Information report for Thhalv10010068m
Gene Details
|
|
Functional Annotation
- Refseq: XP_006404260.1 — lysine-specific demethylase REF6
- Refseq: XP_024013589.1 — lysine-specific demethylase REF6
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: V4M0K3 — V4M0K3_EUTSA; Uncharacterized protein
- STRING: XP_006404260.1 — (Eutrema salsugineum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G48430.1
- Brassica napus: GSBRNA2T00068139001, GSBRNA2T00125332001
- Raphanus raphanistrum: RrC10366_p1
Sequences
CDS Sequence:
- >Thhalv10010068m|Eutrema_salsugineum|C2H2|Thhalv10010068m
ATGGTGGTTTCGGAGCAGAGCCCAGACGTGTTTCCATGGCTGAAATCGTTGCCGGTTGCACCAGAGTTCCGACCTACTTTAGCAGAGTTCCAAGATCCGATCGCTTACATTTTCAAAATCGAAGAGGAAGCTTCAAGATACGGAATCTGCAAAATTGTGCCTCCAGTGCCTCCTCCTTCGAAGAAAACCACGATTTCTAACCTCAACCGTTCTCTGGCGTCGCTAGCGACGGCGAGGGTTCGTGACGGCGGCGATGCTTTCGATTACGACGGTGCCCCCACATTCGCCACGCGTCAACAGCAGATCGGGTTTTGCCCTAGGAAGCAGCGACCCGTACAGAGACCAGTGTGGCAGAGCGGAGAGCATTACAGTTTCGGTGAGTTTGAGTTTAAAGCTAAGAACTTTGAGAAGAATTATCTAAGGAAATGCGGCAAAAAGAGTCAACTTTCTGCCCTAGAAATCGAAACCCTTTACTGGAGAGCCACAGTGGACAAACCCTTCTCTGTTGAGTACGCAAACGACATGCCTGGCTCGGCTTTTATCCCTCTGAGCCTGGCGGCTGCAAGGAGAAGAGAGTCTGGTGGTGATGGAGGAACAGTTGGTGAGACAGCTTGGAACATGAGGGCAATGGCCAGAGCTGAAGGATCGTTGCTTAAGTTCATGAAAGAGGAGATCCCTGGAGTTACATCTCCAATGGTGTATATTGCTATGATGTTTAGTTGGTTTGCTTGGCATGTGGAAGACCATGACCTTCATAGTCTCAATTACTTGCATATGGGTGCTAGTAAGACTTGGTACGGCGTTCCAAAGGATGCTGCTGTGGCTTTTGAGGAGGTGGTTAGGGTTCATGGCTATGGAGGAGAGCTTAATCCTCTTGTGACATTTTCAACTCTTGGTGACAAGACAACTGTGATGTCTCCTGAAGTATTTGTTAAAGCCGGAATACCATGTTGCAGGTTAGTGCAAAATCCTGGTGAGTTTGTCGTCACTTTTCCAAGAGCATATCATTCGGGGTTTAGTCACGGATTCAATTGTGGAGAGGCATCTAACATTGCAACTCCCGAGTGGTTGAGAATTGCAAAAGATGCTGCCATCCGGCGAGCTGCTATAAATTACCCTCCAATGGTTTCTCATCTCCAGTTACTTTATGACTTTGCATTGGCTTTGTGTTCAAGAGTGCCAACAAGCATCCACACCAAACCACGGAGTTCTAGATTGAAAGATAAGAAAAGAAGTGAAGGAGAAAAATTGACTAAAGAGCTATTTGTGCAAAACATTATCCATAACAATGAATTGCTCCGTTCTCTTGGAAAAAGATCTCCTGTCGCTCTTCTTCCGCAGAGTTCCTCAGATGTATCGGTTTGTTCTGACCTCAGAGTTGGATCCCATTTGAGAACTAACCAGGAAAGGCCAATCCAATTAAAATCCGAGGACTTCAGTTCTGATAGTATTATGGCCGGACTCAGTAACGGTTTCAAGGATGTGGTCTCAGTGAAAGAAAAGTTTACATCTTTGTGTGAAAGGAATAGAAATTACCTGGCAAGCAGAGAGAACGAAACTCAAGGAACTTTGACAGATGCTGAAAGGAAGAATGACAGAGCAGTTGGGCTTTCGGATCAGAGGCTTTTCTCTTGTGTCACATGTGGAATCTTATGCTTTGATTGTGTAGCTATTGTTCAACCTAAAGAAGCAGCAGCTAGATATCTCATGTCTGCAGATTGTAGCTTCTTCAATGATTGGACAGCTACTTCAGGATCTGCAAATCTTGGTCAGGATTCAAGATTTTCTGCAGTGAAGCCTCATTCAGAAAGCACAGGAAAGCATGATGTAGATGACTTCTACAATGTTCCTGTTCAAACTACGGATGAAAGAACTTCAACAACTTCTTTAACAAAAGCGCAAAAAGAAGATGGTGCTCTTGGGTTGTTAGCTTCAGCGTATGGAGATTCTTCTGATTCCGAGGAAGAAGATCACAAAGGCTTAGATACTATTATCTCGGAAGAGAGAAAGTATGACCACAATGGTATTGAGGAGGCTACAGATGGTCAAGCTTTTGATAATAGCAGTCAAAGACTTTCATGTGGGAAAGGGAAAGGGGTTGTTGAGGGATCAAATGCTGCTGAACATGATAGGTTAAGTAATGGTGGCAGTACATCAAATCTGGAAATAGCTTTCCCCTTTGTTCCAAGATCTGATGATGATTCCTCTCGGTTGCACGTATTTTGTCTTGAGCATGCTGCAGAAGTGGAACAGCAACTCCGTCCTCTAGGAGGGATTCGCATTATGTTACTATGCCATCCAGAGTATCCCAGGATAGAGGCTGAAGCAAAGATAGTTGCCGATGAGCTTGGAGTCAATCACGAGTGGAATGATACTGAATTCAGGAATGTGACTCGAGAGGATGAGGAAATGATTCAGGCAGCGTTGGATAATGTTGAAGCTAAGGCTGGGAACAGTGATTGGTCTGTAAAGTTGGGTATTAACCTTTCTTACAGCGCCATTCTCAGTCGCTCTCCTCTGTACAGTAAGCAGATGCCTTACAACTCAGTCATATACAATGCGTTCGGTCGTGGCTCTCCAGCAACGAGCTCACCCACGAAACCCCAAGTTTCTGGTAAAAGATCTTCCAGACAGAGGAAATATGTTGTTGGAAAATGGTGTGGGAAAGTTTGGATGTCGCATCAGGTGCATCCCTTTTTGCTGCAGCAGGACTTAGAGGGGGATGAATCTGAAAGAAGTTGTCATCTGCGAGGTGCTCTGGATGATGATGTCACTGGAAAGAGATTGTCTCCTTGTGATGTTTCTAGAGATGCAACCACAATGTTCGGAAGAAAGTATTGTAGGAAGAGAAAGATGAGAGCAAAGGCTGTGCCACGCAAGAAGCTTACCTCTTTTAAGAGGGAAGATGGAGTTTCTGATGACACCTCAGAAGATCATTCTTATAAGCAGCAATGGAGGGCTTCAAGGAATGAGGAAGAGTCTTATTTTGAAACAGGGAATACAGTTTCTGGTGATTCATCAAATGAAATGTCTGATTCGCAGCTCAAGAGAATTCGTCGAGACAAGGGTGTTAAAGAGTTTGAGTCAGATGATGAGGTTTCAGACCGTTCACTTGGAGAAGAATATGCTGTAAGGGAATGTGCAGTTTCAGAGAGCTCAATGGAAAATAACTTTCAGCCATATAAACAGTCAGTGGACAGAAAACCCTTGGAGGATACTGTATATGGTCACAATGATGATATTATCTACAGGTACCCTAGGGGGATTCCAAGGAGCAAACGGAAAAAAGTGTTTAGGAATCCGGTTTCATATGATTCAGAAGAAAATGACATTTATCAGCAACGAAGAAATATTCAAGCTACTGGTGAGTATGTTTCAGCAGAGGATTCTCTGGAGGAACAAGACTTTTACACTACAGGGAAAAGGCAAACCAGGTCCACAGCTAAACGTAAAGTAAAAACCGAGATAGTTCAGAGTCGGAGAGACACGAGATGTCGGACTTTGCAACAATCTGGATCCGGAAAGATGAATCAAGAATTGAATTCATACATGGAAGGACCTAGCACACGACTTAGGGTGAGAAATCAGAACCCTTCAAGAGGGTTTTCAGAAACAAAACCGAAGAAAACTAGTAAGAAAAGAAGAAGTAATGCTTCCTTCTCCAGAATTGTAAGTGAAGAAGAGTTGGAAGAAGAAGACAAAGAAGAAGTAGAGAATGAGGAAGAGGAATGCGCAGCGTACCGATGTGACATGGAGGGTTGCAGAATGAGTTTCAATTCTGAGAAACAGTTGTCTCTGCATAAAAGAAACATCTGCCCTGTTAAAGGATGTGGTAAAAACTTCTTCTCGCACAAGTATTTGGTTCAACACCAGCGTGTTCATTCAGACGACCGTCCTCTGAAATGTCCATGGAAAGGCTGCAAGATGACGTTCAAGTGGGCTTGGTCTAGAACCGAGCACATAAGGGTTCACACAGGTGCAAGGCCTTATGTTTGTGCTGAACCGGGTTGTGATCAGACATTTCGGTTTGTCTCTGACTTCAGTAGACATAAACGGAAGACGGGTCATTCAGTTAAGAAGGCCAAAAGAAGGTGA
Protein Sequence:
- >Thhalv10010068m|Eutrema_salsugineum|C2H2|Thhalv10010068m
MVVSEQSPDVFPWLKSLPVAPEFRPTLAEFQDPIAYIFKIEEEASRYGICKIVPPVPPPSKKTTISNLNRSLASLATARVRDGGDAFDYDGAPTFATRQQQIGFCPRKQRPVQRPVWQSGEHYSFGEFEFKAKNFEKNYLRKCGKKSQLSALEIETLYWRATVDKPFSVEYANDMPGSAFIPLSLAAARRRESGGDGGTVGETAWNMRAMARAEGSLLKFMKEEIPGVTSPMVYIAMMFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPKDAAVAFEEVVRVHGYGGELNPLVTFSTLGDKTTVMSPEVFVKAGIPCCRLVQNPGEFVVTFPRAYHSGFSHGFNCGEASNIATPEWLRIAKDAAIRRAAINYPPMVSHLQLLYDFALALCSRVPTSIHTKPRSSRLKDKKRSEGEKLTKELFVQNIIHNNELLRSLGKRSPVALLPQSSSDVSVCSDLRVGSHLRTNQERPIQLKSEDFSSDSIMAGLSNGFKDVVSVKEKFTSLCERNRNYLASRENETQGTLTDAERKNDRAVGLSDQRLFSCVTCGILCFDCVAIVQPKEAAARYLMSADCSFFNDWTATSGSANLGQDSRFSAVKPHSESTGKHDVDDFYNVPVQTTDERTSTTSLTKAQKEDGALGLLASAYGDSSDSEEEDHKGLDTIISEERKYDHNGIEEATDGQAFDNSSQRLSCGKGKGVVEGSNAAEHDRLSNGGSTSNLEIAFPFVPRSDDDSSRLHVFCLEHAAEVEQQLRPLGGIRIMLLCHPEYPRIEAEAKIVADELGVNHEWNDTEFRNVTREDEEMIQAALDNVEAKAGNSDWSVKLGINLSYSAILSRSPLYSKQMPYNSVIYNAFGRGSPATSSPTKPQVSGKRSSRQRKYVVGKWCGKVWMSHQVHPFLLQQDLEGDESERSCHLRGALDDDVTGKRLSPCDVSRDATTMFGRKYCRKRKMRAKAVPRKKLTSFKREDGVSDDTSEDHSYKQQWRASRNEEESYFETGNTVSGDSSNEMSDSQLKRIRRDKGVKEFESDDEVSDRSLGEEYAVRECAVSESSMENNFQPYKQSVDRKPLEDTVYGHNDDIIYRYPRGIPRSKRKKVFRNPVSYDSEENDIYQQRRNIQATGEYVSAEDSLEEQDFYTTGKRQTRSTAKRKVKTEIVQSRRDTRCRTLQQSGSGKMNQELNSYMEGPSTRLRVRNQNPSRGFSETKPKKTSKKRRSNASFSRIVSEEELEEEDKEEVENEEEECAAYRCDMEGCRMSFNSEKQLSLHKRNICPVKGCGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPGCDQTFRFVSDFSRHKRKTGHSVKKAKRR*