Information report for PSME_00020819-RA
Gene Details
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Functional Annotation
- Refseq: XP_006378427.1 — protein SHOOT GRAVITROPISM 5 isoform X1
- Swissprot: F4IPE3 — IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
- TrEMBL: A0A2R6QHZ3 — A0A2R6QHZ3_ACTCH; Protein SHOOT GRAVITROPISM like
- STRING: POPTR_0010s11160.1 — (Populus trichocarpa)
- GO:0009630 — Biological Process — gravitropism
- GO:0009965 — Biological Process — leaf morphogenesis
- GO:0010601 — Biological Process — positive regulation of auxin biosynthetic process
- GO:0048444 — Biological Process — floral organ morphogenesis
- GO:2000012 — Biological Process — regulation of auxin polar transport
- GO:2000904 — Biological Process — regulation of starch metabolic process
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043621 — Molecular Function — protein self-association
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0046982 — Molecular Function — protein heterodimerization activity
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >PSME_00020819-RA|Pseudotsuga_menziesii|C2H2|PSME_00020819-RA
ATGAATTATGTGTCCATTAATGTGTGGGGATCAGCTCTCTTCTTGGAACAAATGGCGGAGATATTGACAGAACCAGGCACGCCTTGCAGCTCTGCTAACTCGGCCAGGCTTCTTCATGGCCCCTCATCACCTTCGCAATCTATTTCCCAACAATCTTATAACAAATCGTCTGTACCTCCCGTTTCACATGAAACAAGCAACAAGCGAATGCGTCGTCCAGCTGGAACACCCGATCCTGAAGCAGAGGTGGTTTCATTGTCGCCCAAGACATTGATGGAATCAGACAGATATGTGTGCGAGATATGCGAGCAGGGATTTCAGAGGGACCAAAACCTTCAGATGCACAGACGCAGGCATAAGGTTCCATGGAAATTATTGAAACGAGAGACAACCGATGCACGAAATAAACGAGTGTTTGTTTGCCCGGAACCAACATGCCTCCACCACAGTCCTTCTCACGCGCTGGGAGACCTGGTCGGCATCAAAAAACATTTTCGCAGGAAACACAGTAGCAGCAAACAGTGGACATGTGAAAAATGCTCCAAAGCCTACGCGGTACAATCCGATTATAAAGCACATCTCAAAACGTGCGGCACCAGAGGACACACTTGCGACTGTGGTCGAGTATTTTCAAGAGTTGAAAGCTTCATTGAACACCAAGACGATTGCACTGCAACTAAAGAGAAGATGGCTGATGATGGTCAGTTATCTATGCCCTGTTCATCCACCAGAATAAGCAGTTTGAATACATTCAATGCCACTGAGACAGTTGGCCTTTTCACTGCAACTGTGTCAAGAGGTATTGATTGTGGGAGGCTGGAGCCTAGTTCGTCGTCTGTGGAGCAAAGACAAGAGCTTCAATTTATGCCTTCCAAGCAACAAGGAGCATCTGAAACCTCTGAATTTTCGCAGCCATATTCAAAGCCAGCAGAAGCCATAAGTTCTCCTCGCTTGCAGTTATCTATTGGACTCGGTACTGAGATCACAGAAAACAAATTATACGAGGGGGGTCCCGAGAGGATTAAGGAGGAAACGGAACAACAAAAAAATCTGATGATGAGGGTGGCATACGATGAAATAGCTTATGCAGAACATGTACGAAGGGTGGCCAAAAGGCAGCTGGAATTAGCAGATATAGAATTTGAACGAGCAAAGAAAATGAGAGAGCAGGCTCACGCAGAGCTTGATAAAGCTCGACTCCTGAAAGACAAGGCAACCAGAGAGATAGCTGAGGCCACAATAAGTCCTCCGGAAATAACCTGCAGATCTTGCCATCGCCAGTTTCAGTGGCCGCAGCAATACCAATCTCCTTCACTCAGCGGCTTCTTGTCTATTTCTAATCTCCAGGAAGAAGGTGGCGCAGATGATGAAAACTCTCATGGAAAGATTTTTCCAGCAGTTAGCATGATGAGGTACATGCACTTCTCCAATCCGGCAGTCATAGAAATTGATGAGGGCAATCAAGATAAAATGCAGATGTCGTTATTTGCCTTAGGGGCTCCTGCATTAATTCCTAGTCCGTCTCAAGAAAGATCAAACCCTAGGGGCCAGCTTCATGTTCCTGTTAGTAGAACACTATCTAGCTCCGTTACTTCGTCCAGAAAGATCAAACCCAATTAA
Protein Sequence:
- >PSME_00020819-RA|Pseudotsuga_menziesii|C2H2|PSME_00020819-RA
MNYVSINVWGSALFLEQMAEILTEPGTPCSSANSARLLHGPSSPSQSISQQSYNKSSVPPVSHETSNKRMRRPAGTPDPEAEVVSLSPKTLMESDRYVCEICEQGFQRDQNLQMHRRRHKVPWKLLKRETTDARNKRVFVCPEPTCLHHSPSHALGDLVGIKKHFRRKHSSSKQWTCEKCSKAYAVQSDYKAHLKTCGTRGHTCDCGRVFSRVESFIEHQDDCTATKEKMADDGQLSMPCSSTRISSLNTFNATETVGLFTATVSRGIDCGRLEPSSSSVEQRQELQFMPSKQQGASETSEFSQPYSKPAEAISSPRLQLSIGLGTEITENKLYEGGPERIKEETEQQKNLMMRVAYDEIAYAEHVRRVAKRQLELADIEFERAKKMREQAHAELDKARLLKDKATREIAEATISPPEITCRSCHRQFQWPQQYQSPSLSGFLSISNLQEEGGADDENSHGKIFPAVSMMRYMHFSNPAVIEIDEGNQDKMQMSLFALGAPALIPSPSQERSNPRGQLHVPVSRTLSSSVTSSRKIKPN