Information report for Tp57577_TGAC_v2_mRNA10143
Gene Details
|
|
Functional Annotation
- Refseq: XP_013469433.1 — protein indeterminate-domain 4, chloroplastic isoform X1
- Refseq: XP_024640939.1 — protein indeterminate-domain 4, chloroplastic isoform X1
- STRING: XP_004496222.1 — (Cicer arietinum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_37122
- Cicer arietinum: XP_004496223.1, XP_004496222.1
- Glycine max: Glyma.07G158000.1.p, Glyma.20G005800.1.p, Glyma.10G206600.2.p, Glyma.10G206600.1.p, Glyma.20G184000.4.p, Glyma.20G184000.3.p, Glyma.20G184000.2.p, Glyma.20G184000.1.p
- Lotus japonicus: Lj5g3v1793480.3, Lj5g3v1793480.2, Lj5g3v1793480.1
- Medicago truncatula: Medtr1g094115.2, Medtr1g094115.1
- Ziziphus jujuba: XP_015894322.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA10143|Trifolium_pratense|C2H2|Tp57577_TGAC_v2_mRNA10143
ATGGCGGCTGCTTCATCATCTACATCATTCTTTGGAATTAGAGAAGAAAATCAAAGTCAGATAACAACTTCTTCAGATCCTTCATCCACAATTCCTCCAAAGAAAAGAAGAAATCAACCAGGAACACCAAAGCCAGATGCAGAAGTGATAGCACTATCTCCCAAGACACTAATGGCAACAAATAGATTTATATGTGAGGTTTGCAATAAAGGGTTTCAAAGGGAACAAAATCTTCAACTTCATAGAAGAGGACACAATCTACCTTGGAAGTTAAAGCAAAAGTCTAACAAAGATCCAAAGAGAAAGGTTTATTTATGTCCTGAACCCACATGTGTTCATCATGATCCTTCAAGAGCTTTAGGAGACCTAACTGGGATTAAGAAGCATTACTCTCGTAAGCATGGTGAGAAGAAATGGAAATGTGAAAAATGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATTACTCATAGAGCATTTTGTGATGCACTAGCACAAGAGAATGCATTAAGACACCCTAACCCTTTTGGGAGTACTCATCATTTGTATTCCACAACAAACACAAGCCATCACATGAATTTAGGCCAAATTTCTCATCAATTACAAAATCATCAAAACCAAACTAACAACAACATTTTGCGCCTCGGATCATCATCATCGGCGCCAAAATTTGAACAACAATTAATCACATCACAACAACCTTTGAATCATCACTCTTCATTTGCTACATTCTTCATGAGTGATATTCCAAATCAATCATCATCATTTGAAGAACACCAATTTACAAACAAACAACTTCATGGTTTAATGCAACTTCCTAATCTTCAAGGAAACAATACAAACAATAATGTTTTCAACCTCATGAATAATATTCAAGATCATCAACAATTCAACAACCCTCTAATTAATGATCATCATCATCAATCAATGTTTGATCAAAACATGTCTAGTGATCCTCACATGTCAGCTACTACATTGCTTCAAAAAGCTTCTCAAATTGGTTCAACAAATTCAACAAACAACAAAGGTAACACTAACATTAACACCTCTTTTGGAAATAGAAGTTCAAGTATGGGAAATGATGATGATGACAACAATGATGAACTTCATGGATTGATAAACTCTATTGCAAATGGAAACACATCATCATCCATATTTGGTGGATCAGATAAGTTAACTTTAGATTTTCTTGGTGTTGGTGCAATGGTTAGAAACATGAATAGTGGTGCTGGATTTTCACAACATGCTATGAATACTACTAGTATGGCTTCTTTGAATCATGACCTAAAATCAGTTCAGTCAAGTTCTGTTGTCTGGAATTCAATAATAAAGGCAAGAAACGCTCTGCGCAGTGGCTATGAATATAGACTGGGAAATGGTTCTTCTTCCTTCTGGTATGAGCACTGGTCGAATCATGGAAGATTGTGTGATCAAGTTTTGTATGTTGACATTCATGACATCCAATTAACAGTAGCTGATGTGGCTCAACAAGGTTCATGGAATCTATCACAGTTATACACTCAACTTCCCCCAAATATCTTGGAGGCTATCTCAAAAATTTCTGTTTGCCTACATGAGAACATTCCCGATGGTTATACTTGGAAGGGAAATTTGGATGGTATCTATTCAGCGAAAGCAGGATATTCTTGGGTCAAAAAATCAAACTCAATGGCCGGGATTGATGAGTTACCGTCTTGGAAGTGGCTTTGGAGGATTCCAGCACCAGAAAAATTTAAATTCTTTTGTTGGACAGCTTGTCATAATTCTCTCCCCACAAGAACAATGTTGCACAAGCGAGGTAGTATGAAAATTGCTCTTTTCCCCTACCCCCATTGCTCACAGCCCTCTCTCCCTAAAATTTCAAAAATACTCTTAATAATACATACCTTAAGACATAAACTCGTGGATACAATTATGGGAAGATATTTTCTGATAGATATCTATGGTGTGACTTGTGCAATTACCGATGCCAAACCCGATGAAGCTGAAGTTGATCCCAAACTGGTCGAGCAATGGAAGAATGCCAATAAGGTTGATTTTCTTCGCCTTCAATTCTTCAAGGAGTTTGTGATACTCGTTGATTTGTGCCTTGATTTCCTTGTTCCCCGTCATTTACCACCGTCGGAGATAGTTTCCACCAACAAACTTTTGTTTGGTAGCATCCTCAACAGTGTATTTGTTGTTCATGTTATCCCAAATTTCTTTCGCAACCTTTTTGGGATCAACTTCAACTTCATAGGGTTCAGCAGCGGTTTGACATTGGGAAGGCCAGACTTGGATTCACGTAATTCTCTGGAAGCTAGCCCATGGATTATGAAGTTCCCTCTTGCCTTGGTCACTCACATACAATATTATACATTTTACACCGAGTCTTGTTATTACATCAAGAATAGGTAA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA10143|Trifolium_pratense|C2H2|Tp57577_TGAC_v2_mRNA10143
MAAASSSTSFFGIREENQSQITTSSDPSSTIPPKKRRNQPGTPKPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKDPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQENALRHPNPFGSTHHLYSTTNTSHHMNLGQISHQLQNHQNQTNNNILRLGSSSSAPKFEQQLITSQQPLNHHSSFATFFMSDIPNQSSSFEEHQFTNKQLHGLMQLPNLQGNNTNNNVFNLMNNIQDHQQFNNPLINDHHHQSMFDQNMSSDPHMSATTLLQKASQIGSTNSTNNKGNTNINTSFGNRSSSMGNDDDDNNDELHGLINSIANGNTSSSIFGGSDKLTLDFLGVGAMVRNMNSGAGFSQHAMNTTSMASLNHDLKSVQSSSVVWNSIIKARNALRSGYEYRLGNGSSSFWYEHWSNHGRLCDQVLYVDIHDIQLTVADVAQQGSWNLSQLYTQLPPNILEAISKISVCLHENIPDGYTWKGNLDGIYSAKAGYSWVKKSNSMAGIDELPSWKWLWRIPAPEKFKFFCWTACHNSLPTRTMLHKRGSMKIALFPYPHCSQPSLPKISKILLIIHTLRHKLVDTIMGRYFLIDIYGVTCAITDAKPDEAEVDPKLVEQWKNANKVDFLRLQFFKEFVILVDLCLDFLVPRHLPPSEIVSTNKLLFGSILNSVFVVHVIPNFFRNLFGINFNFIGFSSGLTLGRPDLDSRNSLEASPWIMKFPLALVTHIQYYTFYTESCYYIKNR*