Gene Details:

  • Gene ID: Solyc01g005060.2.1
  • Gene Name: LOC101262550
  • Gene Family: C2H2 family
  • Description: C2H2 family protein
  • Species: Solanum lycopersicum
  • Source: C2H2 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_004228757.1  — protein SHOOT GRAVITROPISM 5 isoform X2
  • Swissprot:  F4IPE3  — IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
  • TrEMBL:  A0A3Q7E897  — A0A3Q7E897_SOLLC; Uncharacterized protein
  • STRING:  Solyc01g005060.2.1  — (Solanum lycopersicum)

Gene Ontology:

  • GO:0009590  — Biological Process — detection of gravity
  • GO:0009959  — Biological Process — negative gravitropism
  • GO:0009965  — Biological Process — leaf morphogenesis
  • GO:0010031  — Biological Process — circumnutation
  • GO:0010601  — Biological Process — positive regulation of auxin biosynthetic process
  • GO:0048444  — Biological Process — floral organ morphogenesis
  • GO:2000012  — Biological Process — regulation of auxin polar transport
  • GO:2000904  — Biological Process — regulation of starch metabolic process
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003676  — Molecular Function — nucleic acid binding
  • GO:0046872  — Molecular Function — metal ion binding

Family Introduction:

  • Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.

Literature:

Sequences:

CDS Sequence:
  • >Solyc01g005060.2.1|Solanum_lycopersicum|C2H2|Solyc01g005060.2.1
    ATGTTGGATAATTCTTCTTCTTCAGAAGCTCTTATTAATTCTGGGGATTCTAATAGAAGGAAAAGAAGACCAGCTGGTACACCAGATCCAGATGCAGAAGTGGTCTCACTTTCCCCCAAAACACTATTGGAATCGGATAGATATATATGTGATATTTGTGATCAAGGTTTTCAAAGGGATCAAAATTTGCAAATGCATAGGAGAAGACACAAAGTGCCATGGAAATTAGTGAAGAGAGAAATTGAAGTTAAAAAGAGAGTATTTGTATGTCCAGAGCCAAGTTGTTTACACCATGATCCTTGTCATGCCCTTGGTGATCTTGTTGGGATAAAGAAACATTTTAGAAGAAAACATAGTGATAATAAGCAATGGATTTGTGATAAATGTGGAAAAGCTTATGCTGTTCAATCGGATTACAAAGCACATCTCAAGACTTGTGGTACTAGAGGACATTCTTGTGATTGTGGTCGCGTTTTTTCAAGAGTGGAAAGTTTTATTGAGCACCAAGACAGTTGCACTATAAGGAGAATTAGGCCAAGATTGCAACCAATTACAGCTGCTTGTTCTTCAAGTGACACAAATTTACCAAAATTAGCCATAATGCCTTTACCAAAAAACAGTACAAATTTAGAACTTGGCCTAAAAAGTAGTAGTCATCATGAAAATACTATTGAAGAAGCACATTTGAAATTATCCATTGGATCATCATCACCAAATCATGAGGTACTTAATTTGGTTATGGCTGACAAGGCCTACGCTGAGGAAGCACGTAGGAACGCGAAGAGGGAGATGGAATACGCGGAGAGGGAATTCGAGAATGCAAAGAGAATTAGACAACAAGCACAAGCTGAAATTGAAAGAGCAAAACAATTGAAAGAGGAAGCTATTAACAGAATAAGTTCATCAATTTTGGAAATTACTTGTCATGCTTGCAAAAATAAGTTTCAAACAATTGATAATAATGTTGACTCTTCTCCACCTATGAGTTACATGTCTTCAGATGGTGAAAGAGAGCAATAA
Protein Sequence:
  • >Solyc01g005060.2.1|Solanum_lycopersicum|C2H2|Solyc01g005060.2.1
    MLDNSSSSEALINSGDSNRRKRRPAGTPDPDAEVVSLSPKTLLESDRYICDICDQGFQRDQNLQMHRRRHKVPWKLVKREIEVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSDNKQWICDKCGKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCTIRRIRPRLQPITAACSSSDTNLPKLAIMPLPKNSTNLELGLKSSSHHENTIEEAHLKLSIGSSSPNHEVLNLVMADKAYAEEARRNAKREMEYAEREFENAKRIRQQAQAEIERAKQLKEEAINRISSSILEITCHACKNKFQTIDNNVDSSPPMSYMSSDGEREQ*