Information report for Sobic.003G394900.1.p
Gene Details
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Functional Annotation
- Refseq: XP_021310712.1 — lysine-specific demethylase JMJ705
- Swissprot: Q5N712 — JM705_ORYSJ; Lysine-specific demethylase JMJ705
- TrEMBL: A0A1B6Q7Q4 — A0A1B6Q7Q4_SORBI; Uncharacterized protein
- STRING: Sb03g043210.1 — (Sorghum bicolor)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0040010 — Biological Process — positive regulation of growth rate
- GO:0045815 — Biological Process — positive regulation of gene expression, epigenetic
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0071558 — Molecular Function — histone demethylase activity (H3-K27 specific)
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Oryza sativa: LOC_Os01g67970, JMJ705
- Panicum virgatum: Pavir.9NG271400.1.p, Pavir.5KG706100.1.p
- Saccharum spontaneum: Sspon.03G0028610-3D, Sspon.03G0028610-1P, Sspon.03G0028610-1B
- Setaria italica: SETIT_000062mg, Seita.5G420700.1.p
- Setaria viridis: SEVIR_5G426200v2, Sevir.5G426200.1.p
Sequences
CDS Sequence:
- >Sobic.003G394900.1.p|Sorghum_bicolor|C2H2|Sobic.003G394900.1.p
ATGGCGTCCTCGCAGGGGGAGCCGGTGCCCCCGTGGCTCAAGTCCCTCCCTCTGGCGCCCGAGTTCCGCCCCACCGCGGCCGAGTTCGTCGACCCCATCGCCTACCTCCTCAAGATCGAGCCCGCCGCGGCGCCCTTCGGCATCTGCAAGATCGTGCCACCGCTCCCGCCGCCGCCCAAGCGGGCCACGCTCGGTAACCTCTCCCGCTCCTTCGCCGCGCTCCACCCGGACGATCCCACCCCGACATTCCCCACCCGGCACCAGCAGCTGGGCCTCTGCCCGCGCCGCCCGCGCCCCGCGCTCAAACCCGTCTGGCTCTCCTCCCACCGCTACACGCTCCCCAAGTTCGAGGCCAAGGCCGGCGCTTCCCGGAAGGCGCTGCTCGCGCGCCTCAGCGTCCCCGCCACCAAGCAGCTCTCGCCGCTCGACGTCGAGGCGCTCTTCTGGCGCTCATCCGCCGACCGCCCTGTCGTCGTGGAGTACGCCAGCGACATGCCTGGCTCCGGGTTCGCCCCCTGCGCCGCACGCCCGACGCAGCTTCCCGCGGCGAACGTGGGCGAGACGGCGTGGAACATGCGCGGCGTGGCAAGGAGCCCCGCCTCTCTGCTGCGCTTCGTGCGGGAGGAGGTGCCCGGGGTCACGTCGCCGATGCTCTACGTCGGCATGATGTTCAGTTGGTTCGCCTGGCACGTCGAGGACCACGATCTGCACAGCCTCAATTACATGCATTACGGTGCTCCCAAGACGTGGTACGCGGTGCCGCGCGACGCTGCACTCGCCTTCGAGGAGGTGGTGCGCGTCCATGGGTATGGCGGGGAGGTGAACTCCTTAGAAACCTTTGCAATGCTGGGTGATAAGACGACGGTGATGTCCCCTCAAGTGCTCGTGGATTCAGGGATTCCCTGCTGCAGATTAGTTCAGAATGCAGGGGAATTCGTGGTTACTTTTCCCAGAGCATATCACAGCGGGTTCAGTCATGGGTTCAATTGTGGGGAAGCATCAAATATAGCCACTCCTGAATGGTTGAGAGTTGCAAAAGAGGCAGCAGTCCGGAGAGCTTCCATCAATCGTCCTCCCATGGTTTCGCACTATCAGTTGCTCTATGAACTTGCACTGTCATTGTGCTTGAGGGATCCATCAAATGGAACTATGGAACCACGAAGCTGTAGATTGAAGGAGAAGAAGAAAAGTGAAGGGGACCAATTGATCAAAAAGATATTTGTGCAAAATGTTATTGAAGACAATAAACTGCTTGGTCATTTTCTGAGTGATGGGTCTTCTTGCATTATTCTTCCAGTCAATTACAGTGATGGCTCTCCACTATCAACTTTGCTCTCAAAATTTCAGTCAACAACTGATTCCAGGATATCGCATGACCAGTGCAGTAAGACAGAAGCTCCGAAAGACTCAAGATGCTTACCAAAGGATCAGGCTGACAAGAACTGGGAATTGTCGTCATCCAACAAAATATCATTGTCAGTCTGCTCGGGAAAGACAGTCCCACCTACAACGTGCATATATGACTGTGCAAACATGTCTGCCTCATCATACACACATAATACAGAAAATAACAAGGGGGGTATGAACAGTGCTGCTGGTCTTTTAGACCAGGGTTTATTATCCTGTGTCGCTTGCGGGATTTTGAGTTTTTCATGTGTGGCAGTGATCAAACCAAGGGAGTGTGCAGCAAAATGGTTAATGACTGCTGATTCTAGTTTGATCAACGATCGACTTGCTAGTTCTGGAGAGCATCATATGATAGATGGGTTACAAGGTGGGAGGACAACTGGTGGAATTTTACGATCAGATTCTGAAATGAATGGCAATAGTATAATTTCTGATGCTGATGATGTGCCTCTCAATGGGTGTTCTGCTCTTGATCTTTTGGCATCAGCTTATGGAGATCCATCAGATTCTGATGAAGATGTTATGAACAAAAAAATTCAGATTCCTAATGTCTCCAACGAATTAATAAATCACACAGTTGAATCACAACCCAATACCTCAAATAATGGTGATTGTGATGGAACAAAGGTGTCCTCAAGTAGTAAAGAAAGCCAACAAGGACCAACTTCCCAGAATTCAAAGTGTATTGGTAACTCAAACACCTTGAATGGACCAAAAGGTGTTCGCACTAGAAATAAGGATCTACTTAAGATGGTGCTTTCTGAAGGTTTTCAACCAAAAGATATATATTCAGAAACGCATAAGAAGGTTCAGTGTGAACCATCAAGCTCAAACAAGACTTCAACAGAGAGCCCTTGCAGCACAGAATATCATGTTAGCCATAACAGTGCTACAATCTGTATGGACAACAACAGAGGCTCTATGACTATGGTGAACAACTTAGTTACATCAGTTGTGAAACCTGATAAGGATTCATCAAGAATGCATGTATTTTGTCTTGAACATGCTATTGAGGTTGAGAAGCAACTTCAAGCTATTGGTGGTGCTGATATTTTTCTTCTATGCCGTCCAGAATATCCCAGAATAGAAGTAGAAGCAAGATTGCTGGCTGAAGAAATGGAATTTGTGTATGATTGGAAGGATATTCTTTTCAAAGAGGCCACTATCGAGGATAGGGAGAAGATACAGGAAGTTGTGCAGGATGAGGAAGCAATACCAACAAATAGTGATTGGGCTGTAAAACTGGGCATTAATCTTTACTATAGTGCTAATCTTGCTAAGTCTCCTTTATACAACAAACAAGTGCCATACAATCGAGTTATCTATGAGGCATTTGGCTATGGTTCTCCCAATGATTCACCAGTAAAGCTGAAGACTTATTCCAGAAGGCAAGGCAGGGCGAAGAAAATAGTCTTGGCTGGCAGGTGGTGTGGGAAAGTATGGATGTCAAACCAGGTCCACCCATACCTGGCTGACAGAATCAAAATTCATGAGCCAGAAGAAACCGATGAAACTTTTCCTTCTGATCAGAAATCAAATGCTGAACCTGTTGAAGATTCAAGTAGACAGGCAGCCTCCACAAGAAAGAGTAGCAGCAGAGCAATTGAAGGAAAAATAAGCAAGAGGGAGAAAGAATCATTGGAGAAAGCTAATGCCAAGAAGCCAAAAATTACTGAAGAGGATAATTCCAAATCTTTAGAGGGTACTGCTGAAGCCTCCACACAGAGCAGAACAGCTCTAGAAAAAACAAGCAGGAAGGAGAAAGAACATGTGGAGAAAGCAAATACCAAGAAGCTCAAACATACTGAAAAGGTCTCGGAAGCAATAAAAGGTCCTTCAGAAGCCTCCTACCCCGCACCAGCTGGGATGGTAGTCCGCAGTAGCTCTAGGATTGCCAATAGGAAAAGCATGTTGAAATCAAGGATGGACGAAGAGGATATTGGCTCAACCAACCGTCCAAAGTCAAAGGTTGAAGACGACAAAGATAATCCTGCTGGCCGTTCAACAGCAAAATCACTAAGGCAAAAGACTAAACTAGATGCAAAGAAGAAAACAAAGGAAACTAGAGTAGAAAAGCGAAAAGCTCCTAGTCCAGCTTCTCAGAAGGATGAAGAAGAGCAGTCGTATGAGGGGTGTTCTATCACTAAACAACGGTTGTCTTTACGTAAGAAGGGGGCTAAAATAGAAGAAAAGCAGCAGCAAATGGAGAAATCTAGATACAGAGGAAGGGCTCCCCCAAGTTCTCCAAAGAGTAAGGAAGAGTATGCGTGCGACGTTGAAGGTTGTTCCATGAGTTTTGGCACAGAAGAGGCGCTGTCTCTGCATAAGAATGATATCTGCCCAGAGAAGGGCTGTTGCAGGAAGTTCTTCTCGCACAAGTATCTGCTGCAGCACCGTAAGGTTCACACCGATGACCGTCCACTGAAATGCCCGTGGAAGGGCTGCAGCATGGCGTTCAAGTGGCCGTGGGCTAGGACAGAGCACATGAGGGTTCACACGGGAGACAGGCCCTATGTTTGCCCTGAACCAGAGTGCGGGCAGACATTCAGGTTCGTCTCTGATTTCAGCCGCCACAAGCGCAGGACAGGCCATGCAGGCATGCCAGCCAAGAAAGCGAAAGCAAAGAAGTGA
Protein Sequence:
- >Sobic.003G394900.1.p|Sorghum_bicolor|C2H2|Sobic.003G394900.1.p
MASSQGEPVPPWLKSLPLAPEFRPTAAEFVDPIAYLLKIEPAAAPFGICKIVPPLPPPPKRATLGNLSRSFAALHPDDPTPTFPTRHQQLGLCPRRPRPALKPVWLSSHRYTLPKFEAKAGASRKALLARLSVPATKQLSPLDVEALFWRSSADRPVVVEYASDMPGSGFAPCAARPTQLPAANVGETAWNMRGVARSPASLLRFVREEVPGVTSPMLYVGMMFSWFAWHVEDHDLHSLNYMHYGAPKTWYAVPRDAALAFEEVVRVHGYGGEVNSLETFAMLGDKTTVMSPQVLVDSGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEASNIATPEWLRVAKEAAVRRASINRPPMVSHYQLLYELALSLCLRDPSNGTMEPRSCRLKEKKKSEGDQLIKKIFVQNVIEDNKLLGHFLSDGSSCIILPVNYSDGSPLSTLLSKFQSTTDSRISHDQCSKTEAPKDSRCLPKDQADKNWELSSSNKISLSVCSGKTVPPTTCIYDCANMSASSYTHNTENNKGGMNSAAGLLDQGLLSCVACGILSFSCVAVIKPRECAAKWLMTADSSLINDRLASSGEHHMIDGLQGGRTTGGILRSDSEMNGNSIISDADDVPLNGCSALDLLASAYGDPSDSDEDVMNKKIQIPNVSNELINHTVESQPNTSNNGDCDGTKVSSSSKESQQGPTSQNSKCIGNSNTLNGPKGVRTRNKDLLKMVLSEGFQPKDIYSETHKKVQCEPSSSNKTSTESPCSTEYHVSHNSATICMDNNRGSMTMVNNLVTSVVKPDKDSSRMHVFCLEHAIEVEKQLQAIGGADIFLLCRPEYPRIEVEARLLAEEMEFVYDWKDILFKEATIEDREKIQEVVQDEEAIPTNSDWAVKLGINLYYSANLAKSPLYNKQVPYNRVIYEAFGYGSPNDSPVKLKTYSRRQGRAKKIVLAGRWCGKVWMSNQVHPYLADRIKIHEPEETDETFPSDQKSNAEPVEDSSRQAASTRKSSSRAIEGKISKREKESLEKANAKKPKITEEDNSKSLEGTAEASTQSRTALEKTSRKEKEHVEKANTKKLKHTEKVSEAIKGPSEASYPAPAGMVVRSSSRIANRKSMLKSRMDEEDIGSTNRPKSKVEDDKDNPAGRSTAKSLRQKTKLDAKKKTKETRVEKRKAPSPASQKDEEEQSYEGCSITKQRLSLRKKGAKIEEKQQQMEKSRYRGRAPPSSPKSKEEYACDVEGCSMSFGTEEALSLHKNDICPEKGCCRKFFSHKYLLQHRKVHTDDRPLKCPWKGCSMAFKWPWARTEHMRVHTGDRPYVCPEPECGQTFRFVSDFSRHKRRTGHAGMPAKKAKAKK*