Information report for SapurV1A.0179s0170.1.p
Gene Details
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Functional Annotation
- Refseq: XP_006376312.1 — protein SENSITIVE TO PROTON RHIZOTOXICITY 1
- Swissprot: Q9C8N5 — STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
- TrEMBL: B9MW64 — B9MW64_POPTR; Uncharacterized protein
- STRING: POPTR_0013s11900.1 — (Populus trichocarpa)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0010044 — Biological Process — response to aluminum ion
- GO:0010447 — Biological Process — response to acidic pH
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Citrullus lanatus: Cla016368
- Citrus sinensis: orange1.1g009831m
- Cucumis melo: MELO3C023668P1
- Cucumis sativus: Cucsa.079940.1
- Fragaria vesca: mrna27486.1-v1.0-hybrid
- Juglans regia: WALNUT_00010075-RA
- Malus domestica: MDP0000453148, MDP0000199559, MDP0000141403, MDP0000551046
- Manihot esculenta: Manes.18G099800.1.p, Manes.02G190700.1.p
- Populus trichocarpa: Potri.013G114600.1, Potri.019G085400.1
- Prunus mume: XP_008237278.1
- Prunus persica: Prupe.8G055100.2.p, Prupe.8G055100.1.p
- Ziziphus jujuba: XP_015886371.1
Sequences
CDS Sequence:
- >SapurV1A.0179s0170.1.p|Salix_purpurea|C2H2|SapurV1A.0179s0170.1.p
ATGGAACCCAACGATAGGCTATCTCTAGATGCATGGGCAAATCCTTCATCCTCCTGTAATGGATTACCGAGAAAGATGTCCTTGGAAAACCCATCCTTTACCAATTTCAATTTACAGCAACAGGAGCAGAAATGGGATGACACCTCCATTTTAAATTATGGTATTAGGATTGAGCCACCTTTCCTCGAATTCAACCAAGCATCAGAATCTGAATATTTGCTTTCTTCCACCTGCAACAATCAACCCAAAGTCCTGGATCAAGAAGATGGACTAAATAGTGAGGCACTTCAAACAAGCAAATCCCTAGACTGGGATCCAAGAACCATGCTCAATAATCTTTCTTTTCTAGAGCAAAAGATCCATCATCTCCAAGATCTGGTGCATTTAATTGTTGGCCGCAAAGGCCAGGCTTTAGGGGGACATGATCAACTTGTAACTCAGCAGCAACAGCTCATCACTGCTGATCTTACTTCAATAATTGTTCAGCTGATCTCCACTGCAGGTAGTCTTCTCCCATCTGTGAAACATAAACTTTCTACAGGCCCTCCTAATGGACAGCTTGGGGAGCTTCTTTTTCCTCCTTTAGCGGGCATGAACTGTGTTCCACAGCCGCAGCATGGCAGTGGAAGTAAAGCTGTACAGCCGCAATGTGTCACCGGAAGTAAAGTGTCTGATCAGTGCAACCAGATGGATGTCACAGGAAGTTTTGGGACTGAACAGAACCTCTCAATTGAAGAACATGAAATGAAAGAGGAAGAAGATGCTGATGAAGGAGAAAACCTTCCGCCTGGTTCCTATGATATATTACAACTAGAAAAGGAAGAAATACTTGCGCCACACACCCACTTTTGCACAATATGTGGGAAGGGGTTCAAACGGGATGCAAATTTGAGGATGCATATGAGAGGCCATGGTGACGAGTACAAAACCCCTGCCGCACTTGCAAAACCCAACAAAGAATCCAGCTCAGAACCAGTGATTATTAAGAGGTATTCCTGCCCTTTTGCTGGTTGCAAGCGAAACAAGGATCACAAGAAGTTTCAGCCGTTGAAGACTATTCTATGTGTCAAAAACCATTACAAGAGAACCCATTGCGACAAAAGCTACATTTGCAGCCGATGCAACACCAAGAAGTTCTCAGTTATGGCAGATCTCAAAACTCATGAGAAGCATTGTGGGAAGGATAAATGGCTTTGTTCCTGTGGCACAACATTCTCGAGGAAAGACAAGCTTTTTGGGCACATTGCTCTGTTCCAAGGCCATACTCCTGCTATCCCCCTCGAGGAAACTAAAGGACCTTCTCTGTCATGTGATAAAATGGATGGGAATGAAGCATCAAATAAGTCTGGAAACATAAATTTCAGCTTTGGCTCCAATGCTGGTGGTGGGGCTCAAAATATTATCGAAGTGAAGGAGGATGCTGATGATCCTGCTAATTATTTCTCACCATTGAGCTTCGATACATGTAATTTTGGTGGATTCCATGAGTTCCCTCGACCCACATTTGATGATTCAGAAAGTTCATTCTCCTTTCTTGAAGCCCCGTGA
Protein Sequence:
- >SapurV1A.0179s0170.1.p|Salix_purpurea|C2H2|SapurV1A.0179s0170.1.p
MEPNDRLSLDAWANPSSSCNGLPRKMSLENPSFTNFNLQQQEQKWDDTSILNYGIRIEPPFLEFNQASESEYLLSSTCNNQPKVLDQEDGLNSEALQTSKSLDWDPRTMLNNLSFLEQKIHHLQDLVHLIVGRKGQALGGHDQLVTQQQQLITADLTSIIVQLISTAGSLLPSVKHKLSTGPPNGQLGELLFPPLAGMNCVPQPQHGSGSKAVQPQCVTGSKVSDQCNQMDVTGSFGTEQNLSIEEHEMKEEEDADEGENLPPGSYDILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKESSSEPVIIKRYSCPFAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKGPSLSCDKMDGNEASNKSGNINFSFGSNAGGGAQNIIEVKEDADDPANYFSPLSFDTCNFGGFHEFPRPTFDDSESSFSFLEAP*