Information report for Rsa1.0_08195.1_g00001.1
Gene Details
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Functional Annotation
- Refseq: XP_018439998.1 — PREDICTED: lysine-specific demethylase REF6
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: A0A0D3DRD2 — A0A0D3DRD2_BRAOL; Uncharacterized protein
- STRING: Bo8g076910.1 — (Brassica oleracea)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G48430, AT3G48430.1
- Brassica napus: BnaA06G0167600ZS, BnaC08G0288400ZS, GSBRNA2T00068139001, GSBRNA2T00125332001
- Brassica oleracea: XP_013604508.1, XP_013604507.1, Bo8g076910
- Brassica rapa: XP_009149820.1, XP_009149819.1, Bra018060
Sequences
CDS Sequence:
- >Rsa1.0_08195.1_g00001.1|Raphanus_sativus|C2H2|Rsa1.0_08195.1_g00001.1
AGCATGCTGCGGAAGTGGAACAACGACTTCATCCTATTGGGGGAATTAACATCATGTTATTATGCCATCCAGATTACCCAAGGATAGAGGCTGAAGGAAAGATAGTTGCCAAAGAGCTTGGTGTGAATCACGAGTGGAATGATACTGAGTTCAAGAATGTGACCCGAGAGGATGAGGAAACGATTGAGGCGGCGTTGGCAAACGTAGAAACCAAGGCTGGGAACAGTGACTGGGCTGTGAAGTTGGGTATTAACCTTTCTCACAGTGCTATCCTCAGTCGCTCTCCTCTGTACAGCAAGCAGATGCCTTACAACTCCGTCATTTACAATGTGTTCGGTCGCACCTCTCCAGCAACGAGCTCACCCACAAGACCCCAAGTTTCTGGTATAAGGTCTTCCAGACAGAGGAAGTATGTTGCTGGAAAATGGTGTGGTAAGGTTTGGATGTCACATCAGGTGCATCCTTTTCTGCTGGAGGAGGACTTAGAGGGGGAAGAAACTGAAAGAAGTCATCTGCGAGTTGCTATGGATGAGGATGTCACTGTTCATGGTAATGATTCTAGAGATGCAACCACAATGTTCGGGAGAAAGTATTCTAGGAAGAGAAAAGCGAGAGGGAAGGCTGCGCCACGCAAGAAGCTTACCTCTTTTAAGAAGGAAGCAGGAGTTTCCGATGATACGTCAGAGGATCATTCCTATAAGCAGCAATGGAGGGCTTACGGGGATGAGGAAGAAGAGTCTTATTTTCAGACGGGAAACTCGGTTTCTGGTGACTCATCAAATCAAACGTCTGATCAGCAGCAACGGCTCAAGAGGATTCGTGGAGGAGACAAAGGTGTTAAAGAGTTTGAGTCAGATGATGATGATGATGAGGTTTCAGAGCGTTCGCTTGGACGAGAGTATGCTGTAAGGGAATATGCATCTTCAGAAAGCTCCATGGAGAATGGCTTTCAGGTTTACAGAGAGAAGCAGCCAATGTATGGTGGTGATGATGATGATGATGATGATGATGATAATAACTATAGGCACCCTGGAGGGGTTCCAAGGAGCAAACGGACTAAAGTTTTTAGGGATCTGGTTTCATATGATTCAGAAGAAAATGGCGTTTATCAGCAAAGGGAAAGAGTATTCACAAGTGATGCACAGACTAGTCGAATGGGTGTGGAGTACGATTCAGAAGAGAATTCATTGGAGGAACAAGACTTTTGCAGTAGAGGAGGGAAAAGAAAGCAAACAAGGTCCATAGCTAAACGCAAAGTAAAAACCAAGATAGTTCAGAGTCTGGGAGACACTTTGCTACAATCTGGTTCCGGAAAGAAGAATCAAGATTTGGATTCATACATGGAGGGACCTAGCACACGGCTTAGGGTGAGAACCACGAAGCCCTCAAGAGGATCTTCAGCGACAAAACCGAAGAAAACTGGTAAGAAAGGAAGAAATGTTTCCTTCTCAGGAGTCGCAAGTGAAGAAGAGGTGGAGGATAATGAAGAAGAAGAAGAAGAAAGTGAGGAAGCTAGCACACGGATAAGGGTGAGACACGTGAAGCCCGCAAGAAGGTCTTTGGAGACAAAACCGAAGAAAAGTGGTAAGAAAGGAAGTAATGTAACCCTCGCAAGTGAAGAGAATGTGGAGGAAGAAGATGAGGAAGAGGAATGCTTGGGGTACCAATGCGACATGGAGGGATGCACAATGAGTTTTAGTTCAGAAAAACAGTTGTCTCTGCATAAAAGAAACATATGCCCTGTAAAAGGCTGTGGCAAAAACTTCTTCTCACACAAGTATCTGGTTCAACACCAGCGTGTTCACTCGGATGATCGTCCACTGAAATGTCCATGGAAAGGGTGCAAGATGACGTTCAAGTGGGCTTGGTCAAGAACAGAGCACATAAGGGTACACACTGGTGAGAGGCCTTATGTTTGCGCTGAACCGGGTTGTAGTCAGACATTCAGGTTCGTCTCAGATTTTAGCAGGCACAAAAGGAAGACGGGTCATTCAGCAAAGAAGATCAAGAAAAAGTGA
Protein Sequence:
- >Rsa1.0_08195.1_g00001.1|Raphanus_sativus|C2H2|Rsa1.0_08195.1_g00001.1
HAAEVEQRLHPIGGINIMLLCHPDYPRIEAEGKIVAKELGVNHEWNDTEFKNVTREDEETIEAALANVETKAGNSDWAVKLGINLSHSAILSRSPLYSKQMPYNSVIYNVFGRTSPATSSPTRPQVSGIRSSRQRKYVAGKWCGKVWMSHQVHPFLLEEDLEGEETERSHLRVAMDEDVTVHGNDSRDATTMFGRKYSRKRKARGKAAPRKKLTSFKKEAGVSDDTSEDHSYKQQWRAYGDEEEESYFQTGNSVSGDSSNQTSDQQQRLKRIRGGDKGVKEFESDDDDDEVSERSLGREYAVREYASSESSMENGFQVYREKQPMYGGDDDDDDDDDNNYRHPGGVPRSKRTKVFRDLVSYDSEENGVYQQRERVFTSDAQTSRMGVEYDSEENSLEEQDFCSRGGKRKQTRSIAKRKVKTKIVQSLGDTLLQSGSGKKNQDLDSYMEGPSTRLRVRTTKPSRGSSATKPKKTGKKGRNVSFSGVASEEEVEDNEEEEEESEEASTRIRVRHVKPARRSLETKPKKSGKKGSNVTLASEENVEEEDEEEECLGYQCDMEGCTMSFSSEKQLSLHKRNICPVKGCGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGERPYVCAEPGCSQTFRFVSDFSRHKRKTGHSAKKIKKK