Information report for Thecc1EG014549t1
Gene Details
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Functional Annotation
- Refseq: XP_007037855.2 — PREDICTED: lysine-specific demethylase REF6
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: A0A061FYM0 — A0A061FYM0_THECC; Relative of early flowering 6, putative isoform 1
- STRING: EOY22356 — (Theobroma cacao)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_09671_BGI-A2_v1.0, Cotton_A_18629_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D07G0545, Gohir.D07G058400, Gohir.A09G244800, Gh_A09G2168, Gh_D09G2376, Gohir.D09G245700, Gohir.A07G054000
- Populus trichocarpa: Potri.015G089000.1, POPTR_015G089000v3, Potri.012G092400.1, POPTR_012G092400v3
Sequences
CDS Sequence:
- >Thecc1EG014549t1|Theobroma_cacao|C2H2|Thecc1EG014549t1
ATGGCTGCTTCAAGCCTTTCACCAGAGCCAAGTCAAGAAGTGTTTTCCTGGCTGAAATCTCTGCCTTTAGCTCCAGAGTACCGGCCTACTTTGGCAGAGTTTCAAGATCCAATTGCCTACATTTTCAAGATCGAAAAAGAGGCTTCCCAGTATGGAATCTGCAAAATCATACCTCCAGTGCCGCCTGCTCCTAAAAAGACAGCAATTGGGAACCTCAATCGCTCCCTTTTGGCTCGTGCCGCAGCTAATACTAGCTCCGATTCGAAGCCGGCACCCACATTCACTACCCGCCAACAGCAGATCGGGTTTTGCCCCAGAAAACCACGGCCCGTTCAGAAACCCGTCTGGCAGAGTGGGGAGTACTACACTTTCCAAGAATTCGAAGCAAAAGCGAAGAATTTCGAAAGGGGTTACTTGAAAAGATACAGCAGAAAGGGTTCCCTTTCAGCTTTGGAAGTCGAAACCCTTTTTTGGAAAGCGACGGTTGACAAACCCTTTTCCGTTGAGTACGCTAACGACATGCCTGGTTCAGCTTTTGTGCCTCTGAGCTCAAAGAAGAGCAGTGGTGGAGGGAGAGAAGCAGGGGAAGGAGTTACGGTTGGGGAGACACCGTGGAATATGAGGGCAGTCTCGAGGGCAAAAGGGTCATTGTTAAGGTTCATGAAGGACGAGATTCCGGGTGTTACTTCCCCTATGGTGTACATTGCAATGTTGTTCAGTTGGTTCGCTTGGCATGTAGAGGATCACGACTTGCATAGCTTGAATTATTTGCATATGGGAGCAGGGAAGACATGGTACGGTGTTCCAAGGGATGCCGCGGTTGCTTTCGAGGAGGTGGTCAGGCTTGATGGCTATGGAGGAGAGTTCAATCCTCTTGTTACCTTTTCCACCCTTGGTGAGAAGACCACAGTGATGTCTCCTGAAGTATTTGTTCATGCTGGGATTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAGTTTGTTGTCACTTTTCCAAGAGCCTATCATTCAGGGTTCAGTCATGGATTTAATTTTGGAGAGGCAGCTAATATTGCAACACCAGAATGGTTGAGAGTGGCCAGAGATGCTGCTATTCGAAGAGCTTCAATTAATTACCCTCCGATGGTCTCTCATTTCCAGTTACTCTATGATCTTGCACTTGAGTTATGTTCAAGGGTACCTATGAGCATCAATGCTAAACCAAAGAGTTCTCGACTAAAGGATAAGAAAAAAAGTGAAGGAGAAACCTTGGTTAAAGAATTATTTGTGCAGAACCTTATGCAGAACAATGAACTACTTCATATTCTTGGAAAAGGATCTTCAGTGGTACTACTCCCCAAAAGTTCTTCTGATATTTCTCCTTGTTCAGATTTACGTGTTGCATCCCAAATAAGAATAAACCCTAGGATGTCACGTGGCTTATGCAACTACAAAGATGTTGTGAAATTATCCAAAGACTTAGCTTCTGATGAGATCATGGTAGGTGGGAATGAAGAAATCAAGGGAGTAAAAGGTTTCTATTCAGTGAAAGGAAAATTTGCTTCAATGTATGAGGGTAACCGGGATTCTGCTTTTAATGGAACTGATCATTTGTGTAGACTGCCGTTGCAGACCTTGAACATGAGCGCAGAAGGAGAAAATGCTGTTCAAGGTGATGCATTGTCAGATCAGGGACTGTTTTCATGCGTCACATGTGGAATATTGTGCTTTTCTTGCATTGCTGTTCTTCAACCAACTGAACAAGCGGCTAGATACCTCATGTCAGCTGATTGTAGCTTTTTTAATGATTGGACTGTTGGTTCTGGAGTAACTCGTGATGGGTTCACCACTACTCATGGGGATGTAATTACTTCTGAGCAAAATTCCTGTACAAGGTGGATGAACAAAAGAGCTCCAAATGCTTTATATGATGTCCCTGTTCAGTCTGTTGAGGACAAGTTTCATATGGCAGATCAAAGTAACCAAGTGGTGGAAGATACTGAAAAAGGGGGAGATACTTCTGCTCTTGGTCTATTAGCTTCCACATATGGAAATTCATCTGATTCTGAAGAAGATCATGTTGAACCAAATGTTACTGTCTCTGGTGATGAGACAAATTCAGCAAACCGTTCATTAGAAAGGAAATTTCAGTATAATGGTTCTGGTTTCTCTCCTGGTGATGCAAATGGGAGTAATAATCCCTCATTATTAAGGCTTGAATCTGAGGAAGAAGCTCCTGTGCATGTTGACATCAAGTCTACGAGCCCTCAAGCATTTGACCACACTGTTGAGTTTGAAACTGATAATCTTGCTTCAAGAAGATCAATCGGTTTGGAGGATAAATTTAGAGATCCAATCACAACATCACATGCTAATCCAAGTTACTCACCGGCCACTCATGGCGCAGAGAAAATGAGGTTTAGCAAGACCATGGTACCAATGGAGAATGCGGATATTCCATTTGCTCCGAGGTCTGATGAAGATTCTTCTCGAATGCATGTCTTCTGTCTTGAGCATGCTGTAGAAGTAGACCAGCAACTTCGTCAAATAGGAGGAGTGCATGTATTTCTCCTTTGTCATCCAGAGTATCCCAAGATAGAAGCAGAAGCAAAGTTGGTGACCGAAGAACTAGGAATTGATTATCCCTGGAATGACATTTTATTTGGGGATGCTACTAAGGAGGATGAGGAGAGGATCCAGTCAGCTCTTGATAGTGAGGATGCTATACCTGGGAACGGAGACTGGGCTGTAAAGTTGGGTGTCAACCTATTTTATAGTGCCAATCTCAGCCGCTCTACCCTGTACAGTAAACAGATGCCATACAATTATGTTATATACAGTGCATTTGGCCGTAACTCTCCTGGTAGCTCACCCACAAAATTGAATGTGTATGGGAGGAGGTCTGGCAAGCAGAAAAAAGTGGTGGCAGGAAAATGGTGTGGTAAAGTTTGGATGTCAAATCAGGTTCATCCATTTTTGGCACAAAGGGATCCTGAGGAACAAGAACAAGAAAGAGGCTTTCATGCTTGGGCAACTTCAGATGAAAATCTTGAGAGAAAACCAGAAAATGTTCACAAAGCTGAAACAACCAAGGTGGCTAAAAAGTTTAATAGAAAGAGAAAAATGAGGCCTGAGATTGCATCAAGCAAGAAAGTGAAATGCATTGAGACAGAGGGTGCAGTTTCAGATGATTCATTGGATGGTGGTTCTCTTAGGCAGCAACAGATTTTTTTTAGAGGCAAGCAGCCTAGACTGATTCAGAAAGAAGAGGCAATTTCATATGATTTGCTTGAGGATGATTCTCTTCTGCAGCAAAGGAATCTCTCCAGAAAAAAATTGGCAAAATTTATTGAAAGAGAAGGTGCTGAATCAGAAGATGCAGAAGAGGAATTTACTCATCAGCAGCATTGGAGGAATCTCAGAGGCAAGCAAGGCAAATATATTGAAGAAGATGATGCAGTTTCGGGTGATTCACTTGATGAAAGTTCTCTTAAGCAGTACAGGAGGATTCCTCGAAGTTGGCAGGCCAAATTTAGGGAGAGAGAAGATATTGTATCAGAGGATGAACTAGAGGAAATTTCTCATCGGCTGCATAGGAGGATTCCTAGATGCAGGCAAATCAAGTCATGTGAGAAGAATGATGCTATATCAGATGATTCACGAGCAGATAATTCTCTTAAGCAGTATAGAAGAATGCCTAAAGGCAGGCAAGCAAACTTTGTTGAGAGAGATGATACAATGTCAGATGATGCATCAGAAGATGATTCTCAACATCAGCTTAGGAGGATTCCTAAAGGCAAGCAAATGAAGTGCATGGAAAGAGATGATGCATTTTCAGATGATTCACTTGAGGATAATCTTCAACAGCAGCATAGGATTCCTAGAAGCAAAGTGGCCAAGTTTACTGATAGAGAAGATGTAGTTTCCTTTGATTCATTGAAGGGTAGTTCTCATCAACAGCGTAGGAGGGTTTCTAGAAGCCAGCTAACCAAGTTTATTGAGAGGGAAGATGCGGTTTCGTCTGATTCTCCAGATGATAGTTCTCTTCAGCAGCTTAGGAGGATTCCGAGAAGTAAGCAAACCAAGATTCTTGAGAGGGAAGATGCAGTTTCAGATGATTCACTGGATGATACTTCTCAGCAGCAGCTTAGAAAGACTCCTAGAAGCAGACAAGGGAAATTTATTGAGAGGGAAGATGCAGTTTCATATGATTCGTTGGATGAGAATTATCACCAACCAAATAGGAGGACTCTTAGAAGCAGAAAGAAGAAAGCCCAGACACCGCGGCAAATAAAACAAGAAACCCCTCGGAATGTTAAACAAGGGAAACGTCGGACAACAAAACAAGTAGTCTCTCAGCAAATAAAACAAGAGACTCCTCGGAATCGGAACACCAAAATTGAGCAAAGTGCTAGACAGTGCAATTCATATGGTGAAGATGAGCTAGAAGGTGGACCCAGCACACGCCTTAGGAAAAGAGTCCGAAAGCCTCTGAAAGAGTCAGAAACAAAACCAAAAGAGAAGAAGCAGGCCAGTAAGAAGAAAGTGAAGAATGCTTCAAATGTGAAAACTCTAGCTGGTCACAATACTTCAAAAGTAAGGGATGAGGAAGCAGAATACCAGTGTGACATGGAAGGATGCACCATGAGTTTTGGCTTGAAACAAGAGCTGCTCCTGCACAAAAGAAACATTTGTCCGGTCAAGGGGTGTGGGAAGAAGTTCTTCTCACACAAGTATCTGGTGCAGCATCGCCGAGTTCATTTGGATGACCGACCTCTTAAATGCCCTTGGAAGGGCTGCAAGATGACATTCAAGTGGGCATGGGCCCGAACAGAACACATTAGGGTTCACACAGGTGCTCGTCCTTACGTGTGTGCAGAAGAAGGCTGTGGGCAGACATTTCGTTTTGTGTCAGATTTCAGTCGTCACAAACGAAAGACTGGTCATTCAGCAAAGAAAGGTAGGGGATAA
Protein Sequence:
- >Thecc1EG014549t1|Theobroma_cacao|C2H2|Thecc1EG014549t1
MAASSLSPEPSQEVFSWLKSLPLAPEYRPTLAEFQDPIAYIFKIEKEASQYGICKIIPPVPPAPKKTAIGNLNRSLLARAAANTSSDSKPAPTFTTRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKATVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLLRFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCSRVPMSINAKPKSSRLKDKKKSEGETLVKELFVQNLMQNNELLHILGKGSSVVLLPKSSSDISPCSDLRVASQIRINPRMSRGLCNYKDVVKLSKDLASDEIMVGGNEEIKGVKGFYSVKGKFASMYEGNRDSAFNGTDHLCRLPLQTLNMSAEGENAVQGDALSDQGLFSCVTCGILCFSCIAVLQPTEQAARYLMSADCSFFNDWTVGSGVTRDGFTTTHGDVITSEQNSCTRWMNKRAPNALYDVPVQSVEDKFHMADQSNQVVEDTEKGGDTSALGLLASTYGNSSDSEEDHVEPNVTVSGDETNSANRSLERKFQYNGSGFSPGDANGSNNPSLLRLESEEEAPVHVDIKSTSPQAFDHTVEFETDNLASRRSIGLEDKFRDPITTSHANPSYSPATHGAEKMRFSKTMVPMENADIPFAPRSDEDSSRMHVFCLEHAVEVDQQLRQIGGVHVFLLCHPEYPKIEAEAKLVTEELGIDYPWNDILFGDATKEDEERIQSALDSEDAIPGNGDWAVKLGVNLFYSANLSRSTLYSKQMPYNYVIYSAFGRNSPGSSPTKLNVYGRRSGKQKKVVAGKWCGKVWMSNQVHPFLAQRDPEEQEQERGFHAWATSDENLERKPENVHKAETTKVAKKFNRKRKMRPEIASSKKVKCIETEGAVSDDSLDGGSLRQQQIFFRGKQPRLIQKEEAISYDLLEDDSLLQQRNLSRKKLAKFIEREGAESEDAEEEFTHQQHWRNLRGKQGKYIEEDDAVSGDSLDESSLKQYRRIPRSWQAKFREREDIVSEDELEEISHRLHRRIPRCRQIKSCEKNDAISDDSRADNSLKQYRRMPKGRQANFVERDDTMSDDASEDDSQHQLRRIPKGKQMKCMERDDAFSDDSLEDNLQQQHRIPRSKVAKFTDREDVVSFDSLKGSSHQQRRRVSRSQLTKFIEREDAVSSDSPDDSSLQQLRRIPRSKQTKILEREDAVSDDSLDDTSQQQLRKTPRSRQGKFIEREDAVSYDSLDENYHQPNRRTLRSRKKKAQTPRQIKQETPRNVKQGKRRTTKQVVSQQIKQETPRNRNTKIEQSARQCNSYGEDELEGGPSTRLRKRVRKPLKESETKPKEKKQASKKKVKNASNVKTLAGHNTSKVRDEEAEYQCDMEGCTMSFGLKQELLLHKRNICPVKGCGKKFFSHKYLVQHRRVHLDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHSAKKGRG*