Information report for SapurV1A.0459s0120.1.p
Gene Details
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Functional Annotation
- Refseq: XP_011040431.1 — PREDICTED: lysine-specific demethylase REF6-like
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: A0A2K1YB81 — A0A2K1YB81_POPTR; Uncharacterized protein
- STRING: POPTR_0012s09390.1 — (Populus trichocarpa)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_09671_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D07G0545, Gohir.D07G058400, Gh_D09G2376, Gohir.D09G245700, Gohir.A09G244800, Gh_A09G2168, Gohir.A07G054000
- Manihot esculenta: Manes.14G055900.1.p, MANES_14G055900, Manes.06G114100.1.p, MANES_06G114100
- Populus trichocarpa: Potri.012G092400.1, POPTR_012G092400v3, Potri.015G089000.1, POPTR_015G089000v3
- Ricinus communis: 30147.m013814
Sequences
CDS Sequence:
- >SapurV1A.0459s0120.1.p|Salix_purpurea|C2H2|SapurV1A.0459s0120.1.p
ATGGCGGCTCCAAGTGGTTTAAGTTCAGAACCACCACAGCCACCAACAAGTACAGAAGTATGTCAATGGCTAAAGAACTTACCTTTAGCACCCGAATACCGTCCAACACTATCTGAATTCCAAGATCCAATTGCTTACATTTTCAAAATTGAAAAAGAAGCTTCTCAATATGGAATCTGCAAAATTATCCCTCCTGTCTCACCCCCTGCTAAAAAAACCACTCTTTCCAACCTCAACCGCTCTCTCTCCGCCCGTAACGGTGACTTCTCTGCCCCCACATTCACAACACGGCAGCAGCAGATCGGGTTCTGCCCCAGGAAACCCCGCCCTGTTCAAAAACCAGTGTGGCAGAGCGGTGAGACCTACACATTTCAAGAATTTGAAACCAAGGCTAAAAGCCTTGAGAAGAATTATTTGAAGAAGTTCTCTAAGAAGGGAGGTCTTTCTCCATTAGAAATTGAAAACCTTTATTGGAAAGCTACTTTAGATAAGCCTTTTTCTGTAGAATATGCTAATGATATGCCTGGTTCTGCGTTTTCGCCGAGGAAAAAGGAGGGACAGGGAGGGGTTGTTGGGGAGGGAATGAGTTTGGGGGAAACTGAGTGGAATATGAGGTGTGTTTCAAGGGCTAAAGGGTCCTTGTTGAGGTTTATGAAGGAGGAAATACCTGGGGTTACTTCGCCTATGGTTTATATTGGGATGATATTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGATTTGCATAGCTTGAATTATATGCATATGGGTGCTGGGAAGACATGGTATGGTGTGCCTAGAGAGGCTGCTGTTGCATTTGAGGAAGTTGTTAGGGCTCATGGGTATTGTGGAGAGAATAATCCTCTTGTTACATTTGCTGTTCTTGGTGAGAAGACGACAGTAATGTCACCTGAAGTATTTGTCAGTGCAGGTGTGCCGTGCTGCAGGTTAGTTCAAAATGCTGGGGAGTTTGTAGTCACTTTCCCGAGAGCCTATCATTCAGGTTTCAGTCACGGATTCAATTGTGGGGAGGCAGCCAATATTGCTACACCTGAATGGTTGATAGTTGCTAAAGATGCTGCTATTCGAAGAGCTTCAATAAATTACCCTCCTATGGTGTCTCATTTCCAGTTACTTTATGATCTTGCTCTCGAATTTTGTACAAGAATACCTGTGAACATCAGTGCTAAACCACGGAGTTCAAGACTGAAAGATAAGCAAAAGGGTGAAGGAGAAACACTGGTTAAAGAGCAATTTGTGAAGAATGTGATGCACAATAATGACCTGCTTCATACTCTTGGTAAAGGATCTTCAGTGGTGCTTCTTCCACGAAGTTCTTCAGACATTTCTGTTTGTTCAAAATTACGAGTTGGGTCCCAGTTAAGAGTTAACCCCACCCTTGGATTAAGCAGCCCGAAGGATTTTATGAAATCCTCAAAAAACTCAGGTTCTGATGACATCCTGCTGGATGAGAACCAGGAAATTAATCAAGTGAAAGGCTTCTTTTCAGTGAAAGCAAAGTTTGCTTCTTTGTGTGAAAGGAATAGGTTTTCCACATTAAATGGAAATGAATGCACACAGAGTATGAACAGCACTGAAAGAGTTAGTTCCATTCATGGTGATAAGCTGTCAGATCAGAGACTGTTTTCATGCGTCACATGTGGAATCTTGAGTTTTGATTGTCTTGCCATCATTCGACCAAAAGAGGCAGCTTCTAGATACCTCATGTCAGCTGATTGTAGTTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTAACAAGGGATGTTCTTACTGTTGCTGGTGGGACTGCAAATATGACTGAACAGAATTCCTCAATGAGATGGAGAAAGAATCCCGTGGCTGGTTTATATGATGTCCCTGTTCAATCTCTTAATCATCAAATTCAGATGGCAGATCAAAGTGTTGAAGTGGCTCCCAGTTCTACAAAACAGATGGAGTCCTCTGCTCTTGGCCTATTAGCTTTGAATTATGGAAATTCGTCTGACTCTGAGGATGATCAGGTTGAAGCAGATCTATCTTGCCAGGATGAAACTAACCTGGCAAACAGTTCATTAGAAAGCAAATATCAGGGTCAGAGTTCTGCTTTCCCTTCTTACAGGCAGAAGTGCTATGATGCTGAAACTGGTGTTCACCCTCCATCTCCATCAAAACATGATCAGCAGGGTGATATTACTTTCAAAGCTATTTATATGTATCCAGAACATGGAGATAGGCCAGATAATTTCAAGGCTAGAAGTGATGATACACTTGGATGTTCTTTTGGCTTCCCAGCCGATAACCCTGCTTGCTTTGAATCAAATAGTTTGGATGGTAGATACAGAGATCCAATGTCAATGCCACACATGTCTTTAAATTGTTCCCCAATTGTCCAAGATACTGAAAAAACAAAGTTTAACAGGCCTACTGTACCAATAGAGAATCCAGATATGCCATTTACCCAAAGATCTGATAAAGACTCTTCGTGCATGCACGTGTTCTGTCTTGAGCATGCTGTAGAGATAGAACAACAACTTCGTCAAATGGGTGGAGTACATATATTCCTTCTCTGTCATCCAGAGTATCCCAGGATTGAAGCAGAAGCAAAGTCAGTGTCAGAAGAATTGGGAATTGATCATCTATGGAATGACATTACTTTCAGGGATGCAGCCAGAGAGGATGAGGAGAGGATCCAGTCAGCTTTGGATACTGAGGAAGCCATACCAGGGAATGGGGACTGGGCTGTGAAGTTGGGGATCAATCTTTTTTACAGTGCCAACCTCAGCCGATCTCCTCTTTATAGTAAGCAGATGCCATACAATTCTGTTATATACAATGCCTTTGGTTGTGCTTCTCCAGTTAGTTCACCCCCAAAATTTAAGGTTTATGGAAGGAGATCCGGGAAGCCAAAAAAAGTTGTGGCAGGGAAATGGTGTGGAAAAGTTTGGATGTCAAATCAAGTTCATCCCTTTCTAGTGAAAAGGGATTTTGTATATCAAAATAAGAAACAAGAACAAGAAAGAAGCTTCCATGCTTTGGCAACACCTGATGAAAAGCTTGAGAAAAAACCACTAACCATCCACAAAAATGAAACCAGTAGAAAATCTGGGAGGAAGAGGAAAACAATTACAGAGAGTGGGGCCATTAAGAAAGTAAAGTGTCTGGAAGCAGAAGAAGCAGATTCAGAAGACTCAGTGGGGGATAATTCCCATAGGCAGCATATGAGGATTCACAATAGGAAAAACAGTGAAGACATTGAGAGAGAGATTTCATATGATCTAGTAGAGGATAGCAATCAGCAGCATGGGAGCTACAGACGCAAATGGGCCAAATCTGTTGAGAGTGATGATGCAGTTTCAGATGATCCATTAGCTGAACATGTTCGTCAGCAGTATAGGAGAATGTGTAGAAATAAGCAAGCCAGATCTATCAAGAGGGAAAATACAGTTTCTTATGTTTCAGTGGAGAACAAGTTTCGAAAACAGCTTAGGAGAGTTCATAGAAGCGACCAAGCCAAATGTTCTGAGAGACGATGTGTAGCTTCTGATGACTCACTGGATGATAACAGTGATCAATGGCATGAGAGAGCTCAAAGAAGCACACTAGTAAAATATGCTGAGAGTGAAGATGCAAATTCAGATGATTCACCAGAGGAGAGTTCTCGTTGGCAACATGGGAGAGTTTCTAGGAGCAAACATTTGAAATATATAAAAAATGAAAGTGCAATTTCAGATGATTCATTGGAGAATGGCTCTAATCAGCACAAGAGAAAATCAAGAGGCAAGCGAGCCCAGGTCAGTAAAAGGGATGATGCGGTTTCCAATGATTCATTGGATGAAAGTGCATTTCAGCAGCTCCCGAGGTTTTCTAGGAGCAAGCTAGCCAAATTAATCGAGAGGGAGGATGCAATTTCATATGGTTCGTTGGAGGAAAATACCCATCAGCAGCATGAAAGGATTCTTAGAAGCAAGCAATCCAAATTTGTTGAAAGGGAAGATGCAATTTCAGATGATTCTCTTGAGGATAATATTCACTGGCAGCACAGAAGAATTCCTAGAAGCAAAATGGCCAAGTTTGTTGAGAGTGAAGATGCAGCTTCAGATGATTTGCAGGAGGATGATGGTCATCAGCATCTCCGAAGAATTCCAAAAGGCAAAAAGGCCATCTCTATTGAGAGTGGATATGTGATTTCTGATAATCTGTGGGAGAATAATACTCATCGTCACCGTAGGAAGACTCCTAGAGGCAAGCAACCCAGTATAGTTGAGAGTGAAGATGCTGTTTCAGATGACTTGCTGGAGAATAATTCCGATAAGCAGGACAGGAGTATACATCGAAGCAAGCAGAAGAAATATTCAATGAAACAAGGGATTCATGGGCAACTGAAACAGGGTGCCCCAAAGATGATAAAAAGAGAGACCCCACAATTAATGAAACAAGAGAGGCAAATAAAGCCAGAAACTCCTCGGCTTCGGTTTGGTAAAAGTTACATGAATGCTAGACAGTTTGATTCACATGCTGAAGAGGAGCGAGAAGCTGGACCTGGCACGCGCCTCAGGAAAAGACTCTCAAAGGCTCCAAAACAGCTGGTAAAAAAGCTGAAAGAGAAGCAGAACATCAAGAAAAAAGTGAAGGATGCTACAGCAGTGAAAGCCCCAGCTGGGCGAAAGAGTGTTAAAATGAAAGACGAGGAGGCAGAATATCAGTGTGACATTGACGGATGCACAATGAGTTTTGGGTCAAAACAGGACCTTGCAATGCACAAAAGAAACATTTGTCCAGCCAAGGGGTGTGGGAAGAAGTTCTTCTCGCACAAATATCTGGTGCAGCATCGTCGAGTTCATATAGACGAGCGCCCTCTCAAGTGCCCCTGGAAGGGATGCAAGATGACATTCAAGTGGGCGTGGGCGCGGACCGAACACATCAGGGTTCACACAGGTGCTCGTCCATATGTATGTGCCGAGGAAGGTTGCGGTCAGACGTTCAGATTCGTGTCAGATTTCAGTCGTCATAAGCGCAAGACTGGTCATTTGGCAAAGAAAGGTAGGGGGTAA
