Information report for Sevir.5G427500.1.p
Gene Details
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Functional Annotation
- Refseq: XP_004970992.1 — pentatricopeptide repeat-containing protein At2g36240
- Refseq: XP_004970993.1 — pentatricopeptide repeat-containing protein At2g36240
- Refseq: XP_022682079.1 — pentatricopeptide repeat-containing protein At2g36240
- Refseq: XP_022682080.1 — pentatricopeptide repeat-containing protein At2g36240
- TrEMBL: K3XH52 — K3XH52_SETIT; Uncharacterized protein
- STRING: Si001224m — (Setaria italica)
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: arahy.Tifrunner.gnm1.ann1.DTN1S6
- Brachypodium distachyon: Bradi2g58250.1.p, Bradi2g58250.2.p, Bradi2g58250.3.p
- Hordeum vulgare: MLOC_72623.2
- Oryza sativa: HDT702
- Panicum virgatum: Pavir.5KG707800.1.p
- Setaria italica: Seita.5G422100.1.p
- Triticum aestivum: Traes_3AL_A8E345835.2
Sequences
CDS Sequence:
- >Sevir.5G427500.1.p|Setaria_viridis|C2H2|Sevir.5G427500.1.p
ATGGCTGCCTCCCGCCGCCTCGCGCGGAAGCTGCCCTCGCTGATCTCCAGGCATCAGCGCCTCATCTCCCCGGAGATCGAAGCAGCGGAACTCACTGAATCCCCCACCATCTCGGCATCCATTCCGCTCGACCCCTCCCTGCCCGTCCTCCCGCTCGCCGTCTCCCACCTTTCGCCGCCGAGCCCGCTCCCGGCGCTCCCCTCCGCGCACGCCTCCTCCCCGGCCTCGCTCCTCCGTCTCCTCCGCCGAGCGCGCCACCACCCGCAACTCGCGGCGCTCGACCTCCACATCCTCCTGGCCGCCGCGGACGCGTCGCCCGCATTCCGCCCCGACCACGGCTTGACATCGCTCCTCGCCGCCCGCCTCGCGGCCTCGCGCCGCCTACCCTCGCTCCGGCGCCTCCTCGATCTCGTTCTCGCCCGCCCCTGCCCCTGCGCCGACGACTCCATCTTCGCATGCCCCGAGCTCCTCCCCACCTTCCGCAAGGCCATCGTCGCCTTCGCCGCCTCCGGTGACATCCCCGCCGCGTCCGAAGCCCTCGCATCCCTCCGCCGCGCCGCTGACTCCCCACTCCCCGCCGAGTTCTACAATATCATCCTCCACGCCCTCTCCCGCCTCCGCCGCCACGTCGATGTGATCCGCTTCTACGGCGAGATGACCTCCGTCTACCGCGTCGCCCCGGATGCCTACACGTTCAATATACTCATCAACAGCTCCTGCCGCGCGGAAGGCGTCAACACCGCCATGCGGTGGTTTGGCGAGATGCAGCGGCGGAGCTGTGCACCGACTGGCGTTAGTTTCAACACACTTATGCGCGGGTTCATCAGAGAAGGCAGGTACAAGGAAGGAATCAAGGTCGCACGTGAGATGCTTGAGCTTGGGGTCGGGCTGTCGGTTGTGTCCATGGAGATTTTGATCAGCGGCTTGTGCCGTGGTGGTGAGGCACTAAAGGCGGCTGAGGTGTTTGTTGAGTTTTGGGGGGATGGAGTGGTGCCAGAAAGGTTTGATTGCTTTGAACTAGTTGAGGCTCTGTGCCGTGTGGGGAAGATAGATAAAGCAGTGGAAGTGGTGGACATGGTATTGGAGAGGAATATGAAATGCTGTCTCAGCGTGCCTGCTGGTGTTACGGTTTTGGAGTGCCTGATGAAGGCGGGGAAGCTGGATAAGGTTTGCCAGTTGATGTGGAGAATGATTGATCAGGGGATTGTTCCAGATACAATTACTTGTAACTGCGTCTTTGAGGCGCTTTGTGAAGCTGGGAGGGCAGCTGATGCAAACCAGCTTAGAGTGCTCGCTAAGGAGCAGGGTTTTGTGGCTGATGGTGAAACCTATCGTATGCTGAATTCGCAGTCCCAGACACCCAGTCACAGCGGCCAGCGCTCTCCTTCTCACTCGTCTCTCTTTCTCTTCCCATTCTTACCCCCGCTCCCCTCCAACTCAAGGCTCCAAGCGGCCGCTCCCCAAAACCCTCTCCCCCTCCCGAAGCAGCGCGGCGGAGAGAAGCCGCTGGGGGTTCCGGGGCGTGTCGTTCCTCCTCCCCAAGCCATGGATTTTGCAAGTTGTAAGCACTGGGGAGTTCTAGTCAGACCTGGTGAGACAGTGAAGTGTAACCCAGGAGAGGTGTATTGTCATGTTTCACAGATTGCGTTGCAGGATGACAAGGGGAATGAGGATGTGAGAGTTTTTGTGAAAGTTGGTGGCAATGAAATTCTGGTTGGCACACTGTCAGTTGACAAATACCCTCAGTGTATGATTGGTTTGGTCTTTGAGAAGGAGTTTGAGTTACGGCACACATCAAAAAACAGCAACATCTCTGCTCTTGGTTACAAATTCTGCGAGACAAAATCTTATTCTGACACTAGTACTGATGATGATGATGACTCTGATGAGGAGGTTCCATTAGCTATTCCACTATACCCCAATGCAGATGATGATAGAAGCAAACAAACTAAAAGTGGTGTGGACAACCCTGCTTCAACTCAATTATGTAAACCAAAGAATACCTTGGAAGAAACAAAGGATCCTGAGAAACAGAAAGGTGATGTTGGTGGCACTGATGATGATCACAGTGATGAAAACTCTGTTCATTCTGAAGAGGGTGAATCTGGTGATGATGAGGATTCCAGTGATGAGGATGATAGTGACAGTTCAGATGAAGATGATGGTGAAGATACTCCAAAGAACATTATGGGCAAGAATAGGCCAGCAGAAACACCCTTGAAGACACCTCTAAAGAAGGCAAAGATCGCAACGCCTTCTATGGGAAACAAAACTGGCAGTGGCAGTACTAAGAGAAGTGGCTATGTCCATGTTGCGACCCCTTATCCAAAGCAGGTGAAGAAGACACCTTCAATCATTGACAGCTCTAAGCAATCCGCTGGCTATTCCTGCAAGTCGTGCAGCAAGACTTTCTACTCCTCTGTTGCTCTGGATACTCATCGCAAGGTGAAGCATAATGCTCATAAGTGA
Protein Sequence:
- >Sevir.5G427500.1.p|Setaria_viridis|C2H2|Sevir.5G427500.1.p
MAASRRLARKLPSLISRHQRLISPEIEAAELTESPTISASIPLDPSLPVLPLAVSHLSPPSPLPALPSAHASSPASLLRLLRRARHHPQLAALDLHILLAAADASPAFRPDHGLTSLLAARLAASRRLPSLRRLLDLVLARPCPCADDSIFACPELLPTFRKAIVAFAASGDIPAASEALASLRRAADSPLPAEFYNIILHALSRLRRHVDVIRFYGEMTSVYRVAPDAYTFNILINSSCRAEGVNTAMRWFGEMQRRSCAPTGVSFNTLMRGFIREGRYKEGIKVAREMLELGVGLSVVSMEILISGLCRGGEALKAAEVFVEFWGDGVVPERFDCFELVEALCRVGKIDKAVEVVDMVLERNMKCCLSVPAGVTVLECLMKAGKLDKVCQLMWRMIDQGIVPDTITCNCVFEALCEAGRAADANQLRVLAKEQGFVADGETYRMLNSQSQTPSHSGQRSPSHSSLFLFPFLPPLPSNSRLQAAAPQNPLPLPKQRGGEKPLGVPGRVVPPPQAMDFASCKHWGVLVRPGETVKCNPGEVYCHVSQIALQDDKGNEDVRVFVKVGGNEILVGTLSVDKYPQCMIGLVFEKEFELRHTSKNSNISALGYKFCETKSYSDTSTDDDDDSDEEVPLAIPLYPNADDDRSKQTKSGVDNPASTQLCKPKNTLEETKDPEKQKGDVGGTDDDHSDENSVHSEEGESGDDEDSSDEDDSDSSDEDDGEDTPKNIMGKNRPAETPLKTPLKKAKIATPSMGNKTGSGSTKRSGYVHVATPYPKQVKKTPSIIDSSKQSAGYSCKSCSKTFYSSVALDTHRKVKHNAHK*