Information report for Rsa1.0_00424.1_g00007.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_013689051.1 — uncharacterized protein LOC106392819
- TrEMBL: Q9C6L3 — Q9C6L3_ARATH; Uncharacterized protein F2J7.11
- STRING: XP_010436877.1 — (Camelina sativa)
- GO:0009860 — Biological Process — pollen tube growth
- GO:0010500 — Biological Process — transmitting tissue development
- GO:1990058 — Biological Process — fruit replum development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G57670.1
- Brassica napus: GSBRNA2T00149063001, GSBRNA2T00155781001, GSBRNA2T00121951001
- Brassica oleracea: XP_013635245.1, XP_013590861.1, XP_013600451.1
- Brassica rapa: XP_009139023.1, XP_009104072.1, XP_009104073.1, XP_009116471.1
- Raphanus raphanistrum: RrC2730_p1
Sequences
CDS Sequence:
- >Rsa1.0_00424.1_g00007.1|Raphanus_sativus|C2H2|Rsa1.0_00424.1_g00007.1
ATGACTGATCCTTATTCCAATTTATTCACAGGCTGGTTCAAGCCCAACCCGTTTCACAATTATCTTAATTCATCCACTAACCTTCCTCCTCCTTCTCCATTCTTCTTGATACCTTACTCCGGAGACCTCCGCCGTCCACCACCAACTCCTCCTCCTTCCCCTCCTCTCCGTGAACCCCTCCCTCTCCTCAGCCTTAGCCCCGCCAACAAACAGCAAAACCACCATGACCTAATTCAAGAACCGCCTTCGACCTCCATGGATGTTGACTACGGTCATCATCACCAACAAGATGATCATAATCTCGATGACGATGACCATGACGTCACCGTTTCTCTACGGATAGGCCTTCCAAGCCCTAGTACTCGAGATATGACCTCTTTGCTCATGATGTCTTCTTCCTCCTCTTCCTCTAGGACTACTCATCATCATGAGGACATGAACGATAAGAAAGATCTCGACAACGACCACCATCACGGAGGAGCCGGAGGAGGAGAAGATGACGACGAAGATTCAGTCGGCGGAAACAGCGGATGTAGAATCAGTAGTCTCAACAAGGGTCAATATTGGATACCTACACCTTCTCAGATTCTCATTGGCCCTACGCAGTTCTCTTGTCCTGTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAATACAGAAAAGGGACCGAATCTCTAAGGGGAACGCAACCAACTGGAATGCTGAGGCTTCCCTGCTACTGCTGTGCACTGGGCTGTCGCAACAACATTGACCATCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACACTTCAAACGCATTACAAGAGGAAGCATGGAATCAAACCCTTCATGTGTAGGAAATGTGGAAAGTCTTTCGCGGTCCGAGGGGACTGGAGAACACATGAGAAGAACTGTGGCAAGCTTTGGTATTGCATTTGTGGATCTGATTTCAAGCACAAGCGATCTCTGAAAGATCACATCAAGGCTTTTGGAAATGGCCATGGAGCTTATGGTATTGATGGATTTGATGAAGAAGATGAGCCTGCCTCTGAGATGCTGCCGGGTTGGTTATATGAAGCCAACTATGAATTTTCGGAGTTAGGTAAAATATGGGTGGTTTGGCACCCTAGTGTTAAAGTTGTTATCATCAAGAAGTCTCTCCAAATGATAACGTGTGAGGTTCTTTTGCCGGAAGCCACAAGCTGGATTCTCGTCTCGATTGTTTATGCAGCAAACACTGAGGATCTTCGTTTGAATCTCTGGAAAGAAATAGATGAGGTCTCTATCTACAACTGTAACCGGATGCTCCCTTGGATCGTCTTAGAGGACTTCAACCAAACGAGACACCCGAACGAGCATTCCACAGCGGTCTCTCAGAACGTTGACAGGAAAACACGAGCTTTCAGGGAATGTCTTTTGGAGGCAGGATTGGATGATCTGAACTACCGGGGAAACCTGTTCACTTGGTGGAATAAAAATCCAACCAAACCAGTGGCAAAAAACTCGACCGCATCCTTGTTAATGAGTTATGGGAAGAAGTGTTTCCATCGGCTTACGAATGAGGACTTCCTACCGATGATCTGCTACAACTGGTACTCCTTCAATGTAGTAGGATCGGCAATGTTCAGACTAGCTCGGAAACTCAAACTATTAAAGAAGGAGATCAGAGCATTTAGCAAGTTAAATTACTCTGGGATTGAAATGAGAGTGAAGGAGGCTCATGAGGTCCTAATTTTCCAGCAGGCTGAAACACTAGCTGATCCAACCCCTACTAATGCTGCACTTGAGTTGGAGGCACATCGCAAATGGCTGATGCTGGTCAAAGCGGAAGAAAAGTTCTTCCTTCAAAGATCGAGGGTTCTATGGCTGGTAAATGGAGATTGCAACACAGCCTACTTCCACAGAATGTTAAACTCGAGAAAGGCAATCAACCACATCCATTATCTTATAACTAATGATGGGGAACGACTTGAGTCACAATCAGGGATGATGGCGCATTGTATTGACTACTTCTCGAAGCTATTTGGAGGCCCATGTGAGCCCCAAATGTTCACGCAAGGTGATATCAGCACTCTCATCCCCTTTCGATGCTCTGATGATCAGAAGAAGGCCTTGACGGTGCGCTTTACTAGACTCGAAATCAGGAATGCGTTCTTCTCCCCCCCAAAGAACAAAACATGCGGGCCAGATGGATACTCTGCAGAATTCTTCTGTGGTTGCTGGGATATAGTGGGTCCAGAGGTTTGCGATGCTGTGAAGGAATTCTTCGTGTCAGGCTCCATGCTCAAGCAATGGAATACAACCACATTAGTTTTGATTCCAAAGATCACCAATGCTGCCTCAACATCAGATTTCAGGCCCATTTCTTGCTTGAACACAATATATAAAGTGATCTCCAGGCTCCTCGCCTCACGATTGCTCCCCATCCTCTCACAAGTCGTCTCCTCAGCTCAGTCTGCGTTCCTACCGGGTCGTTTGATCGGGGAAAATATCCTACTTGCCACTGATCTTGTGATCGGTTACAATCGCCAGTCTGATGAACCTAGAGCTATGCTAAAAGTGGATTTGAGAAAAGCGTTTGACTCTGTGAGGTGGGACTTCATTCTAGCTGCACTTCGAGCAATGGGAATTCCTACACGGTTTGCCAACTGGATTTCGGAATGCATATCCACGCCTTCGTTCACCATCGCTTTCAACGGGACCACGGGTGGAAACTTCATCAGTACCAAAGGCCTGAGACAGGGAGACCCCCTCTCTCCATATTTGTTTGTGCTAGCAATGGAATGCTTCTCAAGCCTGCTCCACTCAAGATTCGAGGCAGGGTATATTCACTATCACCCCCGAACCTCTGATCTTAAACTGTCTCATCTGATGTTTGCAGATGATGTAATGATATTCTTTGATGGTGGAAGCTCTTCTCTTCATGGGGTGACTGAAGCGTTAGACGATTTTGCCTCATGGTCAGGACTGAGAATTAACCCTCAAAAGTCTCAACTATTTTGCGCTGGTGTCGATGAGATAGAGGCTTTCGCTATGTCTCAATATGGATACACTGCAGGCACCTTCCCAGTTAGATATCTGGGACTTCCTCTCATGTCTCGGAAGCTGAAGATAAATGAATATGAGCCTCTGCTGGCCTCGCTGATAAAAAGATTCAGAGCATGGGCAATCTCTACTTTCTTGCTCCCAAAAGGCTGCATTAAGAAAATTGAATCCCTATGCTTGAGGTTCCTCTGGTCTGGTGATATAGAGCGAGTGGGACAAGCTAAGGTGGCTTGGGAGACAGTGTGTTTGCCAAAAGCGGAAGGAGGTCTTGGATTAAGAAGCCTACTGAGATGGAATACAACGCTCTGCCTTCATTATATATGGTTGCTTTTCTCGGAAAAGCCTTCTCTTTGGGCAAAGTTCTGGTTTGATGCGTGGACACCTTTAGTCCCCCTTATCAAACTGGTTGGTGTGGCAGGTCCTAGAAGATTACGATTGCCCTTGACTTCTACGGTCGCAGACGCATGCTCTCAAACTGGCTGGCTCCTTCCTTCTCCAAGATCTGAAGCCGAGCTCCAGCTCCATACACACTTGACACTGATCAGCCTTCCGAGCCAGAGCACTGTGGAGGACTCTTATCATTGGCTCACTAATGGAAGCAGTGGCAGAGATTACTCGGCCTCCGCGACTTGGAGTGACTGTCGGCCAAGAACTACAGAGAAGGACTGGGCGAAATTGATTTGGTTCAAAGGAAATGTCCCCAAGCATGCCTTTAATATGTGGACTGCACAGCTGAACAGACTTCCGACTAGGTACTGCACCGGCTATCTAGCATTCAAACGGGTTTTCTTGATTGGAATGAGCTTCTATCCTGGGTTAAACGCTCATCAAATAGAGCCCCTTCACTGCTCCGCAAAATTGCTGCTCAAGCTACCATATACCAAATATGGTGGCAAAGAAATGATAGACTCCACAACCACGGCTTCAAGCCGGCATCTTTTGTTTTTACACTGA
Protein Sequence:
- >Rsa1.0_00424.1_g00007.1|Raphanus_sativus|C2H2|Rsa1.0_00424.1_g00007.1
MTDPYSNLFTGWFKPNPFHNYLNSSTNLPPPSPFFLIPYSGDLRRPPPTPPPSPPLREPLPLLSLSPANKQQNHHDLIQEPPSTSMDVDYGHHHQQDDHNLDDDDHDVTVSLRIGLPSPSTRDMTSLLMMSSSSSSSRTTHHHEDMNDKKDLDNDHHHGGAGGGEDDDEDSVGGNSGCRISSLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGTESLRGTQPTGMLRLPCYCCALGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKSFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAYGIDGFDEEDEPASEMLPGWLYEANYEFSELGKIWVVWHPSVKVVIIKKSLQMITCEVLLPEATSWILVSIVYAANTEDLRLNLWKEIDEVSIYNCNRMLPWIVLEDFNQTRHPNEHSTAVSQNVDRKTRAFRECLLEAGLDDLNYRGNLFTWWNKNPTKPVAKNSTASLLMSYGKKCFHRLTNEDFLPMICYNWYSFNVVGSAMFRLARKLKLLKKEIRAFSKLNYSGIEMRVKEAHEVLIFQQAETLADPTPTNAALELEAHRKWLMLVKAEEKFFLQRSRVLWLVNGDCNTAYFHRMLNSRKAINHIHYLITNDGERLESQSGMMAHCIDYFSKLFGGPCEPQMFTQGDISTLIPFRCSDDQKKALTVRFTRLEIRNAFFSPPKNKTCGPDGYSAEFFCGCWDIVGPEVCDAVKEFFVSGSMLKQWNTTTLVLIPKITNAASTSDFRPISCLNTIYKVISRLLASRLLPILSQVVSSAQSAFLPGRLIGENILLATDLVIGYNRQSDEPRAMLKVDLRKAFDSVRWDFILAALRAMGIPTRFANWISECISTPSFTIAFNGTTGGNFISTKGLRQGDPLSPYLFVLAMECFSSLLHSRFEAGYIHYHPRTSDLKLSHLMFADDVMIFFDGGSSSLHGVTEALDDFASWSGLRINPQKSQLFCAGVDEIEAFAMSQYGYTAGTFPVRYLGLPLMSRKLKINEYEPLLASLIKRFRAWAISTFLLPKGCIKKIESLCLRFLWSGDIERVGQAKVAWETVCLPKAEGGLGLRSLLRWNTTLCLHYIWLLFSEKPSLWAKFWFDAWTPLVPLIKLVGVAGPRRLRLPLTSTVADACSQTGWLLPSPRSEAELQLHTHLTLISLPSQSTVEDSYHWLTNGSSGRDYSASATWSDCRPRTTEKDWAKLIWFKGNVPKHAFNMWTAQLNRLPTRYCTGYLAFKRVFLIGMSFYPGLNAHQIEPLHCSAKLLLKLPYTKYGGKEMIDSTTTASSRHLLFLH