Protein Sequence:
- >SapurV1A.0459s0120.1.p|Salix_purpurea|C2H2|SapurV1A.0459s0120.1.p
MAAPSGLSSEPPQPPTSTEVCQWLKNLPLAPEYRPTLSEFQDPIAYIFKIEKEASQYGICKIIPPVSPPAKKTTLSNLNRSLSARNGDFSAPTFTTRQQQIGFCPRKPRPVQKPVWQSGETYTFQEFETKAKSLEKNYLKKFSKKGGLSPLEIENLYWKATLDKPFSVEYANDMPGSAFSPRKKEGQGGVVGEGMSLGETEWNMRCVSRAKGSLLRFMKEEIPGVTSPMVYIGMIFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPREAAVAFEEVVRAHGYCGENNPLVTFAVLGEKTTVMSPEVFVSAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLIVAKDAAIRRASINYPPMVSHFQLLYDLALEFCTRIPVNISAKPRSSRLKDKQKGEGETLVKEQFVKNVMHNNDLLHTLGKGSSVVLLPRSSSDISVCSKLRVGSQLRVNPTLGLSSPKDFMKSSKNSGSDDILLDENQEINQVKGFFSVKAKFASLCERNRFSTLNGNECTQSMNSTERVSSIHGDKLSDQRLFSCVTCGILSFDCLAIIRPKEAASRYLMSADCSFFNDWVVGSGVTRDVLTVAGGTANMTEQNSSMRWRKNPVAGLYDVPVQSLNHQIQMADQSVEVAPSSTKQMESSALGLLALNYGNSSDSEDDQVEADLSCQDETNLANSSLESKYQGQSSAFPSYRQKCYDAETGVHPPSPSKHDQQGDITFKAIYMYPEHGDRPDNFKARSDDTLGCSFGFPADNPACFESNSLDGRYRDPMSMPHMSLNCSPIVQDTEKTKFNRPTVPIENPDMPFTQRSDKDSSCMHVFCLEHAVEIEQQLRQMGGVHIFLLCHPEYPRIEAEAKSVSEELGIDHLWNDITFRDAAREDEERIQSALDTEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGCASPVSSPPKFKVYGRRSGKPKKVVAGKWCGKVWMSNQVHPFLVKRDFVYQNKKQEQERSFHALATPDEKLEKKPLTIHKNETSRKSGRKRKTITESGAIKKVKCLEAEEADSEDSVGDNSHRQHMRIHNRKNSEDIEREISYDLVEDSNQQHGSYRRKWAKSVESDDAVSDDPLAEHVRQQYRRMCRNKQARSIKRENTVSYVSVENKFRKQLRRVHRSDQAKCSERRCVASDDSLDDNSDQWHERAQRSTLVKYAESEDANSDDSPEESSRWQHGRVSRSKHLKYIKNESAISDDSLENGSNQHKRKSRGKRAQVSKRDDAVSNDSLDESAFQQLPRFSRSKLAKLIEREDAISYGSLEENTHQQHERILRSKQSKFVEREDAISDDSLEDNIHWQHRRIPRSKMAKFVESEDAASDDLQEDDGHQHLRRIPKGKKAISIESGYVISDNLWENNTHRHRRKTPRGKQPSIVESEDAVSDDLLENNSDKQDRSIHRSKQKKYSMKQGIHGQLKQGAPKMIKRETPQLMKQERQIKPETPRLRFGKSYMNARQFDSHAEEEREAGPGTRLRKRLSKAPKQLVKKLKEKQNIKKKVKDATAVKAPAGRKSVKMKDEEAEYQCDIDGCTMSFGSKQDLAMHKRNICPAKGCGKKFFSHKYLVQHRRVHIDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHLAKKGRG*