Information report for Tp2g13380
Gene Details
Functional Annotation
- Refseq: XP_009114218.1 — PREDICTED: protein SHOOT GRAVITROPISM 5-like
- Refseq: XP_013713043.1 — protein SHOOT GRAVITROPISM 5
- Swissprot: F4IPE3 — IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
- TrEMBL: A0A3P5YCK9 — A0A3P5YCK9_BRACM; Uncharacterized protein
- TrEMBL: M4DLQ1 — M4DLQ1_BRARP; Uncharacterized protein
- STRING: Bostr.0556s0022.1.p — (Boechera stricta)
- GO:0009590 — Biological Process — detection of gravity
- GO:0009959 — Biological Process — negative gravitropism
- GO:0009965 — Biological Process — leaf morphogenesis
- GO:0010031 — Biological Process — circumnutation
- GO:0010601 — Biological Process — positive regulation of auxin biosynthetic process
- GO:0048444 — Biological Process — floral organ morphogenesis
- GO:2000012 — Biological Process — regulation of auxin polar transport
- GO:2000904 — Biological Process — regulation of starch metabolic process
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brassica napus: GSBRNA2T00117744001, BnaA09G0219500ZS, GSBRNA2T00090106001, BnaC09G0255600ZS, GSBRNA2T00030882001, BnaA02G0319600ZS, GSBRNA2T00040747001, GSBRNA2T00001830001, BnaC02G0431100ZS, GSBRNA2T00028157001, BnaC07G0274600ZS
- Brassica oleracea: XP_013607262.1, Bo9g070370
- Brassica rapa: XP_009114218.1, Bra017432, XP_009129183.1, Bra026624, XP_009101285.1, Bra024841, XP_009129184.1
Sequences
CDS Sequence:
- >Tp2g13380|Thellungiella_parvula|C2H2|Tp2g13380
ATGTTGGATGCTGCTGTTTCCAACAAGAACACTAGTAACACATGTTGTGTGGTCTCTTCTTCTTCTGATCCTTTCCTCTCTTCTTCTGAAACTGGGGTCACTACCACAAACACATCCACTCAGAAGAGGAAAAGAAGACCTGCAGGTACACCAGATCCAGATGCAGAAGTTGTGTCTTTATCACCAAGAACTCTTCTTGAGTCAGACAGATACATATGTGAGATCTGTAACCAAGGGTTCCAAAGAGATCAAAATCTCCAGATGCATCGAAGACGTCACAAGGTTCCATGGAAGCTTCTGAAGAGAGACAACAACATAGAGGTGAAGAAACGAGTCTACGTTTGCCCTGAACCCACTTGTCTTCACCATGATCCTTGTCATGCTCTTGGAGATCTTGTCGGAATCAAAAAACATTTCAGACGAAAACACAGTAACCACAAGCAATGGGTTTGTGAGAGATGCTCTAAAGGTTATGCTGTTCAATCAGATTACAAGGCTCATCTCAAAACTTGTGGCACTAGAGGCCATTCTTGTGACTGTGGTCGCGTCTTCTCCAGGGTGGAGAGTTTTATTGAACATCAAGATAACTGCTCCGTACGAAAAGTTCACCGTGAACCACCGCCACCGCCACAACCCACGGTCACTGTCCCGGCCTGCTCCTCTAGAACCGCCTCAACCGCAAGCACTCCCTCTAGCGAAACGAATTACGGTGGTACGGTTGCGGTTGCGACTCCTCTACCTCTAGAAGGGCGTCCAATTCATATGACAAACCCACCTTCAATTCTCACTCACTCATCAAACAATCTCAACCTCGAACTAGAGCTTCTTCCACTAAGGCCGAACCAAAACCCTAATCAAGAAAACCAACAACAAAAAGTAAAGGAACCATCTCATCATCATAATCATCATGATACCACAAACTTAAACCTCTCCATTGCACCATCATCATCATCATTTCATCACTACAACAACTTTGACCGTATAAAAGAAATAATGGCGAGTGAACAGATCATGAAGATAGCAATGAAGGAGAAAGCTTACGCAGAGGAAGCTAAAAGAGAAGCGAAGAGACAACGAGAGATGGCAGAAAACGAATTTGTGAATGCTAAGAAGATAAGGCAACAAGCACAAGCTGAGCTTGAGAGAGCTAAGCTGTTAAAGGAACAATCTATGAAAAAGATAAGCTCGACGATTATGCAAGTTACTTGTCAAACTTGTAAAGGACAGTTTCAAGCGGTTGCAGTTTCGGCGGCTGCGGCGGACGAGACATCTCTTGTGGTGAGTTACATGTCGTCAGCGAATACTGACGGAGAGGCATCATAG
Protein Sequence:
- >Tp2g13380|Thellungiella_parvula|C2H2|Tp2g13380
MLDAAVSNKNTSNTCCVVSSSSDPFLSSSETGVTTTNTSTQKRKRRPAGTPDPDAEVVSLSPRTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLLKRDNNIEVKKRVYVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDNCSVRKVHREPPPPPQPTVTVPACSSRTASTASTPSSETNYGGTVAVATPLPLEGRPIHMTNPPSILTHSSNNLNLELELLPLRPNQNPNQENQQQKVKEPSHHHNHHDTTNLNLSIAPSSSSFHHYNNFDRIKEIMASEQIMKIAMKEKAYAEEAKREAKRQREMAENEFVNAKKIRQQAQAELERAKLLKEQSMKKISSTIMQVTCQTCKGQFQAVAVSAAAADETSLVVSYMSSANTDGEAS