Information report for Spipo12G0053800
Gene Details
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Functional Annotation
- Refseq: XP_010265453.1 — PREDICTED: 4-coumarate–CoA ligase 2-like
- Swissprot: O24145 — 4CL1_TOBAC; 4-coumarate–CoA ligase 1
- TrEMBL: I6PD12 — I6PD12_9MAGN; 4-coumarate-CoA ligase
- STRING: XP_010265453.1 — (Nelumbo nucifera)
- GO:0008152 — Biological Process — metabolic process
- GO:0003824 — Molecular Function — catalytic activity
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G21240, AT3G21230, AT3G48990, AT3G16910, AT3G16170, AT3G05970
- Cajanus cajan: C.cajan_03634
- Musa acuminata: GSMUA_Achr10P30780_001
- Oryza sativa: Os4CL3, Os4CL4, Os4CL5, Os4CL2, Os4CL1, OsACOS12, OsBIABP1;SLAC1, OsAAE3, OsACS
- Solanum tuberosum: Soltu.DM.08G021250
- Zea mays: GRMZM2G048403_P01
Sequences
CDS Sequence:
- >Spipo12G0053800|Spirodela_polyrhiza|C2H2|Spipo12G0053800
ATGAGTTCGATGGGTGTAGCAGCTCCACCCTGTGAGGAGATCATTTACCGCTCCAAGCTCCCGGACATCGACATTCCCGGCCATCTACCGGTGCACGAGTACTGCTTCGAGAACCTCACCGCCGTCGCCGATCGGCCCTGCATCATCAACGGGCAGACGGGAGATGTCTTCACCTACGCGGAGGTGGAACTCACTGCCCGCCGGGTCGCCGCCGGCCTCAACCGTCTCGGCATCCGCAAGGGCGACGTCATCCTCGCGCTCCTGCCCAACTCGCCTGAATTTGTGTTCACCTTCCTCGGGGCCTCCTTCAGAGGCGCCACCACCACCACCGCCAATCCATTCTGCACCACCGCCGAGATCCAGAAGCAGGCACGGGCCGCGGGGGCGCGGCTCGTGGTGACACAATCAGCCTACGTCGACAAAGTCCGAGAGCTGGTGCAAGTCGCTGGAGTCACCATCGTGTGTACCGATGCCCACATCGAGGGCTGCGTACATTTCTCGACGCTGGCTGGGGCCAACGCGGGGGAAATGGCCGAGGTGGAGATACGGCCCGACGACGTAGTCGCCCTACCATACTCCTCGGGGACGACGGGAATGCCGAAGGGGGTGAAGCTGACGCACCGTGGGCAGGTGACCAGCGTGGCGCAGCAGGTCGACGGGGCCAACCCGAACCTGTGGTTGCGGAGAGACGACGTGCTGCTGTGCGTGCTTCCCTTGTTCCACATCTACGCCCTGAACTCGGTTCTTCTAGGCGGGCTTCGCGCGGGATCCGCCATCCTCATAGTGCCGAAGTTCGACGCGGTGGTTCTTCTGGATCTGATTCAGCGCCACCGAGTAACCGTTGCCCCCCTCGTGCCGCCCATCTTGCTGGCCCTCTCCAAGAGGCCCGATCTCGGCAGCTACGATCTCTCGTCTATCCGCATTGTAATGTCCGGGGCAGCCCCCATGGGGAAGGACCTCGAGGATGCCCTTAGCGCCAAGCTTCCCGCCGCCAAAGTCGGTCAGGGCTACGGAATGACGGAGGCCGGGCCGGTGCTCTCCATGTGTCTGGCCTTCGCCAGACAGCCTTTCAAGGTCAAGTCGGGATCGTGCGGGACTGTCGTCAGGAACGCCGAGCTAAAGATCATCGACCCCAACACGGGAGAATCCCTCCCCAGGAACCAAGCCGGAGAGATTTGCATCAGAGGAGCTCAGATTATGATAGGGTATCTGAACGACCCGGAGGCCACGGCGAGGACGATAGACGAGGAGGGCTGGCTACACACAGGAGACGTCGGCTATGTGGACGACGACGACGAGATCTTCATCGTCGACAGGCTCAAGGAACTCATCAAGTACAAAGGCTTCCAGGTCGCCCCCGCCGAGCTCGAAGCCCTGCTCGTCACTCACCCCGGCATCGACGACGCCGCCGTCGTCCCGATGAAAGACGACGCAGCCGGGGAGGTCCCAGTGGCCTTCGTCGTGAGGTCAGAAAGCTCGGCCGTCTCGGGGAACGCGATCATGGAGTTCATTTCTGCGCAGGACATGGAGCTCGAGCGCAGCGGGTTCCTAGATCTCACGCTCTCCGTCACCGACCTGGAACTGCACCTCGGCGCCCAGCCGGCCACGCAGAGCCCCACGCGTGTCTACTCCTGCAACTACTGCCATCGGAAGTTCTTCAGCTCGCAGGCACTAGGCGGGCACCAGAATGCGCACAAGCGTGAGCGCAGCTTAGCAAAGAAGATTCGGGAGCTGCGGGGGAGGGGCGCCGGGCACGCTGCCGCGAGCGGCGGGTGCAGCCGGAGGAGCACTTTCTTGTTCACGGGCCGCGGCGTGGCGGTCTTCAATGACGCGGCGATGTTCGACGGGAGAGAAAGCGTCGGCCTTTCTCCGGGTGGAGCGAAGCCGGTGAGGGCGTGGACGGGGAACTGCGGCGTCCCGGAAGATAAAGAAGAGTTCGACTTGTGCCTCAGGCTCTGA
Protein Sequence:
- >Spipo12G0053800|Spirodela_polyrhiza|C2H2|Spipo12G0053800
MSSMGVAAPPCEEIIYRSKLPDIDIPGHLPVHEYCFENLTAVADRPCIINGQTGDVFTYAEVELTARRVAAGLNRLGIRKGDVILALLPNSPEFVFTFLGASFRGATTTTANPFCTTAEIQKQARAAGARLVVTQSAYVDKVRELVQVAGVTIVCTDAHIEGCVHFSTLAGANAGEMAEVEIRPDDVVALPYSSGTTGMPKGVKLTHRGQVTSVAQQVDGANPNLWLRRDDVLLCVLPLFHIYALNSVLLGGLRAGSAILIVPKFDAVVLLDLIQRHRVTVAPLVPPILLALSKRPDLGSYDLSSIRIVMSGAAPMGKDLEDALSAKLPAAKVGQGYGMTEAGPVLSMCLAFARQPFKVKSGSCGTVVRNAELKIIDPNTGESLPRNQAGEICIRGAQIMIGYLNDPEATARTIDEEGWLHTGDVGYVDDDDEIFIVDRLKELIKYKGFQVAPAELEALLVTHPGIDDAAVVPMKDDAAGEVPVAFVVRSESSAVSGNAIMEFISAQDMELERSGFLDLTLSVTDLELHLGAQPATQSPTRVYSCNYCHRKFFSSQALGGHQNAHKRERSLAKKIRELRGRGAGHAAASGGCSRRSTFLFTGRGVAVFNDAAMFDGRESVGLSPGGAKPVRAWTGNCGVPEDKEEFDLCLRL*