Information report for Tp57577_TGAC_v2_mRNA1659
Gene Details
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Functional Annotation
- GO:0006508 — Biological Process — proteolysis
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0008234 — Molecular Function — cysteine-type peptidase activity
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_10641
- Cicer arietinum: XP_004494507.1
- Citrullus lanatus: Cla005144
- Glycine max: Glyma.19G225400.3.p, Glyma.19G225400.2.p, Glyma.19G225400.1.p, Glyma.03G228100.1.p
- Lotus japonicus: Lj1g3v4807560.1, Lj0g3v0130119.1
- Manihot esculenta: Manes.08G107500.1.p
- Medicago truncatula: Medtr7g111520.1
- Nicotiana tabacum: XP_016499515.1
- Salvia miltiorrhiza: SMil_00001908-RA_Salv
- Vitis vinifera: GSVIVT01031331001
- Ziziphus jujuba: XP_015874789.1, XP_015874788.1, XP_015874787.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA1659|Trifolium_pratense|C2H2|Tp57577_TGAC_v2_mRNA1659
ATGGATTTCTCTGATTTCCTTTGTATTGTGTCATCTTCAAGATCCTTTTCTATTATGCTTTGTACCTTCTCTATCATCCTTCTCTATCCAACCTTCAGTGAAGGCTCAGCTGTTTCTCCAAAACCATTTGAATTCAATGAAACAATTCCAACCTTCTTCAGTGAAGCCTCAGATAAACTACTCAACCAGCGTGAGATGATTAAACGGAGAGAAATCTTCAAGAAGAATCTTCTCTACATTCAAAAGTTCAATAGTCAAGGCAACAACACTTACCGTCTAGCAATAAATAAATTTGCAGATATGAACAACGAAGACATGTCAGTTTGTGAACAAGAAGAGCCCAGTGGTTTGTTGGCATCTGAGAAAATTGTTTCGTTTAACATTTCTGAAGAAGATGTACCAAATTCCTTTGATTGGAGAGAACATAATGCGGTTTCTCCAGTCAGAGACCAAGGAACATGTGGTAATAATCTTGATTTTTTATACATTGTTTTTGAATGGTTCTTGTTGGGCCTTTGTTGCAACAGTGCAATGGAAAGTCTTTTTTATATAAAAGGTGTTTTTACTGAAATGACACTATTATCTCCACAACAATTGATTGATTGTGACACACAAAGCAATGAGTGTTATGGGGGTCTAGCTCAAAAGGCATTTCGATATGTAAGCCAGGAAGGTATTGCTACCGAGGATGACTTTCCTTACGAAGGAGTAAAACAATCCTGTGATCCAATAGAAGACGTCGATAAACTATACATTGATGGCTATACTACACTAGGTACTGATGAATGGTCTTTAAGAACAGCTGTCTCACGCCAACCAGTCGCTGCTTCCATTCGTATTAGTGAGGACTTTAGGTATTACGACAATGGGATTTACCAAGGAGCTTGTGGTAACCAAGGGCATGCAGTATTAATAGTGGGATATGGTGGTGAAATTGATGAAGAAAAATACTGGATTGTGATGCGTTTATGCTTAACAGCCGAAAAGGAACACATTTTAACAATTAAAAACCCTAAAAAAAAAATATTAAAAAAATCAGCATCTTCATCATATCAAATATCAAACCTCTGTCCTCGTCGTTTTGGAGTCGCACTGAACTCAACGCAGGCGAAGTCGTCGGCCGCCACAATCAGTCAACACAAAATGGATTATCGATGGACCAAAGGTAAGAATGAATCTGGTGGTCGTCACAGGAAGCAATTCAAAAAGGATCGGGTTTATGAAGAATCTCTTATTGATGATTTGTCTGATGATTTTCGCTTGCCGAGAAATCAAAGGCCAACTGAAAATGTTGATTTGGATAATGTTGAACAAGCTTCTCTAGATACACAAATAACTTCATCTAATATTGGTTTTAAGCTTCTTCAAAAGATGGGTTGGAAAGGAAAGGGTCTTGGCAAAGATGAACAAGGAATAGTGGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGGTTGGTAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATGTCCAGCGCAAAAAACTCGATATTGAGTTGGAGGAGACAGAAGAAAATGTCAGGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAGATCCGGAAGGTGTTTTATTGTGAGCTCTGCAACAAGCAATACAAATTGGCAATGGAGTTTGAAGCACACTTGAGCTCTTATGATCACAATCACCGGAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGCAGTAGCCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAAAGAATTGGCCAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAGCAAGAGTCTGGATCAACACCGGTTTCAGCTTCAGCTTCCTCCGAATCTAGGACTGCTACTGCACTAACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGGTTCTCTGCTAAAGGCACTGCTTTCAAGAGTACGGTTGGTTCAAAGAAGCCAAATGTTTCAAAGAAGCCAAATGTTCCGGTGGCCTCTATATTTGGCAACGATAGCGATGAAGAGTAA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA1659|Trifolium_pratense|C2H2|Tp57577_TGAC_v2_mRNA1659
MDFSDFLCIVSSSRSFSIMLCTFSIILLYPTFSEGSAVSPKPFEFNETIPTFFSEASDKLLNQREMIKRREIFKKNLLYIQKFNSQGNNTYRLAINKFADMNNEDMSVCEQEEPSGLLASEKIVSFNISEEDVPNSFDWREHNAVSPVRDQGTCGNNLDFLYIVFEWFLLGLCCNSAMESLFYIKGVFTEMTLLSPQQLIDCDTQSNECYGGLAQKAFRYVSQEGIATEDDFPYEGVKQSCDPIEDVDKLYIDGYTTLGTDEWSLRTAVSRQPVAASIRISEDFRYYDNGIYQGACGNQGHAVLIVGYGGEIDEEKYWIVMRLCLTAEKEHILTIKNPKKKILKKSASSSYQISNLCPRRFGVALNSTQAKSSAATISQHKMDYRWTKGKNESGGRHRKQFKKDRVYEESLIDDLSDDFRLPRNQRPTENVDLDNVEQASLDTQITSSNIGFKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPRLGVGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEKELAKFAQIADAQKQQRLQLQQESGSTPVSASASSESRTATALTDQEQRNTLKFGFSAKGTAFKSTVGSKKPNVSKKPNVPVASIFGNDSDEE*