Information report for Rsa1.0_00089.1_g00060.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_018445099.1 — PREDICTED: protein indeterminate-domain 14-like
- Swissprot: Q9C9X7 — IDD14_ARATH; Protein indeterminate-domain 14
- TrEMBL: A0A078EZ84 — A0A078EZ84_BRANA; BnaA07g24790D protein
- TrEMBL: A0A397YPQ5 — A0A397YPQ5_BRACM; Uncharacterized protein
- TrEMBL: M4CIL6 — M4CIL6_BRARP; Uncharacterized protein
- STRING: Bra004050.1-P — (Brassica rapa)
- GO:0007219 — Biological Process — Notch signaling pathway
- GO:0009630 — Biological Process — gravitropism
- GO:0009965 — Biological Process — leaf morphogenesis
- GO:0010601 — Biological Process — positive regulation of auxin biosynthetic process
- GO:0045944 — Biological Process — positive regulation of transcription from RNA polymerase II promoter
- GO:0048444 — Biological Process — floral organ morphogenesis
- GO:2000012 — Biological Process — regulation of auxin polar transport
- GO:2000904 — Biological Process — regulation of starch metabolic process
- GO:0016607 — Cellular Component — nuclear speck
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0003713 — Molecular Function — transcription coactivator activity
- GO:0043621 — Molecular Function — protein self-association
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0046982 — Molecular Function — protein heterodimerization activity
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G68130.1, AT1G68130.2
- Brassica napus: GSBRNA2T00124385001, GSBRNA2T00117913001, GSBRNA2T00117912001
- Brassica oleracea: XP_013588653.1, XP_013588652.1, XP_013588413.1
- Brassica rapa: XP_009105062.1, XP_009105061.1, XP_009105360.1
- Raphanus raphanistrum: RrC6678_p1
Sequences
CDS Sequence:
- >Rsa1.0_00089.1_g00060.1|Raphanus_sativus|C2H2|Rsa1.0_00089.1_g00060.1
ATGATAGACTACGAGAGAAGCAATAACACCAAGAACATCAACCATCATCAGAATCCTCATCCGTCTTCATCTTCCTCCGGTCTTCTTCCCGATGGTAATGAAGCCGCCGTGACCCAAAAGAGGAAACGACGACCCGCTGGGACACCAGATCCAGAGGCGGAGGTTGTATCTTTATCTCCAAGAACGCTACTAGAATCAGACAGGTACGTGTGTGAGATCTGTAACCAAGGTTTTCAGAGAGACCAGAATCTACAGATGCACAGGAGAAGGCATAAAGTTCCATGGAAGCTTTTAAAGAGAGAAACCAACGAGGAAGTTAAGAAGAGGGTCTACGTCTGTCCAGAGCCGACATGTCTCCACCACAACCCTTGTCATGCACTCGGAGATCTCGTGGGAATCAAGAAACACTTTCGAAGGAAACACAGTAACCACAAGCAATGGATCTGCGAGAGATGCTCAAAAGGCTACGCTGTTCAGTCTGATTACAAAGCTCATCTCAAAACATGTGGAACTCGCGGCCATTCCTGCGATTGCGGCCGCGTTTTCTCCAGAGTCGAGAGTTTTATAGAGCACCAAGACAATTGCACCATGCGCCAAACTCAAACCTCCAGCCACCGTTTAAAACAGCAGCAGCAACATACATCAAACGCTAAACAAACCGCTTTAACCTCCGAAAACATTGACCTCTCCATTGGTCCAGTTTTACCAAGACATCCTTTGCTAAGACAATCTCTACCTTCTGATCAACAACCATCCGGTTTGCTTTATCCTTTCGTTGGCGCAAGCGCTACTACTGGTAGTGGCATCGAGCTTCAGCTACTTCCATCGCGGGTTAGAGCTCATGATACCAGCCTTAGTCTGTCGATAGGGATGGAGACGACAATGTCAAGCTACGAGAAGGGAGAGACGAGCTTACTCTTGGGAGAAAGAGAGGCAGCCAAAAGGCAAATAGAGATTGCGGAACTGGAGTTTGCTGAAGCCAAGAGAATAAGGCAACATGCGAGAGGTGAGCTTCATAAAGCTCAACTTTATAGAGAAGAAGCAAGTAGGAGGACTAGTGCAACGATAATGCAAATCACTTGCCATGATTGCAAGAAATACTTTCAATCTGTTGCTGCTTCGTCTCCTCCTCCTCGTCTTCCACAACCACCTTGTACCGATGAGAGTACGTCTCTTGCCGTGAGCTATGTGTCTTCGGTAGCTACCGAAGGTGAAAAAGCGAGTGATAGAGCATCGTCATAG
Protein Sequence:
- >Rsa1.0_00089.1_g00060.1|Raphanus_sativus|C2H2|Rsa1.0_00089.1_g00060.1
MIDYERSNNTKNINHHQNPHPSSSSSGLLPDGNEAAVTQKRKRRPAGTPDPEAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETNEEVKKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWICERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDNCTMRQTQTSSHRLKQQQQHTSNAKQTALTSENIDLSIGPVLPRHPLLRQSLPSDQQPSGLLYPFVGASATTGSGIELQLLPSRVRAHDTSLSLSIGMETTMSSYEKGETSLLLGEREAAKRQIEIAELEFAEAKRIRQHARGELHKAQLYREEASRRTSATIMQITCHDCKKYFQSVAASSPPPRLPQPPCTDESTSLAVSYVSSVATEGEKASDRASS