Information report for Rsa1.0_01981.1_g00001.1
Gene Details
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Functional Annotation
- Refseq: XP_013727810.1 — protein indeterminate-domain 5, chloroplastic isoform X2
- Refseq: XP_022543688.1 — protein indeterminate-domain 5, chloroplastic isoform X1
- Refseq: XP_022543689.1 — protein indeterminate-domain 5, chloroplastic isoform X1
- Refseq: XP_022543690.1 — protein indeterminate-domain 5, chloroplastic isoform X2
- Refseq: XP_022543691.1 — protein indeterminate-domain 5, chloroplastic isoform X1
- Refseq: XP_022543692.1 — protein indeterminate-domain 5, chloroplastic isoform X2
- Swissprot: Q9ZUL3 — IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
- TrEMBL: A0A397ZA72 — A0A397ZA72_BRACM; Uncharacterized protein
- STRING: Bo7g080180.1 — (Brassica oleracea)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT2G02070.1
- Brassica napus: GSBRNA2T00115422001, GSBRNA2T00001824001, GSBRNA2T00030872001, GSBRNA2T00090135001
- Brassica oleracea: XP_013598337.1, XP_013612375.1, XP_013621228.1
- Brassica rapa: XP_009101276.1, XP_009123129.1, XP_009129175.1
- Raphanus raphanistrum: RrC8624_p1, RrC4797_p1, RrC4371_p1
Sequences
CDS Sequence:
- >Rsa1.0_01981.1_g00001.1|Raphanus_sativus|C2H2|Rsa1.0_01981.1_g00001.1
ATGGCCGCTTCTTCTTCCTCTGCTGCTTCCTTCTTTGGAGTTCGACAAGATGAACAGTCTCACCTGCTTCCTCTTAATTCCTCCGCAGCCGTTCCTGCTCCTCCTCACCACCAGCCACCGCAGCCTCAGCAACCCCTTGAAGCTCCACCGCAGAAAAAGAAAAGAAACCAACCAAGAACTCCAAATTCAGATGCAGAAGTGATAGCTTTATCTCCAAAGACACTAATGGCTACAAATAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAGAATCTACAGCTACACCGAAGAGGACACAATCTTCCATGGAAACTTAAGCAAAAATCGACCAAAGAAGTGAAGAGGAAGGTGTATCTTTGTCCGGAACCCTCGTGCGTCCACCATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTGAAAAGAAGTGGAAATGCGAGAAATGTTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGTACCAAAGAATATCGTTGCGATTGTGGTACACTCTTCTCCCGGCGAGACAGTTTCATTACGCATAGAGCCTTCTGTGACGCATTGGCTCAAGAAAGTGCGAGACACCCAACTTCTTTGACATCTTTGCCAAGTCACCACTTTCCCTACGGACAAAACACCAACAACTCCAACAACAACACTTCAAGCATGATCCTTGGTTTGCCCCATATGGGGGCCCCACAGAATCTTGATCATCAGTCCGGTGACGTTCTTCGACTTGGAAGCGGCGGAGGAGGTGGAGGGGGCGCCTCGCGATCTTCCTCTGATCTCATTGCTGCAAATGCTTCAGGTTACTTCATGCAAGAGCAAAACCCTAGCTTTCATGATCAGCAAGACCATCATCAACATCAACAACAAGGTTTTTTGGCTGCAAACAGTAACATCAAGCCATCTACAATGAATTTTCAACAGAGTCTGATGCAGTTCTCAAATGATAACCATAATTCTCCTTCCTCCAATCTCTTCAATCTAAGCTTTCTATCTGGAAACAATGGAGTTGCTTCTGCTACAAGCAACCCAAATGCTGCTGCTGTTTCTTCGGGTAATCATATGATTTCAAACCATTTTGGTGGTGAAAATGCTGTTGGAGGCAGCGGAGGAGGAAGTACTGGTCTCTTCCCTAACAATCTGATGAGTTCAGCAGGCAGAATCAACTCAGGAGCAGTGCCTTCACTCTTTAGCTCGTCAATGCAAAACCCTAATTCAGCGCCTCACATGTCAGCCACTGCTCTTCTTCAGAAAGCTGCTCAAATGGGTTCAACCTCAAGCAGCAGCAACAACAACAACAATACAAACAATGCCTCGTCGATTCTAAGAAGCTTTGGGAGTGGAATGTACGGAGAAAACGAGAGTAATCTTCACGATTTGATGAACTCTTTCTCTAACCCGGGCGCAACTGGAAACAACCTTAATGGAGTAGATTCTCAGTTTGGGACGTACGGTGGAGTGAACAAAGGACTAAGCGCTGATAAACAGAACATGACTAGAGACTTTCTTGGAGTTGGACAGATTGTAAGAAGCATGAGTGGAAGCGCAGGGTTTCAACAACAACAGCAGCAGCAGCATGGGAATGGTGGTAAAGAAAGAGTTGGCTCTTCCTCTGATTCCGCCGACAGAAACAGCATGAACGTGAATCCTGGTGGTGGTGGTTCTACAAGTTCACCATCGTATGGAATCCATCATGCTAGTTTCTAG
Protein Sequence:
- >Rsa1.0_01981.1_g00001.1|Raphanus_sativus|C2H2|Rsa1.0_01981.1_g00001.1
MAASSSSAASFFGVRQDEQSHLLPLNSSAAVPAPPHHQPPQPQQPLEAPPQKKKRNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTSLTSLPSHHFPYGQNTNNSNNNTSSMILGLPHMGAPQNLDHQSGDVLRLGSGGGGGGGASRSSSDLIAANASGYFMQEQNPSFHDQQDHHQHQQQGFLAANSNIKPSTMNFQQSLMQFSNDNHNSPSSNLFNLSFLSGNNGVASATSNPNAAAVSSGNHMISNHFGGENAVGGSGGGSTGLFPNNLMSSAGRINSGAVPSLFSSSMQNPNSAPHMSATALLQKAAQMGSTSSSSNNNNNTNNASSILRSFGSGMYGENESNLHDLMNSFSNPGATGNNLNGVDSQFGTYGGVNKGLSADKQNMTRDFLGVGQIVRSMSGSAGFQQQQQQQHGNGGKERVGSSSDSADRNSMNVNPGGGGSTSSPSYGIHHASF