Gene Details:

• Gene ID: Solyc10g085560.1.1
• Gene Family: C2H2 family
• Description: C2H2 family protein
• Species: Solanum lycopersicum
• Source: C2H2 family gene from PlantTFDB

Protein Features:

• Pfam:  PF10248
• SuperFamily:  SSF103025
• TIGRFAMs:  TIGR03317
• Gene3D:  G3DSA:3.40.50.1010
• SuperFamily:  SSF57667
• PROSITE profile:  PS50157
• Gene3D:  G3DSA:3.30.160.60
• PROSITE pattern:  PS00028
• Pfam:  PF01936
• InterPro:  IPR019376    IPR017703    IPR029060    IPR007087    IPR013087    IPR021139

Annotation Proteins:

• Refseq:  XP_004249622.1  — histone deacetylase HDT1
• Swissprot:  Q6V9I6  — HDT1_SOLCH; Histone deacetylase HDT1
• TrEMBL:  A0A3Q7JGU1  — A0A3Q7JGU1_SOLLC; Uncharacterized protein
• STRING:  Solyc10g085560.1.1  — (Solanum lycopersicum)

Gene Ontology:

• GO:0009294  — Biological Process — DNA mediated transformation
• GO:0009944  — Biological Process — polarity specification of adaxial/abaxial axis
• GO:0010162  — Biological Process — seed dormancy process
• GO:0045892  — Biological Process — negative regulation of transcription, DNA-templated
• GO:0005618  — Cellular Component — cell wall
• GO:0005730  — Cellular Component — nucleolus
• GO:0005739  — Cellular Component — mitochondrion
• GO:0005774  — Cellular Component — vacuolar membrane
• GO:0005829  — Cellular Component — cytosol
• GO:0046872  — Molecular Function — metal ion binding

Family Introduction:

• Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.

Literature:

• AtZFP1, encoding Arabidopsis thaliana C2H2 zinc-finger protein 1, is expressed downstream of photomorphogenic activation.   DOI:  10.1023/a:1006352809700 ;  PMID:  10794528

Sequences: