Information report for Sevir.9G542600.1.p
Gene Details
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Functional Annotation
- Refseq: XP_004985676.1 — lysine-specific demethylase SE14
- Swissprot: Q10RP4 — SE14_ORYSJ; Lysine-specific demethylase SE14
- TrEMBL: K4A4T2 — K4A4T2_SETIT; Uncharacterized protein
- STRING: Si033886m — (Setaria italica)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0045814 — Biological Process — negative regulation of gene expression, epigenetic
- GO:0048577 — Biological Process — negative regulation of short-day photoperiodism, flowering
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0032452 — Molecular Function — histone demethylase activity
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi1g74997.1.p, BRADI_1g74997v3, Bradi1g74997.2.p
- Panicum virgatum: Pavir.9NG745400.1.p, Pavir.9KG592000.1.p, Pavir.9NG745400.2.p
- Saccharum spontaneum: Sspon.01G0002960-2B
- Setaria italica: Seita.9G538300.1.p, SETIT_033886mg
- Zea mays: AC149475.2_FGP005
Sequences
CDS Sequence:
- >Sevir.9G542600.1.p|Setaria_viridis|C2H2|Sevir.9G542600.1.p
ATGTCGCCGCCGCCGGCGGTGGAGGCGGGCGGCCCCGGGGAAACCCCGGTGCCGGCGTGGCTCCGCGGCCTCCCGCGGGCCCCGGAGTACCGCCCCACGGAGTCGGAGTTCGCCGACCCCATCGCCTTCCTCTCCCGCGTGGAGCGCGAGGCGGCCGCCTACGGCATCTGCAAGGTCATCCCGCCCTACCCGCGCCCCTCCCGCCGCTTCGTCTTCGCTCACCTCAACCGCTCCCTCACCTCCTCCTCCGACGCCGCCAACCCGGCCCTCTCCGGCTCCTCCTCCAGCACTGCCCCCTCGCGGCCGGAATCCGCCGCGGTGTTCACGACCCGCCACCAGGAGCTCGGCACCCCGCGGCGTGGGCGCCCGCCGCCGCAGGTGCTAAAGCAGGTGTGGCAGAGCGGCGAGCAGTACACGCTCGAGCAGTTCGAGGCCAAGTCCCGCGCCTTCTCCAAGATCCACCTCGCCGGGCTTCGCGAGCCAACTCCACTAGAGGTGGAATCCCTCTTCTGGAAGGTGTCTGCGGACCGGCCTATCTATATTGAGTACGCGAATGACGTTCCAGGGTCTGGCTTTGCCGCCCCACCGCAGTCCCGGCACCGGAAGAAGCGGAGACGGGAGGGTGATCAGGTGGAAGAGGGGGAGAAAGGTTCTGGGTGGCGGCTGTCAGGAAGCCCATGGAACCTCCAAGCAATTGCACGGGCTCCTGGGTCGCTCACACGATTCATGCCGGATGATGTTCCCGGGGTTACCTCGCCAATGGTGTACATTGGGATGCTGTTTAGTTGGTTTGCATGGCATGTCGAAGATCATGAGTTGCACAGTCTCAACTTCCTCCACACCGGTGCACCCAAGACGTGGTATGCAGTCCCTGGGGACCGAGCCTCAGAGCTAGAGGAAGTTATCCGTGTGCATGGATATGGAGGCAACCCTGACCGCCTTGCATCGCTGGCAGTGCTTGGGGAGAAAACAACATTGATGTCCCCAGATGTTCTCGTGGCCCGTGGTGTGCCGTGCTGTAGATTAGTACAGTATCCTGGAGAGTTTGTCGTGACGTTCCCCAGGGCCTACCACATTGGGTTTAGCCATGGATTTAATTGTGGAGAGGCTGCCAACTTTGCAACTCCCCAATGGTTAAAGTTTGCAAAAGACGCTGCTGTTCGAAGGGCTGTAATGAATTATCTCCCGATGCTCTCTCACCAACAGCTCCTGTACTTGCTAGCAGTATCTTTTATAACCAGAACTCCGAGCGTGTTGTCTGGAATTCGAACTTCTAGGTTGAGAGATCGAAGAAAAGAAGAAAGAGAACTGCTGGTCAAACAGGAATTCTTGCAGGACATGATTAATGAAAACAAGCTTTTGTGTTCTTTCTTGAAAAAGAAATCAATTGATAATGTTGTGCTCTGGGAGCCTGACTTGCTACCATCTTCTACTGTTCTAAATTCCTGCTCTTCTGGCTCAAAAGCTCCTGAGAAGAAGTCTGAGGATGGTTGCAGAATTGAATCTAGCCAATGCAACCACAAAGATAACAGCTCACCTGATGGTAGTGCACTTATGACTGGGGCACAGACTAAATGCACGTCTGCGAATAGCAAATCATCCGATGCTGCATCTGCTTCTGTGGAAAAGTCCGATGCTGACATCGATGATGAGGATGACCTGCCTTTCGATTTGAGCATTGATTCTGGCTCATTGACCTGTGTTGCTTGTGGAATTCTTGGCTATCCATTCATGGCAATTCTGCAACCTTCCAAAGAAGCATTGGAAGGGATTTCCCCTGTTCATAGGGAAAGATCCAAGCTGAGTTTTGAAAAAGAAAAAAATTCAAATGTATTTCCTTGCTGTCCTGCTGGTGGCAATTTCGGATCTTCCTTTGTTCCCAATAGAACTTCCTGCTCTGTGGAACAATCATGTCTGGCTACTCCTGTGGAGCAGACTAACATCAACCCTCAGAATGTAAATTCACATAAAGATATTTCTTTAACGGAGAATGAACTTGCTGGACCTGTGCAACAACACAGTGATAGTTCACATTCTTGCAGAAGTGAAAATACTCTTCATTCATGCAGTAACAGGGGAAAATCTGATAATACTATACCTAAAGACAGTCTTGGCCCAGAAGTAAAACAAACAGGCAGAGGTGACATTGATGTACAGGCTGTAGAAAGTTGTGATGGCACTATTAGCTGGAATACAAGTTCTACCTTTGCACGGCCCAGAATCTTTTGCTTGCAGCATGCCCTTGAGATTGAAGAGTTGCTTGAGGGCAAAGGTGGTGTCCGTGCCCTCATTATTTGCCATTCAGATTATATCAAATTAAAAGCGCTTGCAATATCAATAGCTGAGGAAATTGAGTTTCAGTTTGACTGTACAGACGTTCCTCTTGCAAATGCATCCAAGTCTGATTTACATCTAATCAACATTTCAATTGATGATGAGGGGCATGAGGAAGATGGAAGGGACTGGACATCACAGATGGGTCTAAACCTGAAATATTGTGCCAAGCTTAGGAAAGAGACATCAGGGATTCGGGATCAATCTCCTTTGTCAGTTTGGGAACTATTTTCCAACCCTTCGCCTGTTTCAGTTGTTCCTAATCTCAAGTGGCTCTGCAGAAAAGCGCGGACACCATACAAAGTCATTGGTATTATTACCAGCTCTGGCACCTCGGCAGCTGCTGAGGAGGTCAAGCCTGAAGTGAAGAAAGAAACATGCACTACTGGAAATGGAAATGTTCATGAGGATGACAGTAGGCAACATATTTCCCAACAAAGTGGCCTCGTGCAACCAAGTGGGCTGCATGATTCTGATGATAGAGAGAATAAATCGTCGTGTTTGGAGGAGAATGACCATGACAGACATTGTCTTATTGATATCCCTATTGCTGTTGCTGAATATCCTATGAAGCACCAAGTTTGTGAGGGTGCAGTTGGTGTTAGTACGTGCAATGACACTATTTGTTCATCAGATTCCCAGGATTCATCTCCACTTGCCACATCACCAGTTGATGTTACAAGATATCAAGGATGTATACAATCAACTGAGTTGAGTAGTTCATCAACCTTTTCTGTTCGACAGTTCCTTAATGATGAAAGTACCTCTGTGGAAGGAAGCATGAACTGTATGAGCAATCATGAGTACTTACAATCTCAGGATGTTACTTTACAGTGCAGAGATGAATGCTTACAAGTTCAACAAGATCAGGAGGAGATGAGACTTTGCAATAATTCTAACAGGACATCAGTTGATCCATGTCTTAAGGAAGATTTGGTTATTTCAGAAGAAAAGCATGGGAGTAATGTGTCAGCAGCCCTTGAAAATGAACACGACTGTGCGAAGACATCTAAATGTTCTTATAAAACTAATGAATCTGCAGCAGTTAATCAATTGAAGACTCATGATGCGGGTGCTGTTCCAGAGAAACAAAAGTCAAGCTGTGATGAGATGACCTGTGGTAGTGCTGATGTACAATGCAGTATAACCTTCGGCTGTCTTGGCTCTGCTGATGTTCCTGGTTCAACTCAGCCTCAGTTGGTTCCGCATGATTTAATGAGTGACGAGCTGCAGGTTGATAGCCACCATTGTGTTGTCAAGGCCGTCGAGCCGAAGAGCAATAATTCTGCTAAGCATGAATCTCCACAGATAGATAACCTCATTTTAGAGGATGCTCAAGCTGCTGCAACGACTGCGATCCCTGGACATGATGGAAAATCTGTCCACGCTGGATCAAATTCCTTTGATATTTTACTTGGAGCTCTGGCTGAAGAGTCCAAGGTAACAGATGCTCCTGGGAAAGATGAGGTTGGGAAAGCTTCCTTGACATTAATGACACTGGCTAGCAATGACCACTCTGCAGATGAAATTGCAGAAGGCAAAGTTGTCGAGGTGGCAAAAACGAACACAATTTTCGGAGCAACAAAAGATGATGAACAAGTTGATCGGCCACATGACTTTCATTTATCAGATGTGGTGTCTAGAAGCATTGGAAACTCAAATAGAACTGAGATCATATGCTACGTCAGACGCAAACACAAAAGAAAGAAGGATTCACAGTCAAATACTGATAGTTCACAAAGTCTTGGGAATTTTATCCGCTCCCCGTGCGAGAGCTTGAGGCCAAGGACTAAACCTGCAGTAGTTGAAACTATAGAAGTTTCTGCTGGTAAAAAGGGCAAGAGGGCAAAAGTGGTATTATTTCAGTGTGATATTGATCTTTGTGACATGACATTTGAGACTAGAGCCGAACTTAATGCCCACAAGCGCAATATTTGTACTGACGAATCATGTGGCAAGCGTTTCAGTTCCCACAAATACTTGAAGCGTCATCAGTGCGTCCACAGTGATAAAAGGCCATTCAAGTGTCCCTGGGATGGTTGCGAAATGACTTTCAAGTGGCTGTGGGCTCAGACCGAACATGTCAGGGTGCACACAGGAGAACGGCCTTATAAGTGCTCAGCACCTAGCTGTGGCCAGACTTTTAGATATGTCTCAGATTACAGCCGTCATAGAAAGAAGTTTAATCATTATTGA
Protein Sequence:
- >Sevir.9G542600.1.p|Setaria_viridis|C2H2|Sevir.9G542600.1.p
MSPPPAVEAGGPGETPVPAWLRGLPRAPEYRPTESEFADPIAFLSRVEREAAAYGICKVIPPYPRPSRRFVFAHLNRSLTSSSDAANPALSGSSSSTAPSRPESAAVFTTRHQELGTPRRGRPPPQVLKQVWQSGEQYTLEQFEAKSRAFSKIHLAGLREPTPLEVESLFWKVSADRPIYIEYANDVPGSGFAAPPQSRHRKKRRREGDQVEEGEKGSGWRLSGSPWNLQAIARAPGSLTRFMPDDVPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGAPKTWYAVPGDRASELEEVIRVHGYGGNPDRLASLAVLGEKTTLMSPDVLVARGVPCCRLVQYPGEFVVTFPRAYHIGFSHGFNCGEAANFATPQWLKFAKDAAVRRAVMNYLPMLSHQQLLYLLAVSFITRTPSVLSGIRTSRLRDRRKEERELLVKQEFLQDMINENKLLCSFLKKKSIDNVVLWEPDLLPSSTVLNSCSSGSKAPEKKSEDGCRIESSQCNHKDNSSPDGSALMTGAQTKCTSANSKSSDAASASVEKSDADIDDEDDLPFDLSIDSGSLTCVACGILGYPFMAILQPSKEALEGISPVHRERSKLSFEKEKNSNVFPCCPAGGNFGSSFVPNRTSCSVEQSCLATPVEQTNINPQNVNSHKDISLTENELAGPVQQHSDSSHSCRSENTLHSCSNRGKSDNTIPKDSLGPEVKQTGRGDIDVQAVESCDGTISWNTSSTFARPRIFCLQHALEIEELLEGKGGVRALIICHSDYIKLKALAISIAEEIEFQFDCTDVPLANASKSDLHLINISIDDEGHEEDGRDWTSQMGLNLKYCAKLRKETSGIRDQSPLSVWELFSNPSPVSVVPNLKWLCRKARTPYKVIGIITSSGTSAAAEEVKPEVKKETCTTGNGNVHEDDSRQHISQQSGLVQPSGLHDSDDRENKSSCLEENDHDRHCLIDIPIAVAEYPMKHQVCEGAVGVSTCNDTICSSDSQDSSPLATSPVDVTRYQGCIQSTELSSSSTFSVRQFLNDESTSVEGSMNCMSNHEYLQSQDVTLQCRDECLQVQQDQEEMRLCNNSNRTSVDPCLKEDLVISEEKHGSNVSAALENEHDCAKTSKCSYKTNESAAVNQLKTHDAGAVPEKQKSSCDEMTCGSADVQCSITFGCLGSADVPGSTQPQLVPHDLMSDELQVDSHHCVVKAVEPKSNNSAKHESPQIDNLILEDAQAAATTAIPGHDGKSVHAGSNSFDILLGALAEESKVTDAPGKDEVGKASLTLMTLASNDHSADEIAEGKVVEVAKTNTIFGATKDDEQVDRPHDFHLSDVVSRSIGNSNRTEIICYVRRKHKRKKDSQSNTDSSQSLGNFIRSPCESLRPRTKPAVVETIEVSAGKKGKRAKVVLFQCDIDLCDMTFETRAELNAHKRNICTDESCGKRFSSHKYLKRHQCVHSDKRPFKCPWDGCEMTFKWLWAQTEHVRVHTGERPYKCSAPSCGQTFRYVSDYSRHRKKFNHY*