Information report for Sopim04g028560.0.1
Gene Details
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Functional Annotation
- Refseq: XP_010319604.1 — probable lysine-specific demethylase ELF6
- Swissprot: Q6BDA0 — ELF6_ARATH; Probable lysine-specific demethylase ELF6
- TrEMBL: A0A3Q7GUK7 — A0A3Q7GUK7_SOLLC; Uncharacterized protein
- STRING: Solyc04g028560.2.1 — (Solanum lycopersicum)
- GO:0045814 — Biological Process — negative regulation of gene expression, epigenetic
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0032452 — Molecular Function — histone demethylase activity
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >Sopim04g028560.0.1|Solanum_pimpinellifolium|C2H2|Sopim04g028560.0.1
ATGTCAAATAATTGTTATTCTCATGTCTGGGAGGTACTGCAAATTTATCAGAATGATTGGACTTGCCTGTGGAATACTGAATTTCCTCTTCACGCAGTTGACAGAATTCAAAGAAATGGAGTGCATTCCCTTAACCATGATGAAGTGCCTTTGTATGCCCAGCCAAGCGAGTCTGCAGTTTCTCCGCACGAGGGTCAAACATCACAGTCTCATCATCTTTCACATACAGATAATGCAGCCCCAACTTCAAAAGTTGACCTTGAGGAGGAATGTGATGTTTCTAGAGGTCTTGTAAGACCACAGATATTTTGCCTTGAGCACGCAATTCAGACTGAAGAACTGCTGCATTCTAAAGGTGGAGCAAATGTTCTTGTGATCTGTCATTCAGACTTCCAAAAAATTAGGGGACATGCTGCTGTTGTTGCAGAGGAAATTGGCACGGCATTCAAATATAATGAGATTCCGCTGGCTAATGCATCTCAAGGACATCTTTCATTGATTGATCTTGCAATCGGGCAAGAAGAACAAAACAAATGTGCAGAAGATTGGACACTGAAATTAAATATTAATTTAAGGCACTGTGTGAAGGTGCAAAGGAACTGTCCACTTAAGAAATTAAAACATGCATTGATTTTGGGTGGATTATTCTCTGATACAACTCATAGTTCAGATTCCTTGAGTCTCCTCAAGTGGCGGTCCAGAAAAGTGCGCTCAAAGAGAAAGTTGAATCATTCAACAGAAAGTACACTATTTGCAAATGTTCAAATAGCAAAGGTAGTTTCAGGGTCTACAGTGGACATGCAGAATGTCAGAAAGGGGAATATAACAATCCAGTATTCCAGGAAAAAATACAAGCCCAAGGATTGTAGTTCTGCACAGATCTCCAGGGTTTTCATGGACCCATTTAATGTTCCAAAAGAAGTTTCACTTGCAGATGCAAAAATATTGGGAAGTACTCGCCGCCTCAGGGATGAAAATGCAGGCACCGCTTCTTTAGAGGAAAGGTTCTTTAATTCTTCTGATGGGAAACCCCGATTGCGATATGAACATGAGATGCTTTTACAAAACAAAGACCGAAATGGGGATCTCCTTGCACCACAAGAACAAAATTTACTTGTGACGCCATCTTTAATGGTGGAATTCGATGAAGCCCAGGCTGAACTTTGTACGACTGAGAAATTCTCCTTGAAGGATAAAACTTGTGATACAAATTCAAATAGTTGCCATACAGAGAATAAGACCATGGCTGCAGAGACTAGTGGAGAAACAGACATAGCACATGTGCATACTCCTGCATGTACATCCATATATGTGGTTCAAAGCACTGCATATAATGAAAATTTGGAGGAGAATGACATGACGGAAACTGTCATCAGAGATAAATCTGATCATCCGACGGAAGAAGATTTTGAAAGATATCATCATAGTGGGGATGATAAAGCTATTATGACCAGATCTCCCATGCCTGTCAACTCCTCAGGATCTTGCATTGATGGTCCATCAAGAAGTTGTGATAAGAAGATTGAGGATCAAGACTCTCAACAATTTGGCTTAGGTGGCGAGACATCTGATGGTGAAACTTTACTCAAATCTATGGAGCAAGAAATCCAAATTCATAACTCAGTTAAAGACATAGTTGTCTGTGACCATGTCACATCTAGTACTAAGCACTCACAGAGTGGCGATGACATCTCTGAGCAGCATACGAAAGAGTCAAACAATGATACTACTTCTGCAGTATTATTATGGCCGACTGGAAAAAATGGTGGGTGTGAGCTAGACCTCTTAACTGATTATGGATGTAGTGTTAGTGGTTTTGTTAGAAGTCCATGTGAAGGTTTAAGGCCACGAGTTAAGAAAAATGTACGTGGGAGCAGAGTTGAAAGTAAGGAATTTCTTGAGAAGAAACCTATAGGAAATAAGGTAAAAAGGTCTTTATATAGTTCCATCATTCCCAAGGATAAGAAAGAAGAGAAGGGAAGTCATAGGTGTAACTTGGAAGGGTGCTGGATGAGTTTTCAGACAAAGGTAGAGCTGCAACTGCACAAACAGAACCGGTGCCCTGTTGAAGGGTGTGAGAAGAAATTTACCTCTCACAAATATGCTGTGGTTCATCAACGTGTTCATAAAAATGATCGTCCGCTGAAATGTCCATGGAAGGGGTGCACCATGACATTCAAGTGGGCCTGGGCAAGAACTGAACATTTTCGTGTACATACTGGTGAACGGCCATACAAGTGCAAGGTTGAGGGTTGTGGACTGACTTTTAGGTTTGTATCAGGTTATAGTCGGCATAGACGAAAAACTGGGCATTATGTAGATGCGGCCAATTGA
Protein Sequence:
- >Sopim04g028560.0.1|Solanum_pimpinellifolium|C2H2|Sopim04g028560.0.1
MSNNCYSHVWEVLQIYQNDWTCLWNTEFPLHAVDRIQRNGVHSLNHDEVPLYAQPSESAVSPHEGQTSQSHHLSHTDNAAPTSKVDLEEECDVSRGLVRPQIFCLEHAIQTEELLHSKGGANVLVICHSDFQKIRGHAAVVAEEIGTAFKYNEIPLANASQGHLSLIDLAIGQEEQNKCAEDWTLKLNINLRHCVKVQRNCPLKKLKHALILGGLFSDTTHSSDSLSLLKWRSRKVRSKRKLNHSTESTLFANVQIAKVVSGSTVDMQNVRKGNITIQYSRKKYKPKDCSSAQISRVFMDPFNVPKEVSLADAKILGSTRRLRDENAGTASLEERFFNSSDGKPRLRYEHEMLLQNKDRNGDLLAPQEQNLLVTPSLMVEFDEAQAELCTTEKFSLKDKTCDTNSNSCHTENKTMAAETSGETDIAHVHTPACTSIYVVQSTAYNENLEENDMTETVIRDKSDHPTEEDFERYHHSGDDKAIMTRSPMPVNSSGSCIDGPSRSCDKKIEDQDSQQFGLGGETSDGETLLKSMEQEIQIHNSVKDIVVCDHVTSSTKHSQSGDDISEQHTKESNNDTTSAVLLWPTGKNGGCELDLLTDYGCSVSGFVRSPCEGLRPRVKKNVRGSRVESKEFLEKKPIGNKVKRSLYSSIIPKDKKEEKGSHRCNLEGCWMSFQTKVELQLHKQNRCPVEGCEKKFTSHKYAVVHQRVHKNDRPLKCPWKGCTMTFKWAWARTEHFRVHTGERPYKCKVEGCGLTFRFVSGYSRHRRKTGHYVDAAN*