAGCCAACAAAAAGAGGAAAATCCGGTAGCTAAAAGGACACGGAAGCCTCCTGAAGCTTCAGTTCCTCACAAGGATAAAAAAGCTTCAGTTCCTCACAAGGATAAAAAAGTCGATGTCAAAAAGCCGCACAAGTGTGACATTGATAATTGCCATATGAGTTTCACGACTAAGGCTGAACTACAGTTGCATAAACGTAACATGTGCCCAGAAAAAGGGTGTGGTAAGAGGAAGTTCCGTTCCCACAAATACACACTGATTCACCAGCGCGTTCATGAGGATGATAGGCCCTTTGAATGTCCATGGAAAGGCTGTTCCAAGTGTTTCAAGTGGGCATGGGCAATGACAGAGCATATAAGGGTGCATACTGGGGAGAAGCCTTATCAATGCAAGGTGGAGGGATGCGACCTTTCTTTCAGATTTATATCAGATTTTAGCAGGCACAGGCGGAAAACAGGACACTATGTGTAA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA1987|Trifolium_pratense|C2H2|Tp57577_TGAC_v2_mRNA1987
MGNVEIPNWLEGLPLAPEFRPTDTEFSDPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGLDNSSLGVGNSWKMGADGSNSGVSRAVFTTRQQEVGQSVKKTKGGVQKPLSCVHKQVWQSGEVYTLEQFEAKSKSFARSILGTSKDVSPLVVEAMFWKAASEKPIYVEYANDVPGSAFGESQGQFYHSHRRQRKRTYYKSRVDSSVCKETEMGGVKDTQNDESNGVTAPSNGESCLEMSKSATTMSTSTPIEVSQSSKEKSSDADNDLQGTAGWKLSNSPWNLQVVARASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFHHTGSSKTWYSVPGNYAFAFEEVIRTEGYGGDIDQLAALKLLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANLATPRWLGIAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREILVKRAFIEDMLQENKLLSILLGKEATKQVVLWNADLLPDSGKYRRLPDLASTSGTYMADMSNDNISSADKSSHCLLDEMSLYMENLSDLYVGCDELPCHFQTDSGALACVGCGILGFPFMTLIQPTEKSIMELLPDNHHLVKDSSLISVASLHSAVSRDLSVSELVLAKDSQNQSLNKCNKYWNTSNKFLKPRIFCLEHAVQIVEMLQSKGGANVLIICHSDYPKIKAHARAVAEDIQSAFDHNEVPMDIASPENLALIDLAIDGEEELNEFEDWTSKLGLNLRFCVNNINKSSCKQFPLTLILGMQFYDKRPGLSLNWHSRKTRSKRSNHLAQAKPDSIQRKTDDPLHGRIDGSTAKKKLIQYSRRKFKSKQSCFSEASTVRESHEKLKNASGVLSGDHDTCVSKNELDTDNFRSNCALSRGSASAAMSPTHPEIQNAEAPICPSLNTSVSEICGKESQDCQDKGYSGSLTYGIDGNVDVFGSNQITEAIVIDSKCNSLDLDGEGYHEHQSACKSNSNGEAVLSTSLVNQPALATADGSFESPKNNDAEEKVSHSMSLKETTEGESKPLNEMDRVPLNDDKAISEHTPIADVCEIPRELYDAADFHNTVCLDATMQQEQQVGKGGDKEIIQSTHISEKELCESTSGEYAKELHDEVILESAKQIQIQNENRTNEEPVSSDITKGVSVTIPEIGCSEVLAETCPKEDSCIQFISNAEKEMEIQPICRSDEELSVSIQECSKTEKKTRGRENEYGSEVDLSQDNGELESYDLTTTVPRSNAEKKKKRKMEHMAMDQFEFNDFIRSPCERLRPRTGKIACATTGKTGGDISQQKEENPVAKRTRKPPEASVPHKDKKASVPHKDKKVDVKKPHKCDIDNCHMSFTTKAELQLHKRNMCPEKGCGKRKFRSHKYTLIHQRVHEDDRPFECPWKGCSKCFKWAWAMTEHIRVHTGEKPYQCKVEGCDLSFRFISDFSRHRRKTGHYV*