Information report for Sopen01g003420.1
Gene Details
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Functional Annotation
- Refseq: XP_015062713.2 — protein indeterminate-domain 4, chloroplastic-like isoform X1
- Swissprot: Q8GYC1 — IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
- TrEMBL: A0A0V0IN59 — A0A0V0IN59_SOLCH; Putative zinc finger protein MAGPIE-like
- STRING: XP_009786293.1 — (Nicotiana sylvestris)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >Sopen01g003420.1|Solanum_pennellii|C2H2|Sopen01g003420.1
ATGTCAGGAGAACCTTCATCAATTATGTTTCTTGCAATGAGAGAAGAACAACAACAACAGCAACAACAACAACAACACGAAGTTCTTCTTCATCATCAACAACAACAACAACAACATCATGGCGAACCGCCTTCTTCATCAACAATTCAATCACAACAACAAGCAACAAAAAAGAGAAGAAATCAGCCTGGAACACCAAATCCAGATGCAGAAATAATAGCACTATCTCCCAAGACCCTAATGGCAACAAATAGGTTTGTATGTGAGGTATGCAACAAAGGTTTTCAAAGAGAACAAAATTTACAACTACATAGAAGAGGACATAATTTGCCTTGGAAATTAAAACAAAAGAGTACAAAAGAGGTTAAGAGAAAAGTTTATTTGTGCCCTGAGCCAAGTTGTGTACATCATGAACCTTCAAGAGCACTTGGTGATCTTACTGGGATTAAGAAACATTATTCAAGAAAACATGGTGAAAAAAAATACAAGTGTGAGAAGTGTTCCAAGAAGTATGCTGTCCAATCTGATTGGAAAGCTCATACTAAGACTTGCGGTACGCGCGAATATCGATGTGATTGTGGCACCCTTTTCTCGAGGCGTGACAGTTTCATCACTCATAGAGCCTTTTGTGATGCATTGGCACAAGAAAGTGCAAGAAATCCACCAAGTTTGAGTAGCATTGGGAGTCATTTATATGGAAGTAGCAACAACAATAATATAAGTTTAGGCGGCCTCTCGAAATTAAATTCCCAAATTCCAGATCATCATGAAATGCTTCATTTCGGAGGTAGCAACAACAACAACACTAGTGGCGGGGCCCACCACCATCATCATCAGAACCAGTTTGACAACAACAACAACAACAACAACAACAACAACCTCATTGGCTCGTCAGCTTTTCGTCCTTCAACTTCCTTTTTCCAACTTCCAGCTGATCAAACAAGTCATCAAGATTACGGGGTGATCAATAATAACAAATCATCAATCCATGGACTAATGCAACTTCCCAATCTCCACAACAACAACGCGAGTGTTGCTACTGGTTCTTCTAGCATATTTAACCTGAATTTCTTCCAGAATAACAACAACAACAACAACAACAACAACATCGTTGATAATGATCATAATAACACTATTTCTGGAGGTCTTGGTGGATTATTACTTCCTAGTCCTCATCAATTTAGCAACAACACTAGCGGTGAAGGTTCAAATAATTCATCGAATATTTTCTCAAGTGGTACCATTCTGAACGATCATCATCACCATCATCATCATCATATGAGTTCATCGATTCCTTCTCTTTATGTCTCATCATCACCGGCCCCACCTATGTCAGCCACCGCTCTCCTCCAAAAAGCGGCTCAGATGGGTTCTACTACTAGTTGCAACAATAGTAGTACTAGTGCTTCATTGCTTAAAGCATTTGGCTCTGTTGCTGGTGTTGGTGGTTCATCGTCTAGCATGACAAAATCTGATCTTCATCCACCGCCAGCTGTCAATTTTGGCGGTGTTTTCGGCCATGAGGACCCTATGGGAGCTGGAAATCATCTTCATGGCCTAGTTGTTAATGCTTACGGTCCACAAGACCAGAATCAAGACTATGGAGGAGTGGTAGGAGGGTACAATACCAACAACAACAACAAGATGAATAGTTATGATCAACCACCACCACAAAAGAAGCAAATGATTGGTAAACCCTTTTCAATGGACATTGCGATGGGTGAAGAAGCTAATAGGTTGACAAGAGATTTTCTTGGAGTTGGAGAAATTGTGAGAACTATGAGTGGTGGTGGTGGAGGATTTAGTAGCAGCCAACAACAAATGAGTTCATTGGATAATAATAATAATAATAATAATTTTGAGAGTAGAAAAAATCAAAGTCATCATCATCAACAACCTTTTGGAGGTGGCACTTTTCAATGA
Protein Sequence:
- >Sopen01g003420.1|Solanum_pennellii|C2H2|Sopen01g003420.1
MSGEPSSIMFLAMREEQQQQQQQQQHEVLLHHQQQQQQHHGEPPSSSTIQSQQQATKKRRNQPGTPNPDAEIIALSPKTLMATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPSCVHHEPSRALGDLTGIKKHYSRKHGEKKYKCEKCSKKYAVQSDWKAHTKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPPSLSSIGSHLYGSSNNNNISLGGLSKLNSQIPDHHEMLHFGGSNNNNTSGGAHHHHHQNQFDNNNNNNNNNNLIGSSAFRPSTSFFQLPADQTSHQDYGVINNNKSSIHGLMQLPNLHNNNASVATGSSSIFNLNFFQNNNNNNNNNNIVDNDHNNTISGGLGGLLLPSPHQFSNNTSGEGSNNSSNIFSSGTILNDHHHHHHHHMSSSIPSLYVSSSPAPPMSATALLQKAAQMGSTTSCNNSSTSASLLKAFGSVAGVGGSSSSMTKSDLHPPPAVNFGGVFGHEDPMGAGNHLHGLVVNAYGPQDQNQDYGGVVGGYNTNNNNKMNSYDQPPPQKKQMIGKPFSMDIAMGEEANRLTRDFLGVGEIVRTMSGGGGGFSSSQQQMSSLDNNNNNNNFESRKNQSHHHQQPFGGGTFQ