Information report for Thhalv10016259m
Gene Details
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Functional Annotation
- Refseq: XP_006410825.2 — polyadenylation and cleavage factor homolog 4
- TrEMBL: V4MI71 — V4MI71_EUTSA; Uncharacterized protein
- STRING: XP_006410825.1 — (Eutrema salsugineum)
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Artemisia annua: Aan015184
- Brassica oleracea: XP_013623940.1
- Juglans regia: Jr04_14430, Jr04_14440
- Lactuca sativa: Lsa010343, Lsa014526
- Malus domestica: MDP0000233616
- Musa acuminata: GSMUA_Achr11P26100_001
- Panicum virgatum: Pavir.2NG262600.1.p
- Setaria italica: Seita.2G131900.1.p
- Solanum lycopersicum: Solyc09g009120.2.1
Sequences
CDS Sequence:
- >Thhalv10016259m|Eutrema_salsugineum|C2H2|Thhalv10016259m
ATGCATTCTAACATGAGGCATCTCTTTGGAACCTGGAAAGGAGTCTTTCATCCGCAAACACTTCAGCTTATTGAGAAAGAACTTGGCTTTAATGCTAGAAGTGATGGCTCAGCAGCTGCTGTTACCACAGGCAGAGCTGATCCGCAATCTCAGCGCCCACCACATAGCATCCATGTGAATCCTAAGTATTTAGAAAGGCAACGCCTTCAACAGTCGGGACGGACAAAAGTAATGGTTACTGATGTGCCGGAGATCTCCAATTTGACTAGGGATTCAGATAGACTGGAGAGAGTTTCAAGCATATCATCTGGAGGCTCGTGGGCAGGTCCAGCTAAAGTAAATACCATTCGACGTCCTCAAAGAGACTCACTTAGTGAACCCCTCTATGAGAAAGATGTCGCGTCAATAGCAGGGGAATATGATTATGCTTCTGATCTACCGCATAATTCTAGATCCGTGATCAAGAAAGTTGGTTCAAGGGTTACTGATGACGGGTGTGAGAAGCAATGGTACGAAGATATGAGCAGGGGTCCTGATCTGATTTCTGACCAGAGGGATGAGTTACATACCAAAAGCAGAATTTCCGACTACGCTACTGCGAGACTAGAAAATTCGGAATCAAGTGGTCCCAGTAGAAATATAGGTGTGCCTTATGATAGTTGGAAAAACTCTGAGGAAGAAGAGTTTATGTGGGACCTGCACTCAAGGTTATCCGAAACAGATGTAGCCACTATCAACCCAAAGAATGAGCTTCAGGCACCAGATGAATCAGAGAGACTGGAATCTGAAAATCACCTCTTAAAACGACCAAGGTTTCCAGCTCTCGACTCAAGGTTTGATCCGGCGACCTCGATAAATTCATATTCCTGCGAGCAAAAAGATCCAAATGTTTTTGGCCGCTGGACGTCTTCTCCTAGGTCTTTGCATGATTCAGAAGTTTTTCCTTCCATTGGTACAACCTCTAATGCAGCTAGAAAGGGAATTCAGCCTCAATCTAGGGTTGCCAGCTCTGGAATTTTGCCAGGAACTGTGTCAGATAGACAATCCCCTTTACATGATTCAACTTCGAAACAGAATGTGACTAAGCAAGATTGTAGAAGAGCTCACTCCCTCCCTCAACGTGATCCTAGGGCTTCCCGGTTTCCTGCAAAGTCTCAAAGTGTCCCCAGGGATGACTCTGGACGGCCCCTATCTTCAAGTACTTCAAGTAGTCAGTTGAAAAACACAAATACGCTTCAACTACCTGATGCATCTCAAGTGGAAAAGTTTGACTCTAAGCCAACAGCTAAAAATGCCCGAGGCCATACTATTGCTCCAGAAACTACTGGACAACCAAACATGGCTGACTTGCTGGAAGCTGTAATGAAGAGTGGAATCCTTTCTAATAACTCAACTTGTGGTGCGATCAAGGAAGAGAGTTCTCAAAATGAGGTTAACCCAATGGCACCAATCCTGTCAGCAGCCTTTAAGTCTAAGACTTTGCCACCATCATTGCCAATTCCAGTGGCTGGTGACAATTTATTAGCTCGTTTAAAAGTTGAACAATCCTCCGCACCACTTGGTTCGTGCGCAGTGTCTCTTGCTAGTGTCACATCAGCACAGACATCAAAAGAGAATAGTAAGGCCTCAGATCCTCTGTCGTGCCTCTTGAGCTCCTTAGTTTCACAGGGCTTGATATCTGCTTCAAAGAAGGAGCTGCCATCTCTCGTACAATGTGTAGCTCCTTTCATAACACAGGATCATAGTCCTGATCATTCTACCAACAGCTCTACGTCTGTATCTGTGGTTCCATCAGATGCTCAACCATTGGCTTTGGTGAAGAAGGGTCAATCCAGTGCCCCGAAGGTAGCACCAGTGGAAACAGCAAAACTGGAACCAGAAAACCTAATAGGATTGAAGTTTAGGGCAGACAAAATCCGTGAACTTCACCCCTCGGTGATTAGTAGTCTCTTTGATGACCTTCCTCATCTCTGCAGCTCCTGTGGCGTTCGCCTTAAACAAAAGGAAGAGCTTGACAGACACATGCAGCTGCACGATAAGAAGAAGCTTAAGTTAAGTGGCACAGACAGTAAAAGTAGGTTTTGGTTTCCAAAGGCTGATGACTGGATAGCAGGAGGAGCTGGAGAGCTAGAACCTGAAGATGAGGAAGTTCTGAGTGAACCTGAAGATGAGGAAGTTCTGAGTGAACCTGAGAGTGCTGTTGAGGATGGTCCAGGCGTAGCTGCTGATGAGGACCAATGCGCATGTATATTATGCGGAGAAATATTTGAGGAATATTTCGGTCAAGAAACGGGTCAATGGATGTTCAAGGGGGCTTCTTACCTGACCATTCCTCTAGCCAACAGTGAGACCAATGGTCCGATCGTACATGCAGTTTGCTTGACCAAGAATTCGTTGCAGAGCTTGGAAGTTGGAAATGCAATCAAGCAGGAAACTTGTTTCTCTTAG
Protein Sequence:
- >Thhalv10016259m|Eutrema_salsugineum|C2H2|Thhalv10016259m
MHSNMRHLFGTWKGVFHPQTLQLIEKELGFNARSDGSAAAVTTGRADPQSQRPPHSIHVNPKYLERQRLQQSGRTKVMVTDVPEISNLTRDSDRLERVSSISSGGSWAGPAKVNTIRRPQRDSLSEPLYEKDVASIAGEYDYASDLPHNSRSVIKKVGSRVTDDGCEKQWYEDMSRGPDLISDQRDELHTKSRISDYATARLENSESSGPSRNIGVPYDSWKNSEEEEFMWDLHSRLSETDVATINPKNELQAPDESERLESENHLLKRPRFPALDSRFDPATSINSYSCEQKDPNVFGRWTSSPRSLHDSEVFPSIGTTSNAARKGIQPQSRVASSGILPGTVSDRQSPLHDSTSKQNVTKQDCRRAHSLPQRDPRASRFPAKSQSVPRDDSGRPLSSSTSSSQLKNTNTLQLPDASQVEKFDSKPTAKNARGHTIAPETTGQPNMADLLEAVMKSGILSNNSTCGAIKEESSQNEVNPMAPILSAAFKSKTLPPSLPIPVAGDNLLARLKVEQSSAPLGSCAVSLASVTSAQTSKENSKASDPLSCLLSSLVSQGLISASKKELPSLVQCVAPFITQDHSPDHSTNSSTSVSVVPSDAQPLALVKKGQSSAPKVAPVETAKLEPENLIGLKFRADKIRELHPSVISSLFDDLPHLCSSCGVRLKQKEELDRHMQLHDKKKLKLSGTDSKSRFWFPKADDWIAGGAGELEPEDEEVLSEPEDEEVLSEPESAVEDGPGVAADEDQCACILCGEIFEEYFGQETGQWMFKGASYLTIPLANSETNGPIVHAVCLTKNSLQSLEVGNAIKQETCFS*