Information report for Thhalv10012473m
Gene Details
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Functional Annotation
- Refseq: XP_024012477.1 — pentatricopeptide repeat-containing protein At5g15280, mitochondrial
- Swissprot: Q9LXF4 — PP384_ARATH; Pentatricopeptide repeat-containing protein At5g15280, mitochondrial
- TrEMBL: V4N7B2 — V4N7B2_EUTSA; Uncharacterized protein
- STRING: XP_006400048.1 — (Eutrema salsugineum)
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G06710, AT3G22470, AT3G48810
- Arachis hypogaea: arahy.Tifrunner.gnm1.ann1.8Z4KH7
- Brassica napus: GSBRNA2T00151759001
- Brassica oleracea: XP_013621084.1, Bol041075
- Daucus carota: DCAR_016546, DCAR_015659
- Glycine max: GmPPR576
- Lotus japonicus: Lj1g0015996, Lj3g0013909
- Medicago truncatula: Medtr1g031720
- Oryza sativa: FLO10, Rf4;PPR782a, TCD10, YSA
- Triticum aestivum: Rf1;RFL77, Rf1
Sequences
CDS Sequence:
- >Thhalv10012473m|Eutrema_salsugineum|C2H2|Thhalv10012473m
ATGCATAATCTTTTCTCTATCAGTAGTAACTCTACGAGGCCTCGTATTCTTAACAAGGTTTCTTCTCTCATATGTCGTTACTCTTACGCTGTTTTCTCTATCACCAAGTCGGCTTCTCCTTCATCTCCCCAGGGAAATGATTCAGCAACCCAAAGCAACAACGTATCTTCATCGTTTAGTTTACTCTCCGCTGCGGCGGAGAACCGTGGCGTTACTGGTTCTCTTCTGAAAGACTTGCTTTTGGATTTGTCCGATGTGGTTCCCACTATTACCCGTAGATTTAGAAGATTTCCTGGTTTGAAACCCGAAAATGTGCTCGAATTGTTACTGGGTTTTCAATCTGAGCTCCAGAGAGGTGGAGTTGAAGGTAGAAAGGTCCGACCTTTATGGGAGATTTTTAGATGGGCTAGTGGGCAATACAAGGGGTTTAAGCATCTACCTCTGGCTTGTGAGATCATGGCATCGATGCTTATCATGGAAGGAATGGTTAAGGATGTTGAATTGTTGCTTTTGGAAATGGATAACAATGGAGATACTTTGTATAATGAGGGAGTTTTCTGTGAATTGATCCAGAAATATGTCGATGATTTCAATTCCAGGAAGGCAGTTATGCTGTTCGATTGGATGAGGCGTAAAGGTTTAGTACCATTGAATTCGTGTTACCAGACTCTGATTGATCATTTGGTTAGAGTTCACAGAACAGAATCAGCATATAGAATTTGTTTGGATTGGTTGGAGACAACGGCTGAATCAAATGACGTGAACATAGATAGATTTGGGAAAGTTATCGAGTTGCTTTGCTTGGATCAGAGGGTTCAGGAGGCTAGAGTTCTTGCGAGAAAGCTTGCGGCTTTGGGTTGTAACCCGAATAGCTCAATATATAGTAAGATTTGTTTAGGATACAGCGAGAAGCAGGACTTTGAGGATTTGTTGAGTTTCATTGGTGAGCTTAAATATGAACCTGATGTGTTTGTTGGCAATAGGATTGTGCATTCTCTCTGCAGGAAGTTTGGCACAGAGAGAGCTTATGTATATATGGAGGAGCTTGAACACTTGGGTTTCAAACCCGATGAGGTCACATTCGGCATCTTGATTGGTTGGTGTTGTTATGAAGGCGATATCAAAAGAGCATTTCTTTATTTATCCGAGATTACTTCAAAGGGTTTAAAACCAGATGTGTATAGTTACAATGCTATCTTAAGTGGCCTTTTTAGAAAAGGATTGTGGCAGCATACCCCTTGTATTCTGGATGAGATGAAGGAAAATGGAATGTTGCTCAGCTTGTCTACGTTTAAGATAATGGTAACTGGATACTGCAAAGCTAGACGATTTGAAGAAGCTAAGGCGATTGTTAACGAGATGTTTGGTTATGGATTAATCGAAGCATCTAAAGTCGGAGATCCGCTTTCTGAAGCTTTTAGTTTAGTTGGATTTGATCCCTTAGCTGTAAGATTGAAAAGGGACAATAATTCCGGATTCTCCAAAGCAGAGTTCTTCGATGATCTTGGGAATGGGCTATATTTGGACACTGATTTGGATGCCTACGAGCAGAGGGTGAATATGGTACTTGACAGGTCGGTGCTACCAGAATTTAATTCGCTAATCGTTAGAGCATGTAACGACGGGGATTTACAAACAGCTTTGGAGCTTCTTGATGAAATGGCTCGATGGGGTCAAAAACTATCGCGTCGTGGGTTTACTGTTTTAATGAAGAGTCTCTGCGCATCACGTTCTCATGTCAGAGTAAGTATTAGCATTATGGGAAAATGGCCAAAGCTGGCTAATTTGTTAGATGGAGAAACTCTTAACTTTCTTGTCCAAGAATATTGCAAGAAGGGATTTAGCCGCCAAAGCAAACTCATTTTCCATAGAATGGTTCAAATGCATCTTCCTATCGATAACGCCACTTACACATCTTTGATAAGTTGTTTCTGTAAGAAAGAAACACTCAATAATCTCCTGAATGTATGGGACGCTGCCCAAAATGCTAACTGGTTACCAGATTTGGACAATTGCGGAGCTATATGGGAATGTCTTCTCCAGAAAGGACTGGTAGAGGAAGCTTTTAAACTCTTTGAGCGTATATCAATATCACAGTCAGAAGCATGTCGGGTTTTTGTGGAGAAGCTCACAGTTCTTGGGTTTTCTCATATCGCTCATTCTGTTGTGAAACGACTTGAAGGAGAGGGTTACGTTGTGGAAGATGAGGTATACAACCATCTTGTTAAGGGACTCTATAAGGATAAGAAGGATTTGGCTGCATTTGCTATGCTCGAGGAAATGCTAGACAAGAAACAGATTCCAAGCTTGGGAAGTTGTTTGTCGTTAATTCCTCGACTTTGTGGAGCTAACAAAATAGAGCAGGCATTTACTTTAGCAGAACAATTAGATTCATCTTCTCTCAACTATGCTTTGCTAGAAGAACTATGCTTCGCTGGGAGAATTCTCGACGCAGAAAATCAGTTATGGATAATGTTATCAAATGGGTTTTTACCGGACAAAGCTATCTACAATGTGATGTTTCAAGGTTATTGTAAAGCTAACAACTCGAGAAAAGTTCAGGAACTACTAGGAATCTTGGTGAGGAAGAACGTAATCTGCTCCGTTACGAGTTACAGGGAATATGTTCGGAAAATGTGTTCAGAGCGTCAGTTTCTCTCTGCGCTTAATCTGAAGGAGTTTCTGTTGATAGGAGAAAGCAATCCTGGCGGCGTAATAACCTATAATCTGCTGATTTTCTATCTCTTTCGGAGTAAGAATCGCTTAAAGGTTAATAAAATCTTGCTCGAAATGCGGGGAAGAGGATTCTTGCCTGATCAAACCACGCTTAACTTTCTTGTACACGGTTACTCTCTGTGCGGAGATGATTCGAGTTCTCTGCAATATCTCTCGGCTATGATCTCCGAGGGGATGAAACCGAGCAATCGAAGCTTAAGAGTGGTTATCAGTTCTCTCTGTGACAATGGAGATGTGAAGAAAGCTCTAAACTTGTGGCAGGTAATGGAATCAAAAGGCTGGGTTTTTGGTTCTTCAGTTGTCCAAACCAAAATCGCCGAGTCCTTGATTTCGAGAGGCGAAATTCTAAAAGCTGAAGACTTTCTGATCCGTGTGACACGCAATGGCATGATGGCTCCTAGCTACGACAATCTCATCAAGAAACTATCTGATCGCGGGAGTCTTGACATTGCGGTTCATCTCTTGAACACAGTGTTAAAGAACCGAAGCATCCCGGATCCATCTAGTTATGATTCAGTCATCAATGGCTTCCTGAGGTGCAACAACCAGTTGGATAAAGCTATGGACTTTCATACAGAAATGATGGAACTAGGTCTAAGGCCAAGCATGAGTACATGGAGTGGTCTTGTTCATAAGTATTGCGAGGCATGTCAAGTTTTAGAATCAGAAAGACTTATCAAATCAATGGTTGAGTCAAGCGAAACACCGAGTCAAGAGATGTTTAAGACTGTGATTGACCGGTTTCGAGTAGAGAAGAACACAGTGAAAGCTACGGAGATGATGGAAATGATGCAAAAGTGTGGCTATGAAATTGATTTTGAGACTCATTGGTCTTTGATTAGTAACATGAGCTCCTGTAAGGAGAATAAGACAGCTGGTCAAGGATTCTTGTCTAGGCTTCTCTCTGGGAATGGGTTTGCTTGGAAGCGATGA
Protein Sequence:
- >Thhalv10012473m|Eutrema_salsugineum|C2H2|Thhalv10012473m
MHNLFSISSNSTRPRILNKVSSLICRYSYAVFSITKSASPSSPQGNDSATQSNNVSSSFSLLSAAAENRGVTGSLLKDLLLDLSDVVPTITRRFRRFPGLKPENVLELLLGFQSELQRGGVEGRKVRPLWEIFRWASGQYKGFKHLPLACEIMASMLIMEGMVKDVELLLLEMDNNGDTLYNEGVFCELIQKYVDDFNSRKAVMLFDWMRRKGLVPLNSCYQTLIDHLVRVHRTESAYRICLDWLETTAESNDVNIDRFGKVIELLCLDQRVQEARVLARKLAALGCNPNSSIYSKICLGYSEKQDFEDLLSFIGELKYEPDVFVGNRIVHSLCRKFGTERAYVYMEELEHLGFKPDEVTFGILIGWCCYEGDIKRAFLYLSEITSKGLKPDVYSYNAILSGLFRKGLWQHTPCILDEMKENGMLLSLSTFKIMVTGYCKARRFEEAKAIVNEMFGYGLIEASKVGDPLSEAFSLVGFDPLAVRLKRDNNSGFSKAEFFDDLGNGLYLDTDLDAYEQRVNMVLDRSVLPEFNSLIVRACNDGDLQTALELLDEMARWGQKLSRRGFTVLMKSLCASRSHVRVSISIMGKWPKLANLLDGETLNFLVQEYCKKGFSRQSKLIFHRMVQMHLPIDNATYTSLISCFCKKETLNNLLNVWDAAQNANWLPDLDNCGAIWECLLQKGLVEEAFKLFERISISQSEACRVFVEKLTVLGFSHIAHSVVKRLEGEGYVVEDEVYNHLVKGLYKDKKDLAAFAMLEEMLDKKQIPSLGSCLSLIPRLCGANKIEQAFTLAEQLDSSSLNYALLEELCFAGRILDAENQLWIMLSNGFLPDKAIYNVMFQGYCKANNSRKVQELLGILVRKNVICSVTSYREYVRKMCSERQFLSALNLKEFLLIGESNPGGVITYNLLIFYLFRSKNRLKVNKILLEMRGRGFLPDQTTLNFLVHGYSLCGDDSSSLQYLSAMISEGMKPSNRSLRVVISSLCDNGDVKKALNLWQVMESKGWVFGSSVVQTKIAESLISRGEILKAEDFLIRVTRNGMMAPSYDNLIKKLSDRGSLDIAVHLLNTVLKNRSIPDPSSYDSVINGFLRCNNQLDKAMDFHTEMMELGLRPSMSTWSGLVHKYCEACQVLESERLIKSMVESSETPSQEMFKTVIDRFRVEKNTVKATEMMEMMQKCGYEIDFETHWSLISNMSSCKENKTAGQGFLSRLLSGNGFAWKR